mRNA_H-elongata_contig8325.15963.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8325.15963.1
Unique NamemRNA_H-elongata_contig8325.15963.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8325.15963.1 vs. uniprot
Match: A0A6H5JZ10_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ10_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.710e-66
Identity = 96/134 (71.64%), Postives = 115/134 (85.82%), Query Frame = 1
Query:    1 MQEWNKIAHDFLKSSRTGSQCATHWRMVLKPSLLKGVWSPEEDAAIFDCIARGVSDWSEVASFLPKRKAKHCRERWNHHLDPALSSG-NWTPEEETQLLSAVEAHGTNWNMVARQLPGRTELIIQQQWNAIVLR 399
            +QEWNKIAH FLK SRTG+QCATHW+MV+KP+LLKGVWSPEEDA IFDC+ARGV+DW+EVA+ LPKRK KHCRERW++HLDP L  G  WT  EE +L+SAVEA+GTNW+++AR  PGR+E +IQQ WN IV R
Sbjct:    6 LQEWNKIAHHFLKGSRTGTQCATHWKMVVKPALLKGVWSPEEDAVIFDCVARGVTDWAEVAAALPKRKPKHCRERWSNHLDPNLRKGPGWTAAEEVKLVSAVEANGTNWSLIARHFPGRSEAVIQQHWNEIVFR 139          
BLAST of mRNA_H-elongata_contig8325.15963.1 vs. uniprot
Match: D8LKA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKA8_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 1.300e-63
Identity = 93/132 (70.45%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    7 EWNKIAHDFLKSSRTGSQCATHWRMVLKPSLLKGVWSPEEDAAIFDCIARGVSDWSEVASFLPKRKAKHCRERWNHHLDPALSSG-NWTPEEETQLLSAVEAHGTNWNMVARQLPGRTELIIQQQWNAIVLR 399
            EWNKIAH FLK SRTG+QCATHW+MV+KP+LLKGVWS EEDA IFDC+ARGV+DW+EVA+ LPKRK KHCRERW++HLDP+L  G  WT  EE +L+SAVEA+GTNW+++AR  PGR+E +IQQ WN +V R
Sbjct:  145 EWNKIAHHFLKGSRTGTQCATHWKMVVKPALLKGVWSAEEDAVIFDCVARGVTDWTEVAAALPKRKPKHCRERWSNHLDPSLRKGPGWTAAEEVKLVSAVEANGTNWSLIARHFPGRSEAVIQQHWNELVFR 276          
BLAST of mRNA_H-elongata_contig8325.15963.1 vs. uniprot
Match: A0A2R5GBT4_9STRA (Transcription factor MYB3R-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBT4_9STRA)

HSP 1 Score: 137 bits (344), Expect = 5.280e-35
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    4 QEWNKIAHDFLKSSRTGSQCATHWRMVLKPSLLKGVWSPEEDAAIFDCIARGVSDWSEVASFLPKRKAKHCRERWNHHLDPALSSGNWTPEEETQLLSAVEAHGTNWNMVARQLPGRTELIIQQQWNAIVLR 399
            + W +I+ +FL   R+  QC   W+ VLKP L+KG W+ EED  I + I  GV+ WSE+A+ +P R  K CRERW +HLDP++  G WT EE+  L+   E  G  W  +A+ LPGR+E  ++ +WN+ + R
Sbjct:   12 RNWKRISQEFLNGKRSDVQCLHRWQKVLKPGLIKGPWTKEEDDTIMEAIESGVTKWSEIATLIPGRIGKQCRERWFNHLDPSIKKGGWTEEEDRILVEYQEKLGNRWCEIAKVLPGRSENAVKNRWNSAMRR 143          
BLAST of mRNA_H-elongata_contig8325.15963.1 vs. uniprot
Match: A0A7S3LND3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LND3_9STRA)

HSP 1 Score: 129 bits (324), Expect = 4.340e-34
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    4 QEWNKIAHDFLKSSRTGSQCATHWRMVLKPSLLKGVWSPEEDAAIFDCIARGVSDWSEVASFLPKRKAKHCRERWNHHLDPALSSGNWTPEEETQLLSAVEAHGTNWNMVARQLPGRTELIIQQQWN 384
            + W +I+   +   R+  QC   W+ VL+P L+KG W+ EED  +  CI  G+  WSE+AS++P R  K CRERW +HLDP +  G+WT EE+ +L  A   +G  W+ +A  +PGRTE  ++ +WN
Sbjct:   30 KNWKRIS--LVVPGRSDVQCLHRWQKVLRPGLVKGPWTKEEDDTVRRCIETGIKKWSEIASYVPGRIGKQCRERWFNHLDPTILKGSWTKEEDEKLFKAQAEYGNRWSFIATLIPGRTENAVKNRWN 154          
BLAST of mRNA_H-elongata_contig8325.15963.1 vs. uniprot
Match: A0A835Z2Q0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q0_9STRA)

HSP 1 Score: 124 bits (310), Expect = 9.620e-34
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 1
Query:   43 SRTGSQCATHWRMVLKPSLLKGVWSPEEDAAIFDCIARGVSDWSEVASFLPKRKAKHCRERWNHHLDPALSSGNWTPEEETQLLSAVEAHGTNWNMVARQLPGRTELIIQQQWNA 387
            ++T +QC   WR  L+P + KG W  EEDA + D + RG   WSE A  +P R AK CRERW HHLDPA+S   +TP E+  +++   A G  W  +A +LPGRTE  ++ +W A
Sbjct:   30 TKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRWTA 144          
BLAST of mRNA_H-elongata_contig8325.15963.1 vs. uniprot
Match: A0A2R5GS76_9STRA (Transcription factor MYB3R-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GS76_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.860e-33
Identity = 57/133 (42.86%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    4 QEWNKIAHDFLKSSRTGSQCATHWRMVLKPSLLKGVWSPEEDAAIFDCIARGVSDWSEVASFLPKRKAKHCRERWNHHLDPALSSGNWTPEEETQLLSAVEAHGTNWNMVAR-QLPGRTELIIQQQWNAIVLR 399
            + W +IA ++L  +RT  QC   W+ VL+P L+KG W PEED  I  CI  G++ WSE+A+ +P R  K CRERW +HLDP + +  WT EE+  L+      G  W+ +A+  LPGR E  ++ +WNA   R
Sbjct:  154 RNWKRIASEYLADTRTDVQCLHRWQKVLRPGLVKGPWQPEEDETIRACIRSGITRWSEIATRVPGRIGKQCRERWFNHLDPNIRTDEWTEEEDQLLIEGQSKLGNKWSQIAKIYLPGRPENAVKNRWNAATRR 286          
BLAST of mRNA_H-elongata_contig8325.15963.1 vs. uniprot
Match: A0A2R5G768_9STRA (Transcription factor MYB3R-4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G768_9STRA)

HSP 1 Score: 131 bits (329), Expect = 8.330e-33
Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    7 EWNKIAHDFLKSSRTGSQCATHWRMVLKPSLLKGVWSPEEDAAIFDCIARGVSDWSEVASFLPKRKAKHCRERWNHHLDPALSSGNWTPEEETQLLSAVEAHGTNWNMVARQLPGRTELIIQQQWNAIVLR 399
            +W KI+ ++L   R+  QC   W+ VL+P L+KG W+ EED  I  CI R ++ WSE+A  +P R  K CRERW +HLDP +    WT EEE  L++A    G  W  +A+ LPGR E  ++ +WN+ + R
Sbjct:  194 KWKKISEEYLGGRRSDVQCLHRWQKVLRPGLVKGPWTEEEDNMIRACIERKITKWSEIAERIPGRIGKQCRERWFNHLDPTIDHSAWTEEEEKVLVTAQATFGNRWCEIAKLLPGRPENAVKNRWNSAIRR 324          
BLAST of mRNA_H-elongata_contig8325.15963.1 vs. uniprot
Match: A0A5A8DBZ9_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DBZ9_CAFRO)

HSP 1 Score: 128 bits (321), Expect = 1.170e-32
Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    4 QEWNKIAHDFLKSSRTGSQCATHWRMVLKPSLLKGVWSPEEDAAIFDCIARGVSDWSEVASFLPKRKAKHCRERWNHHLDPALSSGNWTPEEETQLLSAVEAHGTNWNMVARQLPGRTELIIQQQWNAIVLR 399
            + W +I+ ++L+  RT  QC   W+ VL+P L+KG W+ EED  I +CI  G++ WSE++  +P R  K CRERW +HLDP++    W+ EE+  L  A  + G  W  +A+ LPGR+E  ++ +WN+ + R
Sbjct:   29 KNWKRISEEYLQGRRTDVQCLHRWQKVLRPGLVKGPWTTEEDQVIVNCINAGITKWSEISERIPGRIGKQCRERWFNHLDPSIKKDPWSAEEDRILEEAQCSIGNKWCEIAKLLPGRSENSVKNRWNSAMRR 160          
BLAST of mRNA_H-elongata_contig8325.15963.1 vs. uniprot
Match: A0A7S0VPJ2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VPJ2_9CRYP)

HSP 1 Score: 120 bits (302), Expect = 6.050e-32
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    4 QEWNKIAHDFLKSSRTGSQCATHWRMVLKPSLLKGVWSPEEDAAIFDCIAR-GVSDWSEVASFLPKRKAKHCRERWNHHLDPALSSGNWTPEEETQLLSAVEAHGTNWNMVARQLPGRTELIIQQQWNAIVLR 399
            + W K+A +     RT  QC   W+ VL P L+KG W+ EED  +   + R G + WS +ASFLP R  K CRERW++HL+P +    W+ EE+  ++ A   HG  W  +A  LPGRT+  I+  WN+ + R
Sbjct:   60 KSWKKVAEEL--KFRTDVQCLHRWQKVLNPELIKGPWTKEEDDTVVKLVHRHGPTKWSLIASFLPGRIGKQCRERWHNHLNPDIRKEEWSVEEDCTIIHATRVHGKKWARIANFLPGRTDNAIKNHWNSTMKR 190          
BLAST of mRNA_H-elongata_contig8325.15963.1 vs. uniprot
Match: A0A7S0LVI9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LVI9_9CRYP)

HSP 1 Score: 123 bits (308), Expect = 6.730e-32
Identity = 56/133 (42.11%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    4 QEWNKIAHDFLKSSRTGSQCATHWRMVLKPSLLKGVWSPEEDAAIFDCIAR-GVSDWSEVASFLPKRKAKHCRERWNHHLDPALSSGNWTPEEETQLLSAVEAHGTNWNMVARQLPGRTELIIQQQWNAIVLR 399
            + W K+A       RT  QC   W+ VL P L+KG WS EED  +   + + G   WS +ASFLP R  K CRERW++HL+P +    WT EE+  +++A   HGT W  +A  LPGRT+  I+  WN+ + R
Sbjct:   53 KNWKKVAEGL--EGRTDVQCLHRWQKVLNPDLVKGPWSKEEDDTVMHLVHKYGPKKWSLIASFLPGRIGKQCRERWHNHLNPDIKKECWTQEEDALIINAHRVHGTKWAKIAALLPGRTDNAIKNHWNSTMKR 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8325.15963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ10_9PHAE1.710e-6671.64MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LKA8_ECTSI1.300e-6370.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5GBT4_9STRA5.280e-3543.18Transcription factor MYB3R-2 n=1 Tax=Hondaea ferme... [more]
A0A7S3LND3_9STRA4.340e-3441.73Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A835Z2Q0_9STRA9.620e-3445.22Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A2R5GS76_9STRA1.860e-3342.86Transcription factor MYB3R-2 n=1 Tax=Hondaea ferme... [more]
A0A2R5G768_9STRA8.330e-3342.75Transcription factor MYB3R-4 n=1 Tax=Hondaea ferme... [more]
A0A5A8DBZ9_CAFRO1.170e-3240.15Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7S0VPJ2_9CRYP6.050e-3240.60Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0LVI9_9CRYP6.730e-3242.11Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8325contigH-elongata_contig8325:6661..7059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.5
Seed ortholog evalue2.9e-53
Seed eggNOG ortholog2880.D8LKA8
Preferred nameBAS1
KEGG koko:K09420,ko:K09422,ko:K09423,ko:K21769
KEGG Pathwayko04151,ko04218,ko05166,map04151,map04218,map05166
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000976,GO:0000981,GO:0000988,GO:0000989,GO:0001046,GO:0001047,GO:0001067,GO:0001076,GO:0001134,GO:0001135,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044085,GO:0044212,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048285,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051225,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070925,GO:0071840,GO:0080090,GO:0090307,GO:0097159,GO:0140014,GO:0140110,GO:1901363,GO:1902680,GO:1902850,GO:1903047,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-01_009570.1
Exons1
Model size399
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931240.0609696-CDS-H-elongata_contig8325:6660..70591622931240.0609696-CDS-H-elongata_contig8325:6660..7059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8325 6661..7059 -
1691679755.710492-CDS-H-elongata_contig8325:6660..70591691679755.710492-CDS-H-elongata_contig8325:6660..7059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8325 6661..7059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8325.15963.1prot_H-elongata_contig8325.15963.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8325 6661..7059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8325.15963.1

>prot_H-elongata_contig8325.15963.1 ID=prot_H-elongata_contig8325.15963.1|Name=mRNA_H-elongata_contig8325.15963.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MQEWNKIAHDFLKSSRTGSQCATHWRMVLKPSLLKGVWSPEEDAAIFDCI
ARGVSDWSEVASFLPKRKAKHCRERWNHHLDPALSSGNWTPEEETQLLSA
VEAHGTNWNMVARQLPGRTELIIQQQWNAIVLR
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mRNA from alignment at H-elongata_contig8325:6661..7059-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8325.15963.1 ID=mRNA_H-elongata_contig8325.15963.1|Name=mRNA_H-elongata_contig8325.15963.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig8325:6661..7059- (Himanthalia elongata Himel1 dioecious)
ATGCAGGAATGGAACAAGATCGCCCACGATTTCTTGAAGAGCTCCCGGAC GGGCAGCCAGTGCGCCACTCACTGGAGAATGGTACTGAAGCCCTCCCTGC TCAAAGGGGTTTGGTCACCGGAAGAGGACGCCGCGATCTTTGACTGTATC GCTCGCGGCGTCAGCGACTGGTCGGAGGTGGCGTCTTTCCTCCCAAAGCG AAAGGCGAAGCATTGTCGCGAGCGTTGGAACCACCACCTTGATCCAGCCC TGAGTAGCGGCAATTGGACTCCCGAGGAAGAAACGCAACTCCTCAGCGCC GTCGAAGCTCACGGCACGAACTGGAACATGGTCGCCCGCCAGCTTCCTGG CCGCACTGAGCTGATCATCCAGCAGCAGTGGAACGCGATCGTGCTTCGT
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Coding sequence (CDS) from alignment at H-elongata_contig8325:6661..7059-

>mRNA_H-elongata_contig8325.15963.1 ID=mRNA_H-elongata_contig8325.15963.1|Name=mRNA_H-elongata_contig8325.15963.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig8325:6661..7059- (Himanthalia elongata Himel1 dioecious)
ATGCAGGAATGGAACAAGATCGCCCACGATTTCTTGAAGAGCTCCCGGAC
GGGCAGCCAGTGCGCCACTCACTGGAGAATGGTACTGAAGCCCTCCCTGC
TCAAAGGGGTTTGGTCACCGGAAGAGGACGCCGCGATCTTTGACTGTATC
GCTCGCGGCGTCAGCGACTGGTCGGAGGTGGCGTCTTTCCTCCCAAAGCG
AAAGGCGAAGCATTGTCGCGAGCGTTGGAACCACCACCTTGATCCAGCCC
TGAGTAGCGGCAATTGGACTCCCGAGGAAGAAACGCAACTCCTCAGCGCC
GTCGAAGCTCACGGCACGAACTGGAACATGGTCGCCCGCCAGCTTCCTGG
CCGCACTGAGCTGATCATCCAGCAGCAGTGGAACGCGATCGTGCTTCGTA
TGCAGGAATGGAACAAGATCGCCCACGATTTCTTGAAGAGCTCCCGGACG
GGCAGCCAGTGCGCCACTCACTGGAGAATGGTACTGAAGCCCTCCCTGCT
CAAAGGGGTTTGGTCACCGGAAGAGGACGCCGCGATCTTTGACTGTATCG
CTCGCGGCGTCAGCGACTGGTCGGAGGTGGCGTCTTTCCTCCCAAAGCGA
AAGGCGAAGCATTGTCGCGAGCGTTGGAACCACCACCTTGATCCAGCCCT
GAGTAGCGGCAATTGGACTCCCGAGGAAGAAACGCAACTCCTCAGCGCCG
TCGAAGCTCACGGCACGAACTGGAACATGGTCGCCCGCCAGCTTCCTGGC
CGCACTGAGCTGATCATCCAGCAGCAGTGGAACGCGATCGTGCTTCGT
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