mRNA_H-elongata_contig83556.15984.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83556.15984.1
Unique NamemRNA_H-elongata_contig83556.15984.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83556.15984.1 vs. uniprot
Match: A0A6H5K2T9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T9_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.350e-14
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 LYACFIDVTKVYDSVDRNLLWTVLPRFGSPQKIMSAIRQFHDGM 132
            ++ACF+D+TK YDSVDR+LLW VL RFG P K+++ IR FH+GM
Sbjct:   19 VFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGM 62
[Close]
BLAST of mRNA_H-elongata_contig83556.15984.1 vs. uniprot
Match: A0A6H5JVV7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVV7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.670e-14
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 LYACFIDVTKVYDSVDRNLLWTVLPRFGSPQKIMSAIRQFHDGM 132
            ++ACF+D+TK YDSVDR+LLW VL RFG P K+++ IR FH+GM
Sbjct:   19 VFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGM 62
[Close]
BLAST of mRNA_H-elongata_contig83556.15984.1 vs. uniprot
Match: A0A6H5KS16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS16_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 6.300e-14
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 LYACFIDVTKVYDSVDRNLLWTVLPRFGSPQKIMSAIRQFHDGM 132
            ++ACF+D+TK YDSVDR+LLW VL RFG P K+++ IR FH+GM
Sbjct:  128 VFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGM 171
[Close]
BLAST of mRNA_H-elongata_contig83556.15984.1 vs. uniprot
Match: A0A6H5L6C1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.620e-14
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 LYACFIDVTKVYDSVDRNLLWTVLPRFGSPQKIMSAIRQFHDGM 132
            ++ACF+D+TK YDSVDR+LLW VL RFG P K+++ IR FH+GM
Sbjct:  104 VFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGM 147
[Close]
BLAST of mRNA_H-elongata_contig83556.15984.1 vs. uniprot
Match: A0A6H5JWA1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.770e-14
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 LYACFIDVTKVYDSVDRNLLWTVLPRFGSPQKIMSAIRQFHDGM 132
            ++ACF+D+TK YDSVDR+LLW VL RFG P K+++ IR FH+GM
Sbjct:  103 VFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGM 146
[Close]
BLAST of mRNA_H-elongata_contig83556.15984.1 vs. uniprot
Match: A0A6H5JNA6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.090e-13
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 LYACFIDVTKVYDSVDRNLLWTVLPRFGSPQKIMSAIRQFHDGM 132
            ++ACF+D+TK YDSVDR+LLW VL RFG P K+++ IR FH+GM
Sbjct:   65 VFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGM 108
[Close]
BLAST of mRNA_H-elongata_contig83556.15984.1 vs. uniprot
Match: A0A6H5KQ73_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ73_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.480e-13
Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 LYACFIDVTKVYDSVDRNLLWTVLPRFGSPQKIMSAIRQFHDGM 132
            ++ACF+D+TK YDSVDR+LLW VL RFG P K+++AIR FH+GM
Sbjct:  193 VFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAAIRHFHEGM 236
[Close]
BLAST of mRNA_H-elongata_contig83556.15984.1 vs. uniprot
Match: A0A6H5K6T0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T0_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.030e-13
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 LYACFIDVTKVYDSVDRNLLWTVLPRFGSPQKIMSAIRQFHDGM 132
            L+ACF+D+TK YDSVDR+LLW VL RFG P K+++ IR FH+GM
Sbjct:  588 LFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGM 631
[Close]
BLAST of mRNA_H-elongata_contig83556.15984.1 vs. uniprot
Match: A0A6H5K401_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K401_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.320e-13
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 LYACFIDVTKVYDSVDRNLLWTVLPRFGSPQKIMSAIRQFHDGM 132
            ++ACF+D+TK YDSVDR+LLW VL RFG P K+++ IR FH GM
Sbjct:   19 VFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHKGM 62
[Close]
BLAST of mRNA_H-elongata_contig83556.15984.1 vs. uniprot
Match: A0A6H5KMK7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.630e-13
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 LYACFIDVTKVYDSVDRNLLWTVLPRFGSPQKIMSAIRQFHDGM 132
            ++ACF+D+TK YDSVDR+LLW VL RFG P K+++ IR FH+GM
Sbjct:  154 VFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGM 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83556.15984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2T9_9PHAE1.350e-1463.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JVV7_9PHAE4.670e-1463.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KS16_9PHAE6.300e-1463.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L6C1_9PHAE8.620e-1463.64Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWA1_9PHAE8.770e-1463.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JNA6_9PHAE1.090e-1363.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KQ73_9PHAE1.480e-1365.91Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K6T0_9PHAE2.030e-1365.91Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K401_9PHAE2.320e-1363.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KMK7_9PHAE2.630e-1363.64Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83556contigH-elongata_contig83556:2099..2233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.1
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog13735.ENSPSIP00000000063
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48ICJ@7711,49G95@7742,4CMJX@8459,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931241.694977-CDS-H-elongata_contig83556:2098..22331622931241.694977-CDS-H-elongata_contig83556:2098..2233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83556 2099..2233 -
1691679756.2272599-CDS-H-elongata_contig83556:2098..22331691679756.2272599-CDS-H-elongata_contig83556:2098..2233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83556 2099..2233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83556.15984.1prot_H-elongata_contig83556.15984.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83556 2099..2233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83556.15984.1

>prot_H-elongata_contig83556.15984.1 ID=prot_H-elongata_contig83556.15984.1|Name=mRNA_H-elongata_contig83556.15984.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
LYACFIDVTKVYDSVDRNLLWTVLPRFGSPQKIMSAIRQFHDGM*
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mRNA from alignment at H-elongata_contig83556:2099..2233-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83556.15984.1 ID=mRNA_H-elongata_contig83556.15984.1|Name=mRNA_H-elongata_contig83556.15984.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig83556:2099..2233- (Himanthalia elongata Himel1 dioecious)
TTGTATGCATGCTTTATCGACGTTACCAAAGTGTACGACTCCGTTGACCG
AAACCTCCTCTGGACAGTACTTCCCCGTTTTGGCTCACCACAGAAGATTA
TGTCGGCTATTCGTCAATTCCATGATGGTATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig83556:2099..2233-

>mRNA_H-elongata_contig83556.15984.1 ID=mRNA_H-elongata_contig83556.15984.1|Name=mRNA_H-elongata_contig83556.15984.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig83556:2099..2233- (Himanthalia elongata Himel1 dioecious)
TTGTATGCATGCTTTATCGACGTTACCAAAGTGTACGACTCCGTTGACCG
AAACCTCCTCTGGACAGTACTTCCCCGTTTTGGCTCACCACAGAAGATTA
TGTCGGCTATTCGTCAATTCCATGATGGTATGTGATTGTATGCATGCTTT
ATCGACGTTACCAAAGTGTACGACTCCGTTGACCGAAACCTCCTCTGGAC
AGTACTTCCCCGTTTTGGCTCACCACAGAAGATTATGTCGGCTATTCGTC
AATTCCATGATGGTATGTGA
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