mRNA_H-elongata_contig83245.15961.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83245.15961.1
Unique NamemRNA_H-elongata_contig83245.15961.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83245.15961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83245contigH-elongata_contig83245:835..1344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size511
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931239.8186939-CDS-H-elongata_contig83245:834..11671622931239.8186939-CDS-H-elongata_contig83245:834..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83245 835..1167 +
1691679755.5684936-CDS-H-elongata_contig83245:834..11671691679755.5684936-CDS-H-elongata_contig83245:834..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83245 835..1167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931239.8350458-UTR-H-elongata_contig83245:1167..13441622931239.8350458-UTR-H-elongata_contig83245:1167..1344Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83245 1168..1344 +
1691679755.58556-UTR-H-elongata_contig83245:1167..13441691679755.58556-UTR-H-elongata_contig83245:1167..1344Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83245 1168..1344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83245.15961.1prot_H-elongata_contig83245.15961.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83245 835..1167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83245.15961.1

>prot_H-elongata_contig83245.15961.1 ID=prot_H-elongata_contig83245.15961.1|Name=mRNA_H-elongata_contig83245.15961.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
SCRSRYTRVLCCYASITGHVVSAAAEAIQFPSVIFWIYRGRRSYTSSRKN
GIVVEYDSCLFLKTNPHERNHSCVRVGPTPNLFLGSERVVSENFIRREHL
LASTVEFPGS*
back to top

mRNA from alignment at H-elongata_contig83245:835..1344+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83245.15961.1 ID=mRNA_H-elongata_contig83245.15961.1|Name=mRNA_H-elongata_contig83245.15961.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at H-elongata_contig83245:835..1344+ (Himanthalia elongata Himel1 dioecious)
TCCTGTCGTTCGAGATACACACGAGTATTGTGTTGCTACGCATCGATTAC
TGGGCACGTTGTCTCCGCTGCAGCTGAGGCAATTCAGTTCCCATCGGTTA
TATTTTGGATATACAGAGGTCGGCGTAGTTACACGTCGTCCCGAAAAAAC
GGAATTGTAGTTGAATACGATAGCTGCCTGTTTCTAAAAACGAATCCTCA
CGAACGAAACCACTCTTGTGTTCGTGTGGGCCCTACCCCAAATTTGTTTC
TCGGAAGTGAAAGGGTAGTGTCCGAAAACTTCATCCGCCGCGAACATTTG
CTAGCGAGTACCGTAGAATTCCCCGGTTCATGAGCATGCAACCCTCCCCC
CTCAAAAAAAAATATCCCGTTCGGCCGCATTGCACACGGAGACCCCCCTC
CCCAATCCCAGCTCCAGAAAAGGGCAAGTGCCCCGTGATTATATCCCCAC
GAAAACTTTCCCCGCGACCGGAGAGACTCCCCCCACCCGATTTTTAGTAC
TCCCTCCCCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig83245:835..1344+

>mRNA_H-elongata_contig83245.15961.1 ID=mRNA_H-elongata_contig83245.15961.1|Name=mRNA_H-elongata_contig83245.15961.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig83245:835..1344+ (Himanthalia elongata Himel1 dioecious)
TCCTGTCGTTCGAGATACACACGAGTATTGTGTTGCTACGCATCGATTAC
TGGGCACGTTGTCTCCGCTGCAGCTGAGGCAATTCAGTTCCCATCGGTTA
TATTTTGGATATACAGAGGTCGGCGTAGTTACACGTCGTCCCGAAAAAAC
GGAATTGTAGTTGAATACGATAGCTGCCTGTTTCTAAAAACGAATCCTCA
CGAACGAAACCACTCTTGTGTTCGTGTGGGCCCTACCCCAAATTTGTTTC
TCGGAAGTGAAAGGGTAGTGTCCGAAAACTTCATCCGCCGCGAACATTTG
CTAGCGAGTACCGTAGAATTCCCCGGTTCATGATCCTGTCGTTCGAGATA
CACACGAGTATTGTGTTGCTACGCATCGATTACTGGGCACGTTGTCTCCG
CTGCAGCTGAGGCAATTCAGTTCCCATCGGTTATATTTTGGATATACAGA
GGTCGGCGTAGTTACACGTCGTCCCGAAAAAACGGAATTGTAGTTGAATA
CGATAGCTGCCTGTTTCTAAAAACGAATCCTCACGAACGAAACCACTCTT
GTGTTCGTGTGGGCCCTACCCCAAATTTGTTTCTCGGAAGTGAAAGGGTA
GTGTCCGAAAACTTCATCCGCCGCGAACATTTGCTAGCGAGTACCGTAGA
ATTCCCCGGTTCATGA
back to top