mRNA_H-elongata_contig83162.15953.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83162.15953.1
Unique NamemRNA_H-elongata_contig83162.15953.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83162.15953.1 vs. uniprot
Match: D8LBK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK7_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 2.640e-46
Identity = 86/106 (81.13%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 IGLLATVGVAEVAIIPRPRVGIMSTGNELVEPGENISGGFIRDSNRSTLLAAVESMGGLSVDLGIVKDKQTSLRDAVMAGLEQCDVLVTSGGVSMGEADLLKSILE 318
            IGLLATVGVA+  +IPRPRVG+MSTG+ELVEPGE I GGFIRDSNR+TLLAAV SMGG+ VDLGIVKDK+ +L+ AV A LEQCDVLVTSGGVSMGEADLLK ILE
Sbjct:  183 IGLLATVGVADAPVIPRPRVGVMSTGDELVEPGEKICGGFIRDSNRATLLAAVASMGGVPVDLGIVKDKEATLKGAVEAALEQCDVLVTSGGVSMGEADLLKPILE 288
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BLAST of mRNA_H-elongata_contig83162.15953.1 vs. uniprot
Match: A0A6H5K7N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N4_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 3.570e-46
Identity = 86/106 (81.13%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:    1 IGLLATVGVAEVAIIPRPRVGIMSTGNELVEPGENISGGFIRDSNRSTLLAAVESMGGLSVDLGIVKDKQTSLRDAVMAGLEQCDVLVTSGGVSMGEADLLKSILE 318
            IGLLATVGVA+  +IPRPRVG+MSTG+ELVEPG+ ISGGFIRDSNR+TLLAAV SMGG+ VDLGIVKDK+ +L+ AV A LEQCDVLVTSGGVSMGEADLLK ILE
Sbjct:  332 IGLLATVGVADAPVIPRPRVGVMSTGDELVEPGDKISGGFIRDSNRATLLAAVASMGGVPVDLGIVKDKEATLKGAVEAALEQCDVLVTSGGVSMGEADLLKPILE 437
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BLAST of mRNA_H-elongata_contig83162.15953.1 vs. uniprot
Match: A0A835YS15_9STRA (MoeA N-terminal region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS15_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.530e-35
Identity = 70/106 (66.04%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 IGLLATVGVAEVAIIPRPRVGIMSTGNELVEPGENISGGFIRDSNRSTLLAAVESMGGLSVDLGIVKDKQTSLRDAVMAGLEQCDVLVTSGGVSMGEADLLKSILE 318
            +GLLAT G+A V I P P VGIMSTG+ELVEPGE+ISGG IRDSNR+TLLA V++ G  +VDLGIV+D    L +A+   L++CDV+VTSGGVSMGEADL+K +LE
Sbjct:  191 VGLLATCGIATVTITPLPVVGIMSTGDELVEPGESISGGMIRDSNRATLLAFVKAQGATAVDLGIVRDVAGGLEEALKDALQRCDVVVTSGGVSMGEADLIKPLLE 296
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BLAST of mRNA_H-elongata_contig83162.15953.1 vs. uniprot
Match: A0A3L7X231_9CHLR (Molybdopterin molybdenumtransferase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7X231_9CHLR)

HSP 1 Score: 124 bits (312), Expect = 7.790e-32
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 1 
Query:    1 IGLLATVGVAEVAIIPRPRVGIMSTGNELVEPGENISGGFIRDSNRSTLLAAVESMGGLSVDLGIVKDKQTSLRDAVMAGLEQCDVLVTSGGVSMGEADLLKSILE 318
            IGLLAT GV +V + PRP+V ++STG+ELVEPG  +  G IRDSNR+ L+AA++++GG +VDLGI  D Q SL  +V  GL + DVL+TSGGVSMG+ DL+K +LE
Sbjct:  164 IGLLATAGVTDVLVYPRPKVAVLSTGDELVEPGTPLEPGQIRDSNRAMLIAAIQAVGGEAVDLGISGDSQASLEASVQGGLAKADVLLTSGGVSMGDLDLIKPLLE 269
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BLAST of mRNA_H-elongata_contig83162.15953.1 vs. uniprot
Match: A0A3M1FS57_9CHLR (Molybdopterin molybdenumtransferase (Fragment) n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1FS57_9CHLR)

HSP 1 Score: 122 bits (305), Expect = 8.200e-32
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:    1 IGLLATVGVAEVAIIPRPRVGIMSTGNELVEPGENISGGFIRDSNRSTLLAAVESMGGLSVDLGIVKDKQTSLRDAVMAGLEQCDVLVTSGGVSMGEADLLKSILE 318
            IGLLATVG  EV + PRPRV ++STG+ELVE G+ +  G IRDSNR TLLA VE+ GG  VDLGI  D Q  L   +  GL + DVL+T+GGVSMG+ DL+K ILE
Sbjct:   39 IGLLATVGAVEVPVHPRPRVAVLSTGDELVELGQPLGPGQIRDSNRYTLLAGVEAAGGCGVDLGIAGDSQAELEAKLARGLHEADVLLTTGGVSMGDLDLIKPILE 144
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BLAST of mRNA_H-elongata_contig83162.15953.1 vs. uniprot
Match: A0A6N8WBR8_9CHLR (Molybdopterin molybdenumtransferase n=3 Tax=unclassified Caldilineaceae TaxID=1919254 RepID=A0A6N8WBR8_9CHLR)

HSP 1 Score: 124 bits (311), Expect = 1.010e-31
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 IGLLATVGVAEVAIIPRPRVGIMSTGNELVEPGENISGGFIRDSNRSTLLAAVESMGGLSVDLGIVKDKQTSLRDAVMAGLEQCDVLVTSGGVSMGEADLLKSILE 318
            IGLLAT G+ +  + PRP+V ++STG+ELVEPGE +  G IRDSNR+ LLAA+ + GG  VDLGI  D Q +L   V  GLEQ D+L+TSGGVSMG+ DL+K +LE
Sbjct:  165 IGLLATAGIVDAPVFPRPKVAVLSTGDELVEPGETLGPGQIRDSNRAMLLAAIRAAGGEPVDLGISGDTQEALEARVRQGLEQADILLTSGGVSMGDLDLVKPLLE 270
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BLAST of mRNA_H-elongata_contig83162.15953.1 vs. uniprot
Match: A0A540VJA6_9CHLR (Molybdopterin molybdenumtransferase n=1 Tax=Litorilinea aerophila TaxID=1204385 RepID=A0A540VJA6_9CHLR)

HSP 1 Score: 122 bits (305), Expect = 8.270e-31
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 IGLLATVGVAEVAIIPRPRVGIMSTGNELVEPGENISGGFIRDSNRSTLLAAVESMGGLSVDLGIVKDKQTSLRDAVMAGLEQCDVLVTSGGVSMGEADLLKSILE 318
            +GLLAT GV +V + PRPRV ++STG+ELVEP + +  G IRDSNR+ LLAAV + GG+ VDLGI  D Q +L   V  GL + D+L++SGGVSMGE DL+K +LE
Sbjct:  167 VGLLATAGVTQVPVYPRPRVAVLSTGDELVEPDQPLGPGQIRDSNRAMLLAAVAANGGIPVDLGIAGDSQEALEAGVQRGLAEADILLSSGGVSMGELDLIKPLLE 272
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BLAST of mRNA_H-elongata_contig83162.15953.1 vs. uniprot
Match: A0A6B1G648_9CHLR (Molybdopterin molybdenumtransferase n=2 Tax=unclassified Caldilineaceae TaxID=1919254 RepID=A0A6B1G648_9CHLR)

HSP 1 Score: 120 bits (302), Expect = 2.050e-30
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    1 IGLLATVGVAEVAIIPRPRVGIMSTGNELVEPGENISGGFIRDSNRSTLLAAVESMGGLSVDLGIVKDKQTSLRDAVMAGLEQCDVLVTSGGVSMGEADLLKSILE 318
            IGLLAT G+ +V + PRP+V ++STG+EL+EPGE++  G IRDSNR+ LLAA+ + GG  VDLGI  D Q +L   V  GL + D+L+TSGGVSMG+ DL+K +LE
Sbjct:  165 IGLLATAGIIDVPVFPRPKVAVLSTGDELIEPGESLGPGQIRDSNRAMLLAAIHAAGGEPVDLGISGDTQEALELRVHRGLTEADILLTSGGVSMGDLDLVKPLLE 270
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BLAST of mRNA_H-elongata_contig83162.15953.1 vs. uniprot
Match: A0A3A0AC54_9CHLR (Molybdopterin molybdenumtransferase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0AC54_9CHLR)

HSP 1 Score: 120 bits (302), Expect = 2.160e-30
Identity = 61/106 (57.55%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    1 IGLLATVGVAEVAIIPRPRVGIMSTGNELVEPGENISGGFIRDSNRSTLLAAVESMGGLSVDLGIVKDKQTSLRDAVMAGLEQCDVLVTSGGVSMGEADLLKSILE 318
            IGLLATVG A V + PRPRV ++STG+ELVEP +    G IRDSNR+TL+AAV + GG+ VDLGI +D+Q  L + +  GL   D+L+T+GGVSMG+ DL+K +LE
Sbjct:  165 IGLLATVGAATVPVYPRPRVAVLSTGDELVEPHQTPGPGQIRDSNRATLMAAVVAAGGVPVDLGIGRDEQDQLAERIQCGLTSADMLLTTGGVSMGDLDLVKPLLE 270
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BLAST of mRNA_H-elongata_contig83162.15953.1 vs. uniprot
Match: R7TMH7_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TMH7_CAPTE)

HSP 1 Score: 122 bits (306), Expect = 3.020e-30
Identity = 63/105 (60.00%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:    1 IGLLATVGVAEVAIIPRPRVGIMSTGNELVEPGENISGGFIRDSNRSTLLAAVESMGGLSVDLGIVKDKQTSLRDAVMAGLEQCDVLVTSGGVSMGEADLLKSIL 315
            IGLLATVGV +V    +P VG+MSTGNELVEPG+ +S G IRDSNRSTLLA +   G  +VDLGI +D   +L   ++  L+Q DV+VTSGGVSMGE DL+K +L
Sbjct:  384 IGLLATVGVTQVLCYTKPTVGVMSTGNELVEPGQKLSRGKIRDSNRSTLLACLREQGIPTVDLGIARDNADALLSQILEALDQVDVIVTSGGVSMGEKDLVKDVL 488
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83162.15953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBK7_ECTSI2.640e-4681.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7N4_9PHAE3.570e-4681.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YS15_9STRA1.530e-3566.04MoeA N-terminal region-domain-containing protein n... [more]
A0A3L7X231_9CHLR7.790e-3258.49Molybdopterin molybdenumtransferase n=1 Tax=Chloro... [more]
A0A3M1FS57_9CHLR8.200e-3260.38Molybdopterin molybdenumtransferase (Fragment) n=1... [more]
A0A6N8WBR8_9CHLR1.010e-3158.49Molybdopterin molybdenumtransferase n=3 Tax=unclas... [more]
A0A540VJA6_9CHLR8.270e-3157.55Molybdopterin molybdenumtransferase n=1 Tax=Litori... [more]
A0A6B1G648_9CHLR2.050e-3056.60Molybdopterin molybdenumtransferase n=2 Tax=unclas... [more]
A0A3A0AC54_9CHLR2.160e-3057.55Molybdopterin molybdenumtransferase n=1 Tax=Chloro... [more]
R7TMH7_CAPTE3.020e-3060.00Uncharacterized protein n=1 Tax=Capitella teleta T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83162contigH-elongata_contig83162:1720..2482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue3.3e-39
Seed eggNOG ortholog2880.D8LBK7
Preferred nameCNX1E
KEGG rclassRC00002,RC03462
KEGG koko:K03750,ko:K13168,ko:K15376
KEGG ReactionR09726,R09735
KEGG Pathwayko00790,ko01100,ko04727,map00790,map01100,map04727
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006464,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008940,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0016491,GO:0016661,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0018315,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0023052,GO:0030151,GO:0032324,GO:0032870,GO:0034641,GO:0036211,GO:0042040,GO:0042221,GO:0042278,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051716,GO:0055086,GO:0055114,GO:0061598,GO:0061599,GO:0065007,GO:0070566,GO:0070887,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657
EggNOG free text desc.molybdopterin molybdotransferase activity
EggNOG OGsCOG0303@1,KOG2371@2759
Ec32 ortholog descriptionmolybdopterin hydrolase / adenylyltransferase
Ec32 orthologEc-27_003590.2
EC2.10.1.1,2.7.7.75
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931238.7741292-CDS-H-elongata_contig83162:1719..18561622931238.7741292-CDS-H-elongata_contig83162:1719..1856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83162 1720..1856 +
1691679755.0252016-CDS-H-elongata_contig83162:1719..18561691679755.0252016-CDS-H-elongata_contig83162:1719..1856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83162 1720..1856 +
1622931238.7869456-CDS-H-elongata_contig83162:2301..24821622931238.7869456-CDS-H-elongata_contig83162:2301..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83162 2302..2482 +
1691679755.0390036-CDS-H-elongata_contig83162:2301..24821691679755.0390036-CDS-H-elongata_contig83162:2301..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83162 2302..2482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83162.15953.1prot_H-elongata_contig83162.15953.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83162 1720..2482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83162.15953.1

>prot_H-elongata_contig83162.15953.1 ID=prot_H-elongata_contig83162.15953.1|Name=mRNA_H-elongata_contig83162.15953.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
IGLLATVGVAEVAIIPRPRVGIMSTGNELVEPGENISGGFIRDSNRSTLL
AAVESMGGLSVDLGIVKDKQTSLRDAVMAGLEQCDVLVTSGGVSMGEADL
LKSILE
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mRNA from alignment at H-elongata_contig83162:1720..2482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83162.15953.1 ID=mRNA_H-elongata_contig83162.15953.1|Name=mRNA_H-elongata_contig83162.15953.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=763bp|location=Sequence derived from alignment at H-elongata_contig83162:1720..2482+ (Himanthalia elongata Himel1 dioecious)
ATTGGCCTGTTGGCCACCGTTGGAGTGGCGGAGGTGGCGATCATCCCCCG
GCCCAGGGTGGGGATCATGTCCACCGGGAACGAGCTGGTCGAACCGGGAG
AAAACATATCAGGAGGTTTCATCCGCGATAGTAACAGGTACTCGCGGGGC
GCGAGGCGGGAGGTAGAGGACTTGCAAGACATGCAGTAGTATTAGTAGGT
GTTTTTTTACCGTATTGTGGTATATGGTATATGGTACTGTAGGTTGCTGT
ATTGTGGGGCCTGGCTTTCGGCAGTTGCTGAGATTGCTGGTGCGCGCTCG
TACGGTGCTGGACGCGCGCCGTCCTTTCCCCCGTGTCTGTTCGCGTTGAT
GGGGTGCGGCGGCGCGTGAGCGGCCTACTACGGCTCAAGGTTGGCAAAAA
CTGTGCCGAGGTTTGATCTCGGGAACATGTGGACCGTCGAGTTCGTCGCG
CGCAAGCAAGATTGTCAAACGGCGCTTTGTCACCCCTATTTCGTACCCAC
CGATGCCTAGAGACCAAGCACCATTGGTTCTCTGCTCGCATCCCTCCACA
TCCGTGTCACATGTCTGCCCTGTTTTGCCCAGATCCACCTTGCTCGCCGC
GGTGGAATCGATGGGAGGCTTATCTGTCGACCTCGGTATAGTGAAGGACA
AGCAGACGTCTCTCAGGGATGCCGTGATGGCAGGGTTAGAGCAGTGCGAT
GTGCTGGTGACGTCCGGGGGGGTTTCGATGGGAGAAGCCGACTTGCTCAA
GTCCATTCTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig83162:1720..2482+

>mRNA_H-elongata_contig83162.15953.1 ID=mRNA_H-elongata_contig83162.15953.1|Name=mRNA_H-elongata_contig83162.15953.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig83162:1720..2482+ (Himanthalia elongata Himel1 dioecious)
ATTGGCCTGTTGGCCACCGTTGGAGTGGCGGAGGTGGCGATCATCCCCCG
GCCCAGGGTGGGGATCATGTCCACCGGGAACGAGCTGGTCGAACCGGGAG
AAAACATATCAGGAGGTTTCATCCGCGATAGTAACAGATTGGCCTGTTGG
CCACCGTTGGAGTGGCGGAGGTGGCGATCATCCCCCGGCCCAGGGTGGGG
ATCATGTCCACCGGGAACGAGCTGGTCGAACCGGGAGAAAACATATCAGG
AGGTTTCATCCGCGATAGTAACAGATCCACCTTGCTCGCCGCGGTGGAAT
CGATGGGAGGCTTATCTGTCGACCTCGGTATAGTGAAGGACAAGCAGACG
TCTCTCAGGGATGCCGTGATGGCAGGGTTAGAGCAGTGCGATGTGCTGGT
GACGTCCGGGGGGGTTTCGATGGGAGAAGCCGACTTGCTCAAGTCCATTC
TGGAGATCCACCTTGCTCGCCGCGGTGGAATCGATGGGAGGCTTATCTGT
CGACCTCGGTATAGTGAAGGACAAGCAGACGTCTCTCAGGGATGCCGTGA
TGGCAGGGTTAGAGCAGTGCGATGTGCTGGTGACGTCCGGGGGGGTTTCG
ATGGGAGAAGCCGACTTGCTCAAGTCCATTCTGGAG
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