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Homology
BLAST of mRNA_H-elongata_contig8403.16013.1 vs. uniprot
Match: D7G8A2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A2_ECTSI) HSP 1 Score: 191 bits (485), Expect = 4.910e-47 Identity = 204/530 (38.49%), Postives = 264/530 (49.81%), Query Frame = 1
Query: 868 PGATMRIPVLVPQSGAD-EALVLSICSEDQSRMF---VDEDDVLASALAACLGTAILASRARRRVRELAEETDADLEVRREREQAANAAATADAAEARCXAERAAADTRALITTARGLKAQAESAAAACRRAERQTEALWHLLVGLHSA-RRDHAAIATAVTERAVAVVPACERAVLLTPRQGRRWEKMPEAT-EDRDRANFFSPDPRVWASAASGKRGRRSERGGRSGVGKGWAGTIERAALKAVAEGKTVCV-------------RDRFDGATVSPQR-VFCFSPLSQSAMTPQPGRYSRAERGSENVRPKGG---------DQIDRVDQTGSDA-DGSCSAVCAIAWVLRLNKTVAR---------VGSHPIDVEPVA-AWSLPP------LPERVSTVIEVVGLAVSLALFAP--SDKLSGALARRYACADISTRSQEG----SRDHEM-------------KRRREKEXXXXXXXXLRRETAALASRVQTLECKAAGLRASEARSSSALARAEADAMAAKGELEL 2262
PG ++ V +P G+ E LVLSI +R + + + SALAACLG A+ R + VR L +ER++ A A +A AEAR +RA A RAL+ A KAQA + AAA RA++QT+AL HLL GL A R+ HAA+A +V A AVVP CE +VLLTPR+ R A DR FSPDPR WA+A + + + R GK WA T+E AA++A + GKT+CV RD DG S Q V FSP+ + + +P R E G G + +D V TGS A GS +AWVLRL+ A GS V P+ A S PP LP+ +S+ I V AV LALFA +D++ G AR A + S+ +R HE+ K RE+E LR T ALA RV+TLE +AAGLRASEARS++ALARA AD A +GEL+L
Sbjct: 321 PGLAKQLQVHIPYYGSRAEPLVLSIRGNSNARQGCFRIRDRFAVGSALAACLGIALQVLREKEHVRRL-----------KERDEVAAACTSAAEAEARTRGQRAVAGMRALVAAAEASKAQALTEAAAAERADQQTDALRHLLSGLDDAGRKGHAAVAASVERLASAVVPGCEGSVLLTPRRHRSGGSSRSAAGAGGDRRTSFSPDPRAWATATASRMHGAVDGSERFECGKAWARTVEEAAVQAYSTGKTMCVTMDLTPARSSQGCRDGNDGGGASRQSPVVYFSPVP-AVLPVEPERLVNGENGGPGTPVSSGRMRAAELQREYVDCV--TGSCAMSGSVGTTGLLAWVLRLDAVEAACDDGDDEEGAGSPSDAVSPLTEAISEPPSPPRTHLPQCISSAINAVVHAVGLALFATDTADEIHGRPARSNAFKRRRSSSRRARHVENRMHEVISSSTGPGETQLAKSSREEELRR-----LRDGTTALAERVKTLEGRAAGLRASEARSAAALARARADVGATRGELQL 831
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-19_003720.1 |
| Exons | 2 |
| Model size | 2283 |
| Cds size | 2280 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931245.0158076-CDS-H-elongata_contig8403:2815..4474 | 1622931245.0158076-CDS-H-elongata_contig8403:2815..4474 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig8403 2816..4474 - |
| 1691679757.4285812-CDS-H-elongata_contig8403:2815..4474 | 1691679757.4285812-CDS-H-elongata_contig8403:2815..4474 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig8403 2816..4474 - |
| 1622931245.033863-CDS-H-elongata_contig8403:4522..5143 | 1622931245.033863-CDS-H-elongata_contig8403:4522..5143 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig8403 4523..5143 - |
| 1691679757.4395974-CDS-H-elongata_contig8403:4522..5143 | 1691679757.4395974-CDS-H-elongata_contig8403:4522..5143 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig8403 4523..5143 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931245.052098-UTR-H-elongata_contig8403:5143..5146 | 1622931245.052098-UTR-H-elongata_contig8403:5143..5146 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig8403 5144..5146 - |
| 1691679757.4523108-UTR-H-elongata_contig8403:5143..5146 | 1691679757.4523108-UTR-H-elongata_contig8403:5143..5146 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig8403 5144..5146 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8403.16013.1 >prot_H-elongata_contig8403.16013.1 ID=prot_H-elongata_contig8403.16013.1|Name=mRNA_H-elongata_contig8403.16013.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=760bp
MGEAVTQAGAASIAAAFFRKQVAACAWADEELPTCTLITKRSHETGISEA SSLRFPLGVCHEEHALVSSGSVRELVVSRGGAGPDFSPKEKRVCAKAAAL LDQALCRIRHEEALVATKAALESSLRGMEEASTVVAVMTEERKQRVEVHE QARTELRQNHERELSAVREELRRSCEEASELQRRLQNMERSVGAVASAAN DLCRVAAAIAAEDLGNGSETRMTALVEGAARRALRCPYARVEYVSEPRFP TTSRVFDGGWREGNGGGFGRYSVESKEDPAAVFADKKWPGATMRIPVLVP QSGADEALVLSICSEDQSRMFVDEDDVLASALAACLGTAILASRARRRVR ELAEETDADLEVRREREQAANAAATADAAEARCRAERAAADTRALITTAR GLKAQAESAAAACRRAERQTEALWHLLVGLHSARRDHAAIATAVTERAVA VVPACERAVLLTPRQGRRWEKMPEATEDRDRANFFSPDPRVWASAASGKR GRRSERGGRSGVGKGWAGTIERAALKAVAEGKTVCVRDRFDGATVSPQRV FCFSPLSQSAMTPQPGRYSRAERGSENVRPKGGDQIDRVDQTGSDADGSC SAVCAIAWVLRLNKTVARVGSHPIDVEPVAAWSLPPLPERVSTVIEVVGL AVSLALFAPSDKLSGALARRYACADISTRSQEGSRDHEMKRRREKESRDA ELERLRRETAALASRVQTLECKAAGLRASEARSSSALARAEADAMAAKGE LELVALERDR back to topmRNA from alignment at H-elongata_contig8403:2816..5146- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig8403.16013.1 ID=mRNA_H-elongata_contig8403.16013.1|Name=mRNA_H-elongata_contig8403.16013.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2331bp|location=Sequence derived from alignment at H-elongata_contig8403:2816..5146- (Himanthalia elongata Himel1 dioecious) CAGATGGGAGAGGCCGTAACACAAGCGGGCGCCGCGTCTATCGCCGCGGC
ATTCTTTCGGAAGCAGGTGGCCGCCTGCGCATGGGCAGATGAAGAACTCC
CCACGTGCACCTTAATCACGAAGAGATCACACGAAACGGGCATATCCGAG
GCATCCTCGCTTCGGTTTCCACTAGGCGTCTGCCACGAGGAGCACGCCCT
GGTTTCCTCCGGCAGCGTGCGCGAACTGGTGGTATCTCGTGGGGGGGCGG
GACCCGATTTTTCTCCCAAGGAGAAGCGTGTTTGCGCGAAGGCAGCGGCG
CTCCTCGACCAAGCCCTCTGCCGCATCCGTCACGAGGAAGCTCTCGTCGC
GACCAAAGCCGCGCTCGAAAGCTCGCTCCGCGGTATGGAGGAAGCCTCGA
CGGTTGTCGCTGTGATGACGGAGGAAAGAAAGCAGCGCGTCGAGGTGCAC
GAGCAAGCGCGCACTGAACTCCGCCAAAATCACGAGCGTGAGCTCTCGGC
GGTGAGGGAAGAGCTCCGGCGTTCGTGCGAAGAGGCCTCGGAACTCCAAC
GTCGGCTACAAAACATGGAGCGGTCGGTTGGTGCAGTGGCGAGCGCCGCG
AACGATCTTTGCCGTGTGGCAGCGGTCGACTGTACCAGGGCGAAAACGAC
TATCGGCTGCGTTCGGGGGGAGGCGATCGCTGCTGAAGATCTGGGGAATG
GAAGTGAGACGAGAATGACAGCCTTGGTTGAAGGCGCCGCTCGGAGAGCT
CTACGTTGTCCTTACGCTCGAGTGGAGTATGTATCTGAGCCTAGGTTTCC
GACGACTTCGAGGGTTTTCGACGGAGGTTGGCGCGAAGGAAATGGTGGCG
GGTTCGGACGATACTCTGTCGAAAGTAAAGAAGATCCTGCAGCAGTTTTC
GCCGACAAGAAATGGCCCGGGGCGACTATGCGCATTCCCGTACTCGTCCC
GCAGAGCGGTGCCGACGAGGCGCTGGTCCTGTCCATATGCAGTGAGGACC
AGTCACGTATGTTCGTGGATGAAGACGACGTTTTGGCTTCCGCCCTCGCC
GCATGTCTCGGGACGGCCATTCTCGCGTCCCGAGCAAGACGGCGAGTCCG
AGAGCTGGCGGAAGAAACGGATGCCGATCTCGAGGTTCGCCGAGAGCGCG
AGCAGGCCGCCAACGCGGCCGCTACCGCCGACGCTGCCGAGGCGCGGTGC
CGTGCCGAGCGCGCCGCAGCTGACACGAGGGCACTGATTACGACCGCCCG
GGGGTTGAAAGCTCAGGCGGAGTCTGCGGCCGCGGCTTGTCGCCGAGCGG
AGCGACAGACGGAAGCACTGTGGCACCTCCTCGTGGGATTGCACTCGGCC
AGGCGCGACCACGCCGCCATCGCCACCGCGGTGACCGAGAGAGCGGTGGC
GGTCGTCCCGGCGTGCGAACGCGCCGTGCTTCTTACTCCTCGTCAAGGTC
GACGCTGGGAGAAAATGCCAGAGGCAACGGAAGACCGCGATAGGGCCAAT
TTTTTCTCGCCGGACCCGCGTGTGTGGGCGAGCGCTGCGAGCGGGAAGAG
AGGGAGACGAAGTGAGAGGGGCGGAAGAAGCGGGGTTGGCAAGGGGTGGG
CGGGGACGATTGAACGAGCCGCGTTGAAGGCGGTGGCGGAAGGCAAGACC
GTTTGTGTGCGCGATCGCTTCGACGGCGCCACTGTCTCGCCTCAACGAGT
GTTCTGCTTCTCGCCTCTGTCTCAGTCAGCGATGACGCCACAGCCCGGAC
GATATTCCCGCGCAGAACGCGGAAGCGAAAACGTTCGGCCTAAAGGCGGG
GACCAGATCGATCGAGTGGATCAAACGGGTTCTGATGCAGATGGCAGTTG
TTCTGCCGTGTGCGCAATCGCCTGGGTGTTGCGCCTGAACAAGACTGTCG
CTCGAGTTGGATCCCATCCGATTGATGTCGAACCGGTCGCAGCATGGTCT
TTACCACCGTTACCAGAACGGGTTTCCACTGTGATCGAAGTCGTAGGCCT
CGCTGTCAGTCTTGCTCTGTTTGCGCCCAGTGATAAACTATCGGGAGCGC
TCGCCAGAAGATATGCGTGCGCGGATATATCCACGCGCTCGCAGGAAGGG
AGCCGTGATCACGAGATGAAGCGTCGGCGGGAGAAAGAGTCCCGAGATGC
CGAACTCGAGAGGCTGCGCCGAGAAACTGCGGCTCTGGCTTCCCGGGTGC
AGACACTCGAGTGCAAGGCGGCGGGACTGCGGGCGTCCGAGGCGCGATCC
TCTTCGGCGCTGGCGAGGGCCGAGGCGGACGCTATGGCGGCGAAGGGAGA
ACTTGAACTCGTCGCGCTAGAGCGCGATCGG back to topCoding sequence (CDS) from alignment at H-elongata_contig8403:2816..5146- >mRNA_H-elongata_contig8403.16013.1 ID=mRNA_H-elongata_contig8403.16013.1|Name=mRNA_H-elongata_contig8403.16013.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4560bp|location=Sequence derived from alignment at H-elongata_contig8403:2816..5146- (Himanthalia elongata Himel1 dioecious) ATGGGAGAGGCCGTAACACAAGCGGGCGCCGCGTCTATCGCCGCGGCATT CTTTCGGAAGCAGGTGGCCGCCTGCGCATGGGCAGATGAAGAACTCCCCA CGTGCACCTTAATCACGAAGAGATCACACGAAACGGGCATATCCGAGGCA TCCTCGCTTCGGTTTCCACTAGGCGTCTGCCACGAGGAGCACGCCCTGGT TTCCTCCGGCAGCGTGCGCGAACTGGTGGTATCTCGTGGGGGGGCGGGAC CCGATTTTTCTCCCAAGGAGAAGCGTGTTTGCGCGAAGGCAGCGGCGCTC CTCGACCAAGCCCTCTGCCGCATCCGTCACGAGGAAGCTCTCGTCGCGAC CAAAGCCGCGCTCGAAAGCTCGCTCCGCGGTATGGAGGAAGCCTCGACGG TTGTCGCTGTGATGACGGAGGAAAGAAAGCAGCGCGTCGAGGTGCACGAG CAAGCGCGCACTGAACTCCGCCAAAATCACGAGCGTGAGCTCTCGGCGGT GAGGGAAGAGCTCCGGCGTTCGTGCGAAGAGGCCTCGGAACTCCAACGTC GGCTACAAAACATGGAGCGGTCGGTTGGTGCAGTGGCGAGCGCCGCGAAC GATCTTTGCCGTGTGGCAGCGATGGGAGAGGCCGTAACACAAGCGGGCGC CGCGTCTATCGCCGCGGCATTCTTTCGGAAGCAGGTGGCCGCCTGCGCAT GGGCAGATGAAGAACTCCCCACGTGCACCTTAATCACGAAGAGATCACAC GAAACGGGCATATCCGAGGCATCCTCGCTTCGGTTTCCACTAGGCGTCTG CCACGAGGAGCACGCCCTGGTTTCCTCCGGCAGCGTGCGCGAACTGGTGG TATCTCGTGGGGGGGCGGGACCCGATTTTTCTCCCAAGGAGAAGCGTGTT TGCGCGAAGGCAGCGGCGCTCCTCGACCAAGCCCTCTGCCGCATCCGTCA CGAGGAAGCTCTCGTCGCGACCAAAGCCGCGCTCGAAAGCTCGCTCCGCG GTATGGAGGAAGCCTCGACGGTTGTCGCTGTGATGACGGAGGAAAGAAAG CAGCGCGTCGAGGTGCACGAGCAAGCGCGCACTGAACTCCGCCAAAATCA CGAGCGTGAGCTCTCGGCGGTGAGGGAAGAGCTCCGGCGTTCGTGCGAAG AGGCCTCGGAACTCCAACGTCGGCTACAAAACATGGAGCGGTCGGTTGGT GCAGTGGCGAGCGCCGCGAACGATCTTTGCCGTGTGGCAGCGGCGATCGC TGCTGAAGATCTGGGGAATGGAAGTGAGACGAGAATGACAGCCTTGGTTG AAGGCGCCGCTCGGAGAGCTCTACGTTGTCCTTACGCTCGAGTGGAGTAT GTATCTGAGCCTAGGTTTCCGACGACTTCGAGGGTTTTCGACGGAGGTTG GCGCGAAGGAAATGGTGGCGGGTTCGGACGATACTCTGTCGAAAGTAAAG AAGATCCTGCAGCAGTTTTCGCCGACAAGAAATGGCCCGGGGCGACTATG CGCATTCCCGTACTCGTCCCGCAGAGCGGTGCCGACGAGGCGCTGGTCCT GTCCATATGCAGTGAGGACCAGTCACGTATGTTCGTGGATGAAGACGACG TTTTGGCTTCCGCCCTCGCCGCATGTCTCGGGACGGCCATTCTCGCGTCC CGAGCAAGACGGCGAGTCCGAGAGCTGGCGGAAGAAACGGATGCCGATCT CGAGGTTCGCCGAGAGCGCGAGCAGGCCGCCAACGCGGCCGCTACCGCCG ACGCTGCCGAGGCGCGGTGCCGTGCCGAGCGCGCCGCAGCTGACACGAGG GCACTGATTACGACCGCCCGGGGGTTGAAAGCTCAGGCGGAGTCTGCGGC CGCGGCTTGTCGCCGAGCGGAGCGACAGACGGAAGCACTGTGGCACCTCC TCGTGGGATTGCACTCGGCCAGGCGCGACCACGCCGCCATCGCCACCGCG GTGACCGAGAGAGCGGTGGCGGTCGTCCCGGCGTGCGAACGCGCCGTGCT TCTTACTCCTCGTCAAGGTCGACGCTGGGAGAAAATGCCAGAGGCAACGG AAGACCGCGATAGGGCCAATTTTTTCTCGCCGGACCCGCGTGTGTGGGCG AGCGCTGCGAGCGGGAAGAGAGGGAGACGAAGTGAGAGGGGCGGAAGAAG CGGGGTTGGCAAGGGGTGGGCGGGGACGATTGAACGAGCCGCGTTGAAGG CGGTGGCGGAAGGCAAGACCGTTTGTGTGCGCGATCGCTTCGACGGCGCC ACTGTCTCGCCTCAACGAGTGTTCTGCTTCTCGCCTCTGTCTCAGTCAGC GATGACGCCACAGCCCGGACGATATTCCCGCGCAGAACGCGGAAGCGAAA ACGTTCGGCCTAAAGGCGGGGACCAGATCGATCGAGTGGATCAAACGGGT TCTGATGCAGATGGCAGTTGTTCTGCCGTGTGCGCAATCGCCTGGGTGTT GCGCCTGAACAAGACTGTCGCTCGAGTTGGATCCCATCCGATTGATGTCG AACCGGTCGCAGCATGGTCTTTACCACCGTTACCAGAACGGGTTTCCACT GTGATCGAAGTCGTAGGCCTCGCTGTCAGTCTTGCTCTGTTTGCGCCCAG TGATAAACTATCGGGAGCGCTCGCCAGAAGATATGCGTGCGCGGATATAT CCACGCGCTCGCAGGAAGGGAGCCGTGATCACGAGATGAAGCGTCGGCGG GAGAAAGAGTCCCGAGATGCCGAACTCGAGAGGCTGCGCCGAGAAACTGC GGCTCTGGCTTCCCGGGTGCAGACACTCGAGTGCAAGGCGGCGGGACTGC GGGCGTCCGAGGCGCGATCCTCTTCGGCGCTGGCGAGGGCCGAGGCGGAC GCTATGGCGGCGAAGGGAGAACTTGAACTCGTCGCGCTAGAGCGCGATCG GGCGATCGCTGCTGAAGATCTGGGGAATGGAAGTGAGACGAGAATGACAG CCTTGGTTGAAGGCGCCGCTCGGAGAGCTCTACGTTGTCCTTACGCTCGA GTGGAGTATGTATCTGAGCCTAGGTTTCCGACGACTTCGAGGGTTTTCGA CGGAGGTTGGCGCGAAGGAAATGGTGGCGGGTTCGGACGATACTCTGTCG AAAGTAAAGAAGATCCTGCAGCAGTTTTCGCCGACAAGAAATGGCCCGGG GCGACTATGCGCATTCCCGTACTCGTCCCGCAGAGCGGTGCCGACGAGGC GCTGGTCCTGTCCATATGCAGTGAGGACCAGTCACGTATGTTCGTGGATG AAGACGACGTTTTGGCTTCCGCCCTCGCCGCATGTCTCGGGACGGCCATT CTCGCGTCCCGAGCAAGACGGCGAGTCCGAGAGCTGGCGGAAGAAACGGA TGCCGATCTCGAGGTTCGCCGAGAGCGCGAGCAGGCCGCCAACGCGGCCG CTACCGCCGACGCTGCCGAGGCGCGGTGCCGTGCCGAGCGCGCCGCAGCT GACACGAGGGCACTGATTACGACCGCCCGGGGGTTGAAAGCTCAGGCGGA GTCTGCGGCCGCGGCTTGTCGCCGAGCGGAGCGACAGACGGAAGCACTGT GGCACCTCCTCGTGGGATTGCACTCGGCCAGGCGCGACCACGCCGCCATC GCCACCGCGGTGACCGAGAGAGCGGTGGCGGTCGTCCCGGCGTGCGAACG CGCCGTGCTTCTTACTCCTCGTCAAGGTCGACGCTGGGAGAAAATGCCAG AGGCAACGGAAGACCGCGATAGGGCCAATTTTTTCTCGCCGGACCCGCGT GTGTGGGCGAGCGCTGCGAGCGGGAAGAGAGGGAGACGAAGTGAGAGGGG CGGAAGAAGCGGGGTTGGCAAGGGGTGGGCGGGGACGATTGAACGAGCCG CGTTGAAGGCGGTGGCGGAAGGCAAGACCGTTTGTGTGCGCGATCGCTTC GACGGCGCCACTGTCTCGCCTCAACGAGTGTTCTGCTTCTCGCCTCTGTC TCAGTCAGCGATGACGCCACAGCCCGGACGATATTCCCGCGCAGAACGCG GAAGCGAAAACGTTCGGCCTAAAGGCGGGGACCAGATCGATCGAGTGGAT CAAACGGGTTCTGATGCAGATGGCAGTTGTTCTGCCGTGTGCGCAATCGC CTGGGTGTTGCGCCTGAACAAGACTGTCGCTCGAGTTGGATCCCATCCGA TTGATGTCGAACCGGTCGCAGCATGGTCTTTACCACCGTTACCAGAACGG GTTTCCACTGTGATCGAAGTCGTAGGCCTCGCTGTCAGTCTTGCTCTGTT TGCGCCCAGTGATAAACTATCGGGAGCGCTCGCCAGAAGATATGCGTGCG CGGATATATCCACGCGCTCGCAGGAAGGGAGCCGTGATCACGAGATGAAG CGTCGGCGGGAGAAAGAGTCCCGAGATGCCGAACTCGAGAGGCTGCGCCG AGAAACTGCGGCTCTGGCTTCCCGGGTGCAGACACTCGAGTGCAAGGCGG CGGGACTGCGGGCGTCCGAGGCGCGATCCTCTTCGGCGCTGGCGAGGGCC GAGGCGGACGCTATGGCGGCGAAGGGAGAACTTGAACTCGTCGCGCTAGA GCGCGATCGG back to top
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