mRNA_H-elongata_contig84040.16014.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84040.16014.1
Unique NamemRNA_H-elongata_contig84040.16014.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84040.16014.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 1.780e-77
Identity = 144/360 (40.00%), Postives = 210/360 (58.33%), Query Frame = 1
Query:   10 AMSAEIKGFTDSKTFTVLDKLPEGEKAVGSRWVFS*NQDKNEMIANTKTGLVAQGFMQRESMDFFQTADPTPAVASVNIILAVASELGYPVYHLDTAQAFT*AQLDRTIYIKLPGGCGSLSSKIVRLEKALYDLKQSGLLWNSLLVETFVMRHDMEQCKTDPCVFGKFRDCKVVLILVVHVDDMAVAGTEDEVSQLYAVLNEDFTTNNIGELSLFTGCVMAQDVEKDYLTISQTPFIEPLARSFDV---------TSTFDFPVV----------------RHWKAVLNFLKYLLCSK*LGLAFERGSGFDMSLWTDSNYAEKVDDRRSVSGIGIMLCFAVGGWASLTQRVIVLSTTEAEY 1014
            AM  E +G   + TF+ +D  PEG + V S+W FS   +K   I   K  LVA+GF Q  ++D+F ++ P P+ AS+ ++LAVA+E G  + H D  QA+T A LD  +++KLP GCG  S KI + E+A+Y LKQSG  W     +T V  +  EQCK DPCVF K  D  VV+I+V++VDD+ VAG++++  +L A LN+ F T N+GE   F GC + +DVE   L ISQT +I+ +   +            STF  P V                RHW A+   L YL  ++ LG+ ++RGSG  ++++ D++YA+  +DRRSV+G+   +   V    S TQ ++ LS+TEAEY
Sbjct:  555 AMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMGEEWPAREAIGSMVWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVAGLATTVGGTVVSHGSKTQSIVSLSSTEAEY 912          
BLAST of mRNA_H-elongata_contig84040.16014.1 vs. uniprot
Match: A0A6H5KU29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU29_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 4.450e-69
Identity = 132/362 (36.46%), Postives = 195/362 (53.87%), Query Frame = 1
Query:    1 WLDAMSAEIKGFTDSKTFTVLDKLPEGEKAVGSRWVFS*NQDKNEMIANTKTGLVAQGFMQRESMDFFQTADPTPAVASVNIILAVASELGYPVYHLDTAQAFT*AQLDRTIYIKLPGGCGSLSSKIVRLEKALYDLKQSGLLWNSLLVETFVMRHDMEQCKTDPCVFGKFRDCKVVLILVVHVDDMAVAGTEDEVSQLYAVLNEDFTTNNIGELSLFTGCVMAQDVEKDYLTISQTPFIEPLARSFDVTSTFDFPV------------------------VRHWKAVLNFLKYLLCSK*LGLAFERGSGFDMSLWTDSNYAEKVDDRRSVSGIGIMLCFAVGGWASLTQRVIVLSTTEAEY 1014
            W  AM  E  G   + TF+ +D  PEG + V S+  F+   +K   I   K  LVA+GF Q  ++D+F ++ P P+ AS+ ++LAVA+E    + H D  QAFT A+LD  ++++LP GCG  S K+V+ E+A+Y LKQSG  W     +T V  +  EQCK DPCVF K +D  VV     +VDD+ VAG++D+  +L   LN+ F T ++GE   F GC + +D E   + ISQT +I+ +   FDV ST   P                                         ++ LG+ ++R SG  ++++ D++YA+  +DRRSVSG+   +  AV    S TQ  + LS+TEAEY
Sbjct:  133 WEQAMREEFDGHLGTGTFSFVDVTPEGRRPVSSKCRFTWKTNKEGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMKDDVVVXXXXXYVDDILVAGSDDDCKELLDSLNKAFPTKDLGECVWFDGCAVERDPEAGTIRISQTAYIDSIMNRFDVQSTSSIPASPGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTRDLGITYQRESGLGLAVYVDASYAD-TEDRRSVSGLATTVEGAVISHGSKTQAFVSLSSTEAEY 492          
BLAST of mRNA_H-elongata_contig84040.16014.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 2.990e-68
Identity = 132/395 (33.42%), Postives = 211/395 (53.42%), Query Frame = 1
Query:    1 WLDAMSAEIKGFTDSKTFTVLDKLPEGEKAVGSRWVFS*NQDKNEMIANTKTGLVAQGFMQRESMDFFQTADPTPAVASVNIILAVASELGYPVYHLDTAQAFT*AQLDRTIYIKLPGGCGSLSSKIVRLEKALYDLKQSGLLWN----SLLVETFVMRHDMEQCKTDPCVFGKFRDCKVVLILVVHVDDMAVAGTEDEVSQLYAVLNEDFTTNNIGELSLFTGCVMAQDVEKDYLTISQTPFIEPLARSFDVTSTFDFPV-----------------------------------------------------VRHWKAVLNFLKYLLCSK*LGLAFERGSGFDMSLWTDSNYAEKVDDRRSVSGIGIMLCFAVGGWASLTQRVIVLSTTEAEY 1014
            W +A+  E+ G   + TF+ ++KLPEG KAV ++WVF    D+  +I + K  LVA+GF Q    D+  ++   PAV+S+ + +A A+E G P  H D  QA+T A++   +Y+++  G G+++ K++++E+ALY LKQSG  W     ++LV++       EQC+ DPCVF K  D KVV I+V++VDD+   G+E+E  +L   L +     ++GE + + GC + +D+E    T+SQ  +I  L   F +T+T   P                                                      +R WKA++  L YL  +  LG+ + RGSG D+ ++ D++YA++   RRSV+GI + +   V   AS TQR++ LST+EAEY
Sbjct:  751 WDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDS-----GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEY 1140          
BLAST of mRNA_H-elongata_contig84040.16014.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 4.080e-68
Identity = 132/395 (33.42%), Postives = 211/395 (53.42%), Query Frame = 1
Query:    1 WLDAMSAEIKGFTDSKTFTVLDKLPEGEKAVGSRWVFS*NQDKNEMIANTKTGLVAQGFMQRESMDFFQTADPTPAVASVNIILAVASELGYPVYHLDTAQAFT*AQLDRTIYIKLPGGCGSLSSKIVRLEKALYDLKQSGLLWN----SLLVETFVMRHDMEQCKTDPCVFGKFRDCKVVLILVVHVDDMAVAGTEDEVSQLYAVLNEDFTTNNIGELSLFTGCVMAQDVEKDYLTISQTPFIEPLARSFDVTSTFDFPV-----------------------------------------------------VRHWKAVLNFLKYLLCSK*LGLAFERGSGFDMSLWTDSNYAEKVDDRRSVSGIGIMLCFAVGGWASLTQRVIVLSTTEAEY 1014
            W +A+  E+ G   + TF+ ++KLPEG KAV ++WVF    D+  +I + K  LVA+GF Q    D+  ++   PAV+S+ + +A A+E G P  H D  QA+T A++   +Y+++  G G+++ K++++E+ALY LKQSG  W     ++LV++       EQC+ DPCVF K  D KVV I+V++VDD+   G+E+E  +L   L +     ++GE + + GC + +D+E    T+SQ  +I  L   F +T+T   P                                                      +R WKA++  L YL  +  LG+ + RGSG D+ ++ D++YA++   RRSV+GI + +   V   AS TQR++ LST+EAEY
Sbjct: 1304 WDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDS-----GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEY 1693          
BLAST of mRNA_H-elongata_contig84040.16014.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 2.240e-62
Identity = 113/256 (44.14%), Postives = 158/256 (61.72%), Query Frame = 1
Query:    1 WLDAMSAEIKGFTDSKTFTVLDKLPEGEKAVGSRWVFS*NQDKNEMIANTKTGLVAQGFMQRESMDFFQTADPTPAVASVNIILAVASELGYPVYHLDTAQAFT*AQLDRTIYIKLPGGCGSLSSKIVRLEKALYDLKQSGLLWNSLLVETFVMRHDMEQCKTDPCVFGKFRDCKVVLILVVHVDDMAVAGTEDEVSQLYAVLNEDFTTNNIGELSLFTGCVMAQDVEKDYLTISQTPFIEPLARSFDVTSTFDFP 768
            W  AM  E +G   + TF+ +D  PEG + V S+W FS   +K   I   K  LVA+GF Q  ++D+F ++ P P+ AS+ ++LAVA+E G  + H D  QA+T A LD  +++KLP GCG  S KI + E+A+Y LKQSG  W     +T V  +  EQCK DPCVF K  D  VV+I+V++VDD+ VAG++++  +L A LN+ F T N+GE   F GC + +DVE   L ISQT +I+ +   FDV ST   P
Sbjct: 1151 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP 1405          
BLAST of mRNA_H-elongata_contig84040.16014.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 2.620e-62
Identity = 113/256 (44.14%), Postives = 158/256 (61.72%), Query Frame = 1
Query:    1 WLDAMSAEIKGFTDSKTFTVLDKLPEGEKAVGSRWVFS*NQDKNEMIANTKTGLVAQGFMQRESMDFFQTADPTPAVASVNIILAVASELGYPVYHLDTAQAFT*AQLDRTIYIKLPGGCGSLSSKIVRLEKALYDLKQSGLLWNSLLVETFVMRHDMEQCKTDPCVFGKFRDCKVVLILVVHVDDMAVAGTEDEVSQLYAVLNEDFTTNNIGELSLFTGCVMAQDVEKDYLTISQTPFIEPLARSFDVTSTFDFP 768
            W  AM  E +G   + TF+ +D  PEG + V S+W FS   +K   I   K  LVA+GF Q  ++D+F ++ P P+ AS+ ++LAVA+E G  + H D  QA+T A LD  +++KLP GCG  S KI + E+A+Y LKQSG  W     +T V  +  EQCK DPCVF K  D  VV+I+V++VDD+ VAG++++  +L A LN+ F T N+GE   F GC + +DVE   L ISQT +I+ +   FDV ST   P
Sbjct:  752 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP 1006          
BLAST of mRNA_H-elongata_contig84040.16014.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 3.030e-62
Identity = 113/256 (44.14%), Postives = 158/256 (61.72%), Query Frame = 1
Query:    1 WLDAMSAEIKGFTDSKTFTVLDKLPEGEKAVGSRWVFS*NQDKNEMIANTKTGLVAQGFMQRESMDFFQTADPTPAVASVNIILAVASELGYPVYHLDTAQAFT*AQLDRTIYIKLPGGCGSLSSKIVRLEKALYDLKQSGLLWNSLLVETFVMRHDMEQCKTDPCVFGKFRDCKVVLILVVHVDDMAVAGTEDEVSQLYAVLNEDFTTNNIGELSLFTGCVMAQDVEKDYLTISQTPFIEPLARSFDVTSTFDFP 768
            W  AM  E +G   + TF+ +D  PEG + V S+W FS   +K   I   K  LVA+GF Q  ++D+F ++ P P+ AS+ ++LAVA+E G  + H D  QA+T A LD  +++KLP GCG  S KI + E+A+Y LKQSG  W     +T V  +  EQCK DPCVF K  D  VV+I+V++VDD+ VAG++++  +L A LN+ F T N+GE   F GC + +DVE   L ISQT +I+ +   FDV ST   P
Sbjct: 1131 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP 1385          
BLAST of mRNA_H-elongata_contig84040.16014.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 3.080e-62
Identity = 113/256 (44.14%), Postives = 158/256 (61.72%), Query Frame = 1
Query:    1 WLDAMSAEIKGFTDSKTFTVLDKLPEGEKAVGSRWVFS*NQDKNEMIANTKTGLVAQGFMQRESMDFFQTADPTPAVASVNIILAVASELGYPVYHLDTAQAFT*AQLDRTIYIKLPGGCGSLSSKIVRLEKALYDLKQSGLLWNSLLVETFVMRHDMEQCKTDPCVFGKFRDCKVVLILVVHVDDMAVAGTEDEVSQLYAVLNEDFTTNNIGELSLFTGCVMAQDVEKDYLTISQTPFIEPLARSFDVTSTFDFP 768
            W  AM  E +G   + TF+ +D  PEG + V S+W FS   +K   I   K  LVA+GF Q  ++D+F ++ P P+ AS+ ++LAVA+E G  + H D  QA+T A LD  +++KLP GCG  S KI + E+A+Y LKQSG  W     +T V  +  EQCK DPCVF K  D  VV+I+V++VDD+ VAG++++  +L A LN+ F T N+GE   F GC + +DVE   L ISQT +I+ +   FDV ST   P
Sbjct: 1294 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP 1548          
BLAST of mRNA_H-elongata_contig84040.16014.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 3.540e-62
Identity = 106/252 (42.06%), Postives = 158/252 (62.70%), Query Frame = 1
Query:    1 WLDAMSAEIKGFTDSKTFTVLDKLPEGEKAVGSRWVFS*NQDKNEMIANTKTGLVAQGFMQRESMDFFQTADPTPAVASVNIILAVASELGYPVYHLDTAQAFT*AQLDRTIYIKLPGGCGSLSSKIVRLEKALYDLKQSGLLWNSLLVETFVMRHDMEQCKTDPCVFGKFRDCKVVLILVVHVDDMAVAGTEDEVSQLYAVLNEDFTTNNIGELSLFTGCVMAQDVEKDYLTISQTPFIEPLARSFDVTST 756
            W  AM  EI G   + TFT + +LPEG KA+GS+WVFS   ++  +I + K  +VA+GF Q   +DF +++   P+ AS+  ++AVA+E G  + H D  QA+  A+L   IY++ P GCGS+S K+V++E+ALY LKQSG  W     +  +  +  EQC+ DPC+F K  D +VV ++V++VDD+ VA  E E   L+A LN  F   ++GE + + GC +A DVE    T+SQT  IE + + F+VT+T
Sbjct:   31 WETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALI-EYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGEREDLFASLNNRFPVKDLGECTWYDGCAIAMDVENGITTLSQTAKIESMLKRFNVTTT 281          
BLAST of mRNA_H-elongata_contig84040.16014.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 6.190e-62
Identity = 122/339 (35.99%), Postives = 183/339 (53.98%), Query Frame = 1
Query:    1 WLDAMSAEIKGFTDSKTFTVLDKLPEGEKAVGSRWVFS*NQDKNEMIANTKTGLVAQGFMQRESMDFFQTADPTPAVASVNIILAVASELGYPVYHLDTAQAFT*AQLDRTIYIKLPGGCGSLSSKIVRLEKALYDLKQSGLLWNSLLVETFVMRHDMEQCKTDPCVFGKFRDCKVVLILVVHVDDMAVAGTEDEVSQLYAVLNEDFTTNNIGELSLFTGCV-MAQDVEKDYLTISQTPFIEPLARSFDVTSTFDFPVVRHWKAVLNFLKYLLCSK*LGLAFERGSGFDMSLWTDSNYAEKVDDRRSVSGIGIMLCFAVGGWASLTQRVIVLSTTEAEY 1014
            W  AM  E +G   + TF+ +D  PEG + V S+W F+   ++   I   K  LVA+G  Q  ++D+F ++ P P+ AS+ ++LAVA+E G  + H D  QA+T A LD  +++KLP GCG  S KI + E+A+Y LKQSG  W     +T V  +  EQCK DPCVF K  D  VV+I+V++VDD+ VAG++++  +L A LN+ F T N+GE   F GC  + +DV+                                                  + ++RGSG  ++++ D++YA+  +DRRSVSG+   +   V    S TQ ++ LS+TEAEY
Sbjct:  413 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFNWKTNQEGKIDTLKARLVARGVSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAAIERDVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSMVSLSSTEAEY 749          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84040.16014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTV6_9PHAE1.780e-7740.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KU29_9PHAE4.450e-6936.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE2.990e-6833.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE4.080e-6833.42Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.240e-6244.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE2.620e-6244.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE3.030e-6244.14Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE3.080e-6244.14Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JUN0_9PHAE3.540e-6242.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JU90_9PHAE6.190e-6235.99Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84040contigH-elongata_contig84040:1577..2749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1014
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84040.16014.1prot_H-elongata_contig84040.16014.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84040 1763..2290 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931245.0982585-UTR-H-elongata_contig84040:1576..17621622931245.0982585-UTR-H-elongata_contig84040:1576..1762Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84040 1577..1762 -
1691679757.4639573-UTR-H-elongata_contig84040:1576..17621691679757.4639573-UTR-H-elongata_contig84040:1576..1762Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84040 1577..1762 -
1622931245.1539145-UTR-H-elongata_contig84040:2290..27491622931245.1539145-UTR-H-elongata_contig84040:2290..2749Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84040 2291..2749 -
1691679757.4908972-UTR-H-elongata_contig84040:2290..27491691679757.4908972-UTR-H-elongata_contig84040:2290..2749Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84040 2291..2749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931245.1171293-CDS-H-elongata_contig84040:1762..18161622931245.1171293-CDS-H-elongata_contig84040:1762..1816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84040 1763..1816 -
1691679757.473857-CDS-H-elongata_contig84040:1762..18161691679757.473857-CDS-H-elongata_contig84040:1762..1816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84040 1763..1816 -
1622931245.1329186-CDS-H-elongata_contig84040:1975..22901622931245.1329186-CDS-H-elongata_contig84040:1975..2290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84040 1976..2290 -
1691679757.4824128-CDS-H-elongata_contig84040:1975..22901691679757.4824128-CDS-H-elongata_contig84040:1975..2290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84040 1976..2290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84040.16014.1

>prot_H-elongata_contig84040.16014.1 ID=prot_H-elongata_contig84040.16014.1|Name=mRNA_H-elongata_contig84040.16014.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MRHDMEQCKTDPCVFGKFRDCKVVLILVVHVDDMAVAGTEDEVSQLYAVL
NEDFTTNNIGELSLFTGCVMAQDVEKDYLTISQTPFIEPLARSFDVTSTF
DFPVVRHWKAVLNFLKYLLCSK*
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mRNA from alignment at H-elongata_contig84040:1577..2749-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84040.16014.1 ID=mRNA_H-elongata_contig84040.16014.1|Name=mRNA_H-elongata_contig84040.16014.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1173bp|location=Sequence derived from alignment at H-elongata_contig84040:1577..2749- (Himanthalia elongata Himel1 dioecious)
TGGTTAGATGCGATGAGTGCCGAAATTAAGGGTTTCACAGACTCGAAAAC TTTCACGGTTTTGGACAAGTTGCCTGAGGGTGAGAAAGCAGTTGGTTCTA GGTGGGTGTTTTCATAAAATCAGGACAAGAATGAAATGATCGCAAATACG AAGACTGGACTAGTGGCACAAGGATTCATGCAGAGGGAGAGCATGGATTT CTTCCAGACTGCTGACCCCACACCTGCCGTGGCATCGGTAAATATTATAC TTGCTGTTGCAAGTGAATTAGGTTATCCAGTATACCATCTTGACACCGCG CAAGCGTTCACATAAGCTCAGTTGGACCGCACGATTTACATTAAGCTTCC TGGTGGTTGTGGTAGCTTGTCTAGTAAGATCGTTCGACTTGAGAAGGCTC TCTATGACCTTAAACAGAGCGGCTTACTTTGGAACAGTTTATTGGTCGAA ACTTTTGTGATGAGGCATGACATGGAACAATGCAAGACCGACCCTTGTGT GTTCGGTAAGTTTCGGGATTGTAAGGTAGTCCTGATTCTGGTCGTTCATG TAGACGACATGGCGGTAGCTGGTACAGAGGATGAGGTGAGCCAGCTGTAC GCGGTGCTCAACGAGGATTTTACAACAAACAACATCGGCGAGTTATCGCT TTTCACGGGGTGTGTGATGGCTCAGGATGTAGAGAAGGACTATCTCACAA TCTCACAGACTCCCTTCATCGAGCCTCTCGCAAGAAGTTTCGATGTGACT TCGACTTTTGATTTCCCGGTGGTAGTTGGCGCAAACGTTGAGGCTAGAAA TGAAGGGGAGCCGGGGGGGCCGTGGACCTATGTAGAAGCTATGGGATCCC TGATGCGGTTGGTCACTATGACCAGGCTGAATATTGTAAATGCCGTGCGT GCTGTAACTGGCCACTTCCGTAATCTAACGAAGAGGCACTGGAAGGCAGT GCTAAATTTTTTAAAGTATCTGCTTTGTAGCAAGTAGCTTGGTTTGGCGT TCGAGAGAGGCTCGGGGTTTGATATGTCGTTGTGGACGGACTCCAATTAC GCTGAGAAGGTAGATGACAGGCGGTCTGTCTCTGGAATAGGGATTATGCT ATGTTTTGCTGTGGGGGGGTGGGCAAGCTTGACACAGAGGGTGATTGTTC TTTCAACTACTGAGGCTGAGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig84040:1577..2749-

>mRNA_H-elongata_contig84040.16014.1 ID=mRNA_H-elongata_contig84040.16014.1|Name=mRNA_H-elongata_contig84040.16014.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig84040:1577..2749- (Himanthalia elongata Himel1 dioecious)
ATGAGGCATGACATGGAACAATGCAAGACCGACCCTTGTGTGTTCGGTAA
GTTTCGGGATTGTAAGGTAGTCCTGATTCTGGTCGTTCATGTAGACGACA
TGGCGGTAGCTGGTACAGAGGATGAGGTGAGCCAGCTGTACGCGGTGCTC
AACGAGGATTTTACAACAAACAACATCGGCGAGTTATCGCTTTTCACGGG
GTGTGTGATGGCTCAGGATGTAGAGAAGGACTATCTCACAATCTCACAGA
CTCCCTTCATCGAGCCTCTCGCAAGAAGTTTCGATGTGACTTCGACTTTT
GATTTCCCGGTGGTAATGAGGCATGACATGGAACAATGCAAGACCGACCC
TTGTGTGTTCGGTAAGTTTCGGGATTGTAAGGTAGTCCTGATTCTGGTCG
TTCATGTAGACGACATGGCGGTAGCTGGTACAGAGGATGAGGTGAGCCAG
CTGTACGCGGTGCTCAACGAGGATTTTACAACAAACAACATCGGCGAGTT
ATCGCTTTTCACGGGGTGTGTGATGGCTCAGGATGTAGAGAAGGACTATC
TCACAATCTCACAGACTCCCTTCATCGAGCCTCTCGCAAGAAGTTTCGAT
GTGACTTCGACTTTTGATTTCCCGGTGGTAAGGCACTGGAAGGCAGTGCT
AAATTTTTTAAAGTATCTGCTTTGTAGCAAGTAGAGGCACTGGAAGGCAG
TGCTAAATTTTTTAAAGTATCTGCTTTGTAGCAAGTAG
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