mRNA_H-elongata_contig83805.15998.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83805.15998.1
Unique NamemRNA_H-elongata_contig83805.15998.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig83805.15998.1 vs. uniprot
Match: A0A6H5JPM6_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPM6_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 1.150e-96
Identity = 152/170 (89.41%), Postives = 163/170 (95.88%), Query Frame = 1 
Query:    1 GGNDERENTLNQLLVEMDGFTSNTNVVVLAGTNRVDVLDPALTRAGRFDRQIVVDKPDIQGRKAIFEVHLRGLSLSGEVMYFSGRLAGLTPGFVGADIENLCNEAAIIAARRNKKKIDMEDFEAATDRVIGGLESNKLIMPEEKKIVAYHEAGHAVAGWNLEHADPLLKV 510
            GGNDERENTLNQLLVEMDGF+SNTNVVVLAGTNRVDVLDPALTR GRFDRQI VDKPDI GRKAIFEVHL+GL+L G+   FSGRLAGLTPGFVGADIENLCNEAAI+AARR+KKKI+M+DFE+ATDRVIGGLESNKLIMPEEK+IVAYHEAGHAVAGWNLEHADPL+KV
Sbjct:  559 GGNDERENTLNQLLVEMDGFSSNTNVVVLAGTNRVDVLDPALTRPGRFDRQITVDKPDIMGRKAIFEVHLKGLNLGGKSSEFSGRLAGLTPGFVGADIENLCNEAAIVAARRDKKKIEMDDFESATDRVIGGLESNKLIMPEEKRIVAYHEAGHAVAGWNLEHADPLMKV 728
[Close]
BLAST of mRNA_H-elongata_contig83805.15998.1 vs. uniprot
Match: A0A7S2WKY8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKY8_9STRA)

HSP 1 Score: 284 bits (726), Expect = 5.130e-89
Identity = 139/170 (81.76%), Postives = 154/170 (90.59%), Query Frame = 1 
Query:    1 GGNDERENTLNQLLVEMDGFTSNTNVVVLAGTNRVDVLDPALTRAGRFDRQIVVDKPDIQGRKAIFEVHLRGLSLSGEVMYFSGRLAGLTPGFVGADIENLCNEAAIIAARRNKKKIDMEDFEAATDRVIGGLESNKLIMPEEKKIVAYHEAGHAVAGWNLEHADPLLKV 510
            GGNDERENTLNQLLVEMDGFTS+TN+VVLAGTNRVD+LD AL R GRFDRQI VDKPDIQGRK IFEVHLRGL+L+G V  F+GRLAGLTPGF GADI N+CNEAAI+AARR K +ID+ DFE+ATDRVIGGLE+ K+I PEEK+IVAYHEAGHAVAGW LEHADP+LKV
Sbjct:  364 GGNDERENTLNQLLVEMDGFTSSTNIVVLAGTNRVDILDQALVRPGRFDRQIQVDKPDIQGRKEIFEVHLRGLTLAGPVADFAGRLAGLTPGFAGADIANICNEAAIVAARRKKSQIDISDFESATDRVIGGLETGKIISPEEKRIVAYHEAGHAVAGWFLEHADPILKV 533
[Close]
BLAST of mRNA_H-elongata_contig83805.15998.1 vs. uniprot
Match: A0A835YSU3_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSU3_9STRA)

HSP 1 Score: 279 bits (713), Expect = 2.500e-87
Identity = 135/170 (79.41%), Postives = 152/170 (89.41%), Query Frame = 1 
Query:    1 GGNDERENTLNQLLVEMDGFTSNTNVVVLAGTNRVDVLDPALTRAGRFDRQIVVDKPDIQGRKAIFEVHLRGLSLSGEVMYFSGRLAGLTPGFVGADIENLCNEAAIIAARRNKKKIDMEDFEAATDRVIGGLESNKLIMPEEKKIVAYHEAGHAVAGWNLEHADPLLKV 510
            GGN+ERE+TLNQLLVEMDGF   TN+V+LAGTNR D+LDPAL R GRFDRQI ++ PDI+GRK IFEVHL+GL L G+V  +SGRLAGLTPGF GADI+N+CNEAAI+AARR +K ID+E FEAATDRVIGGLESNKLI PEEK+IVAYHEAGHAVAGWNLEHADPLLKV
Sbjct:  336 GGNNERESTLNQLLVEMDGFNDRTNIVMLAGTNRADILDPALLRPGRFDRQITIELPDIKGRKQIFEVHLKGLKLEGQVSDYSGRLAGLTPGFSGADIQNICNEAAIVAARRGRKTIDLECFEAATDRVIGGLESNKLITPEEKRIVAYHEAGHAVAGWNLEHADPLLKV 505
[Close]
BLAST of mRNA_H-elongata_contig83805.15998.1 vs. uniprot
Match: A0A7S1U0S3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0S3_9STRA)

HSP 1 Score: 265 bits (676), Expect = 9.900e-86
Identity = 131/172 (76.16%), Postives = 153/172 (88.95%), Query Frame = 1 
Query:    1 GGNDERENTLNQLLVEMDGFTSNTNVVVLAGTNRVDVLDPALTRAGRFDRQIVVDKPDIQGRKAIFEVHLRGLSLSGEVMY--FSGRLAGLTPGFVGADIENLCNEAAIIAARRNKKKIDMEDFEAATDRVIGGLESNKLIMPEEKKIVAYHEAGHAVAGWNLEHADPLLKV 510
            GGNDERENTLNQLLVEMDGFTS+TNVVVLAGTNR+D+LD ALTRAGRFDRQI+VD+PDI+GRK +F VH+R L+L GE      +GRLA LTPGFVGADI N+CNEAAI+AAR +KK++++ DFE A DRVIGGLES++L+  +EK+IVAYHEAGHAVAGWNLEHADPLLKV
Sbjct:    8 GGNDERENTLNQLLVEMDGFTSSTNVVVLAGTNRIDILDNALTRAGRFDRQIMVDRPDIRGRKEVFLVHMRNLNLGGETDQDDLAGRLAALTPGFVGADIANICNEAAIMAARDDKKQVELPDFEKAIDRVIGGLESHRLLDKQEKEIVAYHEAGHAVAGWNLEHADPLLKV 179
[Close]
BLAST of mRNA_H-elongata_contig83805.15998.1 vs. uniprot
Match: A0A7S3XWU5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWU5_HETAK)

HSP 1 Score: 271 bits (693), Expect = 3.000e-85
Identity = 136/170 (80.00%), Postives = 149/170 (87.65%), Query Frame = 1 
Query:    1 GGNDERENTLNQLLVEMDGFTSNTNVVVLAGTNRVDVLDPALTRAGRFDRQIVVDKPDIQGRKAIFEVHLRGLSLSGEVMYFSGRLAGLTPGFVGADIENLCNEAAIIAARRNKKKIDMEDFEAATDRVIGGLESNKLIMPEEKKIVAYHEAGHAVAGWNLEHADPLLKV 510
            GGNDERENTLNQLLVEMDGFT+ TNVVVLAGTNRVD+LD ALTR GRFDRQI V +PDIQGRK IF VHL+GL+L+     ++G+LAGLTPGF GADI NLCNEAAI AAR+ K  IDM DFEAA DR+IGGLES+KLI PEEK+IVAYHEAGHAVAGWNLEHADPLLKV
Sbjct:  260 GGNDERENTLNQLLVEMDGFTTTTNVVVLAGTNRVDILDNALTRPGRFDRQITVGRPDIQGRKEIFLVHLKGLNLAEAPETYAGKLAGLTPGFAGADIANLCNEAAIQAARKAKAAIDMADFEAAADRIIGGLESHKLITPEEKRIVAYHEAGHAVAGWNLEHADPLLKV 429
[Close]
BLAST of mRNA_H-elongata_contig83805.15998.1 vs. uniprot
Match: A0A7S3JS57_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS57_9STRA)

HSP 1 Score: 275 bits (704), Expect = 4.270e-85
Identity = 133/170 (78.24%), Postives = 153/170 (90.00%), Query Frame = 1 
Query:    1 GGNDERENTLNQLLVEMDGFTSNTNVVVLAGTNRVDVLDPALTRAGRFDRQIVVDKPDIQGRKAIFEVHLRGLSLSGEVMYFSGRLAGLTPGFVGADIENLCNEAAIIAARRNKKKIDMEDFEAATDRVIGGLESNKLIMPEEKKIVAYHEAGHAVAGWNLEHADPLLKV 510
            GGNDERENTLNQLLVEMDGFT +TNVVVLAGTNRVDVLD ALTR GRFDRQI VDKPDIQGRK IF+VHLRG++L G +  ++ RLAGLTPGF GA+I+N+CNEAAI+AARRNK+K+D  DFEAA DR+IGGLESN+++  +EK+IVA+HEAGHAVAGW LEHADPLLKV
Sbjct:  434 GGNDERENTLNQLLVEMDGFTESTNVVVLAGTNRVDVLDKALTRPGRFDRQITVDKPDIQGRKQIFKVHLRGINLLGSLDDYAARLAGLTPGFAGAEIQNICNEAAIVAARRNKEKVDFSDFEAAADRIIGGLESNRIMTDDEKRIVAFHEAGHAVAGWFLEHADPLLKV 603
[Close]
BLAST of mRNA_H-elongata_contig83805.15998.1 vs. uniprot
Match: A0A7S2YIE0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YIE0_9STRA)

HSP 1 Score: 263 bits (672), Expect = 1.140e-84
Identity = 128/170 (75.29%), Postives = 148/170 (87.06%), Query Frame = 1 
Query:    1 GGNDERENTLNQLLVEMDGFTSNTNVVVLAGTNRVDVLDPALTRAGRFDRQIVVDKPDIQGRKAIFEVHLRGLSLSGEVMYFSGRLAGLTPGFVGADIENLCNEAAIIAARRNKKKIDMEDFEAATDRVIGGLESNKLIMPEEKKIVAYHEAGHAVAGWNLEHADPLLKV 510
            GGNDERENTLNQLLVEMDGF+S+T VVVLAGTNRVD+LD ALTR GRFDRQI VD+PD++GRK IF VHL+G++L G++  F+GRLAGLTPGF GADI NLCNEAAI+AARR    + + DFE ATDR+IGGLESNK++  +EK IVA+HEAGHAVAGW LEHADPLLKV
Sbjct:  207 GGNDERENTLNQLLVEMDGFSSSTGVVVLAGTNRVDILDQALTRPGRFDRQITVDRPDLRGRKEIFLVHLKGITLEGDMEDFAGRLAGLTPGFAGADIANLCNEAAIVAARRKADSVTVADFEKATDRIIGGLESNKIMSDQEKSIVAHHEAGHAVAGWFLEHADPLLKV 376
[Close]
BLAST of mRNA_H-elongata_contig83805.15998.1 vs. uniprot
Match: K0RXW7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXW7_THAOC)

HSP 1 Score: 262 bits (670), Expect = 4.850e-84
Identity = 126/170 (74.12%), Postives = 148/170 (87.06%), Query Frame = 1 
Query:    1 GGNDERENTLNQLLVEMDGFTSNTNVVVLAGTNRVDVLDPALTRAGRFDRQIVVDKPDIQGRKAIFEVHLRGLSLSGEVMYFSGRLAGLTPGFVGADIENLCNEAAIIAARRNKKKIDMEDFEAATDRVIGGLESNKLIMPEEKKIVAYHEAGHAVAGWNLEHADPLLKV 510
            GGNDERENTLNQ+LVEMDGFTS+T VVVLAGTNRVD+LD ALTR GRFDRQI VD PD++GRK I+ +HL+G+ L G+   F+GRLAGLTPGF GADI N+CNEAAI+AARR  + + M+DFE+ATDR+IGGLESNK++  +EK IVA+HEAGHAVAGW LEHADPLLKV
Sbjct:   44 GGNDERENTLNQMLVEMDGFTSSTGVVVLAGTNRVDILDKALTRPGRFDRQITVDLPDLRGRKEIYMIHLKGIKLDGDPEDFAGRLAGLTPGFAGADIANVCNEAAIVAARRKAESVTMDDFESATDRIIGGLESNKIMSNDEKSIVAHHEAGHAVAGWFLEHADPLLKV 213
[Close]
BLAST of mRNA_H-elongata_contig83805.15998.1 vs. uniprot
Match: A0A7S2U6Q7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6Q7_9STRA)

HSP 1 Score: 264 bits (674), Expect = 5.760e-84
Identity = 129/170 (75.88%), Postives = 146/170 (85.88%), Query Frame = 1 
Query:    1 GGNDERENTLNQLLVEMDGFTSNTNVVVLAGTNRVDVLDPALTRAGRFDRQIVVDKPDIQGRKAIFEVHLRGLSLSGEVMYFSGRLAGLTPGFVGADIENLCNEAAIIAARRNKKKIDMEDFEAATDRVIGGLESNKLIMPEEKKIVAYHEAGHAVAGWNLEHADPLLKV 510
            GGNDERENTLNQLLVEMDGF+ +  VVVLAGTNR DVLDPAL R GRFDRQIVVDKPD+QGRK IF+VHLRG+ L GEV   +GRLAGLTPGF GADI N+CNEAAI+AARR  + +  +DFE ATDR++GGLESNK++  EE+ IVA+HEAGHAVAGW LEHADPLLKV
Sbjct:  103 GGNDERENTLNQLLVEMDGFSPSAGVVVLAGTNRADVLDPALLRPGRFDRQIVVDKPDLQGRKEIFQVHLRGIKLEGEVDDVAGRLAGLTPGFAGADIANICNEAAIVAARRKGESVCYDDFERATDRIVGGLESNKIMSKEERSIVAHHEAGHAVAGWFLEHADPLLKV 272
[Close]
BLAST of mRNA_H-elongata_contig83805.15998.1 vs. uniprot
Match: A0A835Z5J8_9STRA (Cell division protease ftsH n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5J8_9STRA)

HSP 1 Score: 271 bits (693), Expect = 1.850e-83
Identity = 132/170 (77.65%), Postives = 150/170 (88.24%), Query Frame = 1 
Query:    1 GGNDERENTLNQLLVEMDGFTSNTNVVVLAGTNRVDVLDPALTRAGRFDRQIVVDKPDIQGRKAIFEVHLRGLSLSGEVMYFSGRLAGLTPGFVGADIENLCNEAAIIAARRNKKKIDMEDFEAATDRVIGGLESNKLIMPEEKKIVAYHEAGHAVAGWNLEHADPLLKV 510
            GGNDERE+TLNQLLVEMDGF   TN+V+LAGTNR D+LDPAL R GRFDRQI V+ PDI+GRK IFEVHL+GL L G+V  +SGRLAGLTPGF GADI+N+CNEAAI+AAR+++  I+++ FE ATDRVIGGLES KLI PEEKKIVAYHEAGHAVAGWNLEHADPLLKV
Sbjct:  454 GGNDERESTLNQLLVEMDGFNERTNIVMLAGTNRADILDPALLRPGRFDRQITVELPDIKGRKQIFEVHLKGLKLEGKVGDYSGRLAGLTPGFSGADIQNICNEAAIVAARKSRTSINLQCFEEATDRVIGGLESKKLITPEEKKIVAYHEAGHAVAGWNLEHADPLLKV 623
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83805.15998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPM6_9PHAE1.150e-9689.41AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2WKY8_9STRA5.130e-8981.76Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YSU3_9STRA2.500e-8779.41P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1U0S3_9STRA9.900e-8676.16Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3XWU5_HETAK3.000e-8580.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3JS57_9STRA4.270e-8578.24Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2YIE0_9STRA1.140e-8475.29Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
K0RXW7_THAOC4.850e-8474.12Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2U6Q7_9STRA5.760e-8475.88Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A835Z5J8_9STRA1.850e-8377.65Cell division protease ftsH n=1 Tax=Tribonema minu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83805contigH-elongata_contig83805:135..2169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.8
Seed ortholog evalue3.8e-82
Seed eggNOG ortholog2880.D7FYY6
Preferred nameAFG3L2
KEGG koko:K08956
GOsGO:0000166,GO:0000902,GO:0000904,GO:0001302,GO:0002181,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0004222,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005745,GO:0006412,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006839,GO:0006851,GO:0006873,GO:0006874,GO:0006875,GO:0006886,GO:0006950,GO:0006952,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007272,GO:0007275,GO:0007399,GO:0007409,GO:0007528,GO:0007568,GO:0007569,GO:0008053,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008366,GO:0009058,GO:0009059,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016462,GO:0016485,GO:0016540,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0019725,GO:0019866,GO:0021675,GO:0022008,GO:0030001,GO:0030003,GO:0030030,GO:0030150,GO:0030154,GO:0030182,GO:0030554,GO:0031090,GO:0031175,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032592,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0034220,GO:0034357,GO:0034613,GO:0034641,GO:0034645,GO:0034982,GO:0035639,GO:0036094,GO:0036444,GO:0040008,GO:0040014,GO:0042221,GO:0042407,GO:0042552,GO:0042592,GO:0042623,GO:0042651,GO:0042692,GO:0042742,GO:0042886,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046907,GO:0048284,GO:0048468,GO:0048518,GO:0048519,GO:0048638,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048747,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050801,GO:0050808,GO:0050829,GO:0050896,GO:0051082,GO:0051146,GO:0051179,GO:0051234,GO:0051239,GO:0051560,GO:0051604,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055001,GO:0055002,GO:0055035,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060004,GO:0060013,GO:0060255,GO:0060401,GO:0061024,GO:0061025,GO:0061061,GO:0061564,GO:0065002,GO:0065007,GO:0065008,GO:0070011,GO:0070509,GO:0070585,GO:0070588,GO:0070727,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072503,GO:0072507,GO:0072511,GO:0072594,GO:0072655,GO:0097002,GO:0097159,GO:0097367,GO:0098542,GO:0098573,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098798,GO:0098800,GO:0120036,GO:0120039,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1905368,GO:1990542
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0465@1,KOG0731@2759
Ec32 ortholog descriptionm-AAA protease subunit, Afg3/Yta10-like protein
Ec32 orthologEc-19_002970.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Hectar predicted targeting categoryother localisation
Exons3
Model size510
Cds size510
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83805.15998.1prot_H-elongata_contig83805.15998.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83805 135..2169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931243.4685657-CDS-H-elongata_contig83805:134..2751622931243.4685657-CDS-H-elongata_contig83805:134..275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83805 135..275 -
1691679756.8173046-CDS-H-elongata_contig83805:134..2751691679756.8173046-CDS-H-elongata_contig83805:134..275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83805 135..275 -
1622931243.490252-CDS-H-elongata_contig83805:939..11411622931243.490252-CDS-H-elongata_contig83805:939..1141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83805 940..1141 -
1691679756.8334603-CDS-H-elongata_contig83805:939..11411691679756.8334603-CDS-H-elongata_contig83805:939..1141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83805 940..1141 -
1622931243.5085976-CDS-H-elongata_contig83805:2002..21691622931243.5085976-CDS-H-elongata_contig83805:2002..2169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83805 2003..2169 -
1691679756.8463752-CDS-H-elongata_contig83805:2002..21691691679756.8463752-CDS-H-elongata_contig83805:2002..2169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83805 2003..2169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83805.15998.1

>prot_H-elongata_contig83805.15998.1 ID=prot_H-elongata_contig83805.15998.1|Name=mRNA_H-elongata_contig83805.15998.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
GGNDERENTLNQLLVEMDGFTSNTNVVVLAGTNRVDVLDPALTRAGRFDR
QIVVDKPDIQGRKAIFEVHLRGLSLSGEVMYFSGRLAGLTPGFVGADIEN
LCNEAAIIAARRNKKKIDMEDFEAATDRVIGGLESNKLIMPEEKKIVAYH
EAGHAVAGWNLEHADPLLKV
back to top

mRNA from alignment at H-elongata_contig83805:135..2169-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83805.15998.1 ID=mRNA_H-elongata_contig83805.15998.1|Name=mRNA_H-elongata_contig83805.15998.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2035bp|location=Sequence derived from alignment at H-elongata_contig83805:135..2169- (Himanthalia elongata Himel1 dioecious)
GGCGGCAATGACGAGAGGGAGAACACGCTGAACCAGCTGCTGGTGGAGAT
GGACGGCTTCACCTCCAACACGAACGTGGTAGTATTGGCGGGCACCAACC
GCGTCGACGTTCTGGACCCCGCGCTCACCAGAGCCGGCCGCTTCGACCGT
CAGATTGTGGTCGACAAGTGAGTACAATAGCTGGACCTTGGGACCAACAT
ATGCATGTCGACAGTACGTGCGGTAACATTGAGCTACGCTTCGAAGTCGC
GAGGGAAATATTTGGTTAGTTTATTTGTTGTAATGTTCTCATGGATATGG
TACCCCACGTCATGGTACCCCACGTCACGTTGCTGTGCCGCACTCTCTCT
CCCTGCGAAGGGAAAAACATCTGGTCGTTTCTGGTTGTTCGTTGTCTCCT
TTCCAGGGCGTAAAGGGGAAGAGGAGGCTAGGGGGTTTCGAGGGGAGTGG
TGGCGTGTTTTTAGGGATAAGGTTTTCCCATGCGCCGGTCGATGAAGGGG
AAGGATAGAAAGTGATGAGCATTTTTTTACTGGCTATGGAGAGAGTTGGC
CTTAAGAGCTAAGCTCTGCCTCGGACATGTGAAGATACGTGGGGGAGGGG
GGGGGGAAGATGTACCTTATTTTGGAGGTTTGGGGTTAGAGAGGGAGGGA
GGAGAGAAGAGACTTGTTGGGGGTTTTGAAACGGGAGTAAGGTAGACAAT
CAGGTTAGCAGGTAAAAAATCGAGCACTCTTGCGGGACTGTCGCTTGCGG
GACTGTTATCGGAAAATATTAACCAAGTTACATATATTATGCACAAAAAA
ATAGATAGCTCGACGTACACAAAAACAAAAACACAAGCAGAGTAAAGCAA
AGACATGCGAAAACATACATGTACTTCGAAGTATATAAGTAGATATTTTT
AAAGACACACACACACACACACAAATATCACGTGTACAAATCGAGAAAAA
ACAACACACGAATCACATACATACACGCAAACCCACAAACGACAAAAAAA
ACGCGTGTATAATGCCAAACCACCACAGACCAGACATCCAGGGTCGCAAG
GCCATTTTCGAGGTTCACCTAAGGGGTCTCAGCCTCTCCGGGGAGGTGAT
GTACTTTTCTGGGCGGCTGGCAGGGCTCACCCCGGGCTTTGTTGGAGCGG
ACATCGAGAACCTCTGCAACGAGGCCGCCATTATCGCTGCCAGGCGCAAC
AAAAAGAAAATTGATATGGAAGACTTCGAGGTGTGTGTGTATATGTATGT
GTGTAAACGTGCGTGTGGTTTTTGTGGGGATATCTGTAAGTTTGTGTGTG
TGTGTGTGTGTGTATTCATTAAATTGCACATAACCGCGCAATCCGGCCCT
GTCGTCCTAGTCCTTCTATGCCACTCGTATTGATGGTGTGTGTGTGTGTG
TATTTAGTAAATTGCACATAACCGCGCAATCCGATTCTGCGATGCTAGTC
CTTCTAGGCTACTCTCTCTACTATACTATTGATACTCCCAATGGTGTATA
TATGTGTGTGTGTTTTGAGTGTTTTTATTTTGTCTGTGTTTTTGAATGTG
CATCTCCCTAAATAATACTAATAATAGCATTATTAGTTATTAGCGTGTTA
GATTATTCTAGTAAGTTCCCTCGCCCCCACGACGACAATCGCAGTAGCCC
TCGCCGAGCCCGGAAGCATGGATTTTGGTGGAGGAAGCAATCGCTCATCC
TAGGAAAAGAGTGGATTTCTGAGAATACCTGCAGAAAAATCGCTCCTCCC
AGTACAAAGCAAACGTGGTTTCACACTGTCCTTGTTCCGACAGTCCCTCG
CCCAACGGCATTACGGGACAGTTTTTCCTCGCGGGTGATTATACAATAGG
ATGTAACACGAGATCCCTGTCCTTCCTTCCCCCGTTCTTTTAAGGCTGCC
ACGGACCGTGTTATCGGAGGCCTGGAGTCGAACAAGCTCATCATGCCGGA
GGAGAAGAAGATCGTGGCGTACCACGAGGCAGGCCACGCGGTTGCTGGAT
GGAACCTCGAGCACGCTGATCCCCTTCTAAAGGTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig83805:135..2169-

>mRNA_H-elongata_contig83805.15998.1 ID=mRNA_H-elongata_contig83805.15998.1|Name=mRNA_H-elongata_contig83805.15998.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig83805:135..2169- (Himanthalia elongata Himel1 dioecious)
GGCGGCAATGACGAGAGGGAGAACACGCTGAACCAGCTGCTGGTGGAGAT
GGACGGCTTCACCTCCAACACGAACGTGGTAGTATTGGCGGGCACCAACC
GCGTCGACGTTCTGGACCCCGCGCTCACCAGAGCCGGCCGCTTCGACCGT
CAGATTGTGGTCGACAAGGCGGCAATGACGAGAGGGAGAACACGCTGAAC
CAGCTGCTGGTGGAGATGGACGGCTTCACCTCCAACACGAACGTGGTAGT
ATTGGCGGGCACCAACCGCGTCGACGTTCTGGACCCCGCGCTCACCAGAG
CCGGCCGCTTCGACCGTCAGATTGTGGTCGACAAACCAGACATCCAGGGT
CGCAAGGCCATTTTCGAGGTTCACCTAAGGGGTCTCAGCCTCTCCGGGGA
GGTGATGTACTTTTCTGGGCGGCTGGCAGGGCTCACCCCGGGCTTTGTTG
GAGCGGACATCGAGAACCTCTGCAACGAGGCCGCCATTATCGCTGCCAGG
CGCAACAAAAAGAAAATTGATATGGAAGACTTCGAGACCAGACATCCAGG
GTCGCAAGGCCATTTTCGAGGTTCACCTAAGGGGTCTCAGCCTCTCCGGG
GAGGTGATGTACTTTTCTGGGCGGCTGGCAGGGCTCACCCCGGGCTTTGT
TGGAGCGGACATCGAGAACCTCTGCAACGAGGCCGCCATTATCGCTGCCA
GGCGCAACAAAAAGAAAATTGATATGGAAGACTTCGAGGCTGCCACGGAC
CGTGTTATCGGAGGCCTGGAGTCGAACAAGCTCATCATGCCGGAGGAGAA
GAAGATCGTGGCGTACCACGAGGCAGGCCACGCGGTTGCTGGATGGAACC
TCGAGCACGCTGATCCCCTTCTAAAGGTCGCTGCCACGGACCGTGTTATC
GGAGGCCTGGAGTCGAACAAGCTCATCATGCCGGAGGAGAAGAAGATCGT
GGCGTACCACGAGGCAGGCCACGCGGTTGCTGGATGGAACCTCGAGCACG
CTGATCCCCTTCTAAAGGTC
back to top