mRNA_H-elongata_contig83.15936.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83.15936.1
Unique NamemRNA_H-elongata_contig83.15936.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig83.15936.1 vs. uniprot
Match: UPI000B423A88 (uncharacterized protein LOC8072119 n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B423A88)

HSP 1 Score: 97.8 bits (242), Expect = 2.630e-18
Identity = 92/365 (25.21%), Postives = 164/365 (44.93%), Query Frame = 1
Query:   16 CRAHSIDLSIEDICDMPWAKATIAAVKKCSKFIKHHQKTLAVYKTKSAGRGSLLPNDTRFGTASTMCERFKAVSKTLYIVPFGEWYEYVTSKSTKKALRATGDEVKRFILDSDNSEGSAWFEITFFLKVVEPLFQLVRIADG-TKSQAAQLFYRLHNVLDDLKEDLRTDPDLAGIKERLEPLEDALDKRRE-YMHSPMYGAAFCLAPEYYRKDAAMIDLGQSLMNLRTMKERLLINHGSDSRVAILAARDEDKGEPVGNVMIQYAKYKSGNFPGAIFLE-KTKSLTGAEWWNTLGKAGLPELGQVAGRVLYMVPAAAGCERNWSLMGSVSEENHARMNSNTMSNLVYVRANLQLMYRKS-MKSKK 1098
            C AH+I+L ++ I ++P  K  +   K  + F+  H +TL   +  + GR  + P  TRF +     E  +     L  +     ++ +    +KK   AT       IL+ +      W ++   L V EPLF+++R+ DG  K     ++  L      +KE          ++ R + +   ++K+    + SP++ AA+ L P Y   D ++ D+ +             I  G  S V      DE+  E   NV +Q  + + G F   +    +      A WW   G    P L ++A R+L +  +++GCERNWS   +V  +   R+  + +S LVY++ N +L+ +++ +KSKK
Sbjct:  378 CAAHTINLMLQGIGNIPRFKKVVDQAKAFTIFVYGHTRTLECMRYFTEGREIVRPGVTRFASNFLTLESIQEKKDQLRKMVVHSRWDSLKDVKSKKGKNATAT-----ILNPN-----FWKDVKLTLAVFEPLFKVLRLVDGDVKPSMGFVYGELLKAKRQIKEAF------GNVESRFKDVIAIVEKKMAGRLDSPLHLAAYLLNPHYSYADPSIFDVPK-------------ITVGFISCVDTFYYHDEEMQEQAANVELQKFQNREGPFNKKLARTFENFEYNPASWWRLYGTE-TPALQKMATRILSLTSSSSGCERNWSGFDAVHTKRRNRLTVDRISKLVYIQFNNRLLNKRAKIKSKK 712          
BLAST of mRNA_H-elongata_contig83.15936.1 vs. uniprot
Match: UPI000904AAD1 (uncharacterized protein LOC109230180 n=2 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904AAD1)

HSP 1 Score: 96.7 bits (239), Expect = 6.220e-18
Identity = 91/355 (25.63%), Postives = 157/355 (44.23%), Query Frame = 1
Query:   16 CRAHSIDLSIEDICDMPWAKATIAAVKKCSKFIKHHQKTLAVYKTKSAGRGSLLPNDTRFGTASTMCERFKAVSKTLYIVPFGEWYEYVTSKSTKKALRATGDEVKRFILDSDNSEGSAWFEITFFLKVVEPLFQLVRIADGTKSQAAQLFYRLHNVLDDLKEDLRTDPDLAGIKERLEPLEDALDKRRE-YMHSPMYGAAFCLAPEYYRKDAAMIDLGQSLMNLRTMKERLLINHGSDSRVAILAARDEDKGEPVGNVMIQYAKYKSGNFPGAIFLEKTKSLTGAEWWNTLGKAGLPELGQVAGRVLYMVPAAAGCERNWSLMGSVSEENHARMNSNTMSNLVYVRANLQLMYR 1077
            C AH IDL +EDI  +P    T+        FI  H   + + +  +  +  +    TRF T+    +R       L  +   E   +V SK +KK     G      IL       + W ++ + LK++ PLF+++R+ D  K  A    Y     +D  KE +       G   + + + + +D+R E  +H P++ A   L PEY+ +D A+ +  +    L    ++L         V  +  +D+   E     +  Y + + G F   +      + + AEWWN  G +  P L ++A R+L +  ++AGCERNWS+   +  +   R+    +++LVYV+ N  L  R
Sbjct:  326 CAAHCIDLILEDIGKLPTITRTLKRAIAVVGFIYGHTGVINMMRDFTKKKELVKCGITRFATSFLTLQRLYNQKTNLRTMITSE--RWVNSKWSKKPQ---GKVTTHTILMP-----AFWNQVVYILKIIGPLFKVLRLVDNEKKPAMGYTYE---AMDRAKEAIAKS--FEGKSAKYKDVFEIIDQRWECQLHQPLHAAGHYLNPEYFYQDPAIENCREVTNGLYACIQKL---------VPSIEVQDKIVSE-----LPLYTRAE-GQFGLPMAKRSRATRSPAEWWNLYGNSA-PHLQKLAIRILSLTASSAGCERNWSVFEHIHSKKRNRLEHKRLNDLVYVKYNRALRTR 649          
BLAST of mRNA_H-elongata_contig83.15936.1 vs. uniprot
Match: A0A811QXC9_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811QXC9_9POAL)

HSP 1 Score: 94.7 bits (234), Expect = 2.500e-17
Identity = 91/366 (24.86%), Postives = 164/366 (44.81%), Query Frame = 1
Query:   16 CRAHSIDLSIEDICDMPWAKATIAAVKKCSKFIKHHQKTLAVYKTKSAGRGSLLPNDTRFGTASTMCERFKAVSKTLYIVPFGEWYEYVTSKSTKKALRATGDEVKRFILDSDNSEGSAWFEITFFLKVVEPLFQLVRIADGTKSQAAQLFYRLHNVLDDLKEDLRTDPDLAGIKERLEPLEDALDKRRE-YMHSPMYGAAFCLAPEYYRKDAAMIDLGQSLMNLRTMKERLLINHGSDSRVAILAARDEDKGEPVGNVMIQYAKYKSGNFPGAIFLEKTKS---LTGAEWWNTLGKAGLPELGQVAGRVLYMVPAAAGCERNWSLMGSVSEENHARMNSNTMSNLVYVRANLQLMYRKS-MKSKK 1098
            C AH+I+L ++ I ++P  K  +   K  + F+  H +TL   +  + GR  + P  TRF +     E  +     L  +     ++ +    ++K   AT          +  S  + W ++   L V EPLF+++R+ DG    +    Y      + LK   +    L  ++ R + + D ++K+    + SP++  A+ L P Y   D ++ D+ +             I  G  S V      DE+  E   NV +Q  K++S   P +  L +T        A WW   G    P L ++A R+L +  +++GCERNW     V  +   R+  + ++ LVY++ N +L+ +++ +KSKK
Sbjct:  272 CAAHTINLMLQGIGNIPRFKKLVDQAKAFTIFVYGHTRTLECMRYFTEGREIVRPGVTRFASNFLTLESIQEKKDQLRKMVVHSRWDSLKDVKSQKGKNAT----------ATISNPNFWKDVKLTLAVFEPLFKVLRLVDGDVKPSMGFVYG-----ELLKAKRKIKEALCNVESRFKDVIDIVEKKMAGRLDSPLHLTAYLLNPHYSYADPSIFDVPK-------------ITEGFISCVETFYYHDEEMQEQAANVELQ--KFQSREGPLSKKLARTFENFDYNLASWWRLYGTE-TPALQKMATRILSLTASSSGCERNW-----VHTKKRNRLTVDRLNKLVYIQFNNRLLNKRAKIKSKK 601          
BLAST of mRNA_H-elongata_contig83.15936.1 vs. uniprot
Match: UPI0019D64DD1 (uncharacterized protein LOC120653517 n=4 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D64DD1)

HSP 1 Score: 91.3 bits (225), Expect = 3.680e-16
Identity = 96/368 (26.09%), Postives = 165/368 (44.84%), Query Frame = 1
Query:   16 CRAHSIDLSIEDICDMPWAKATIAAVKKCSKFIKHHQKTLAVYKTKSAGRGSLLPNDTRFG----TASTMCERFKAVSKTLYIVPFGEWYEYVTSKSTKKALRATGDEVKRFILDSDNSEGSAWFEITFFLKVVEPLFQLVRIADG-TKSQAAQLFYRLHNVLDDLKEDLRTDPDLAGIKERLEPLEDALDKRREYMHSPMYGAAFCLAPEYYRKDAAMIDLGQSLMNLRTMKERLLINHGSDSRVAILAARDEDKGEPVGNVMIQYAKYKSGNFPGAIFLE-KTKSLTGAEWWNTLGKAGLPELGQVAGRVLYMVPAAAGCERNWSLMGSVSEENHARMNSNTMSNLVYVRANLQLMY-RKSMKSKK 1098
            C AH+I+L ++ I +MP  K  I   K  + F+  H +TL   +  + G+  +    TRF     T ++M E+   + K   +V    W      KS KK   AT       IL       + W E+   L V EPLF+++R+ADG  K+    ++  L     ++KE    +      K+ L  +E  +  R   + SP++  A+ L P Y   + ++ D  +             +N    + V      DEDK +   N+ ++  + + G F   +    +      A WW   G +  P L ++A R+L +  +A+GCERNWS    +  +   R+ +  +  LVY++ N +L+  R+ +K+KK
Sbjct:  334 CVAHTINLMLQGIGNMPRFKKVIDQAKAFTIFVYGHTRTLDCLRYFTEGKEVVRAGVTRFASNFLTLNSMLEKKDQLRK---MVVHTRWDSLKDVKS-KKGKYATAT-----ILSP-----TFWKEVKLILAVFEPLFKVLRLADGDVKASMGFIYGELLKAKREIKEVFGNNE--TRFKDVLAVIEKKMKGR---LDSPLHLTAYLLNPHYSFTNPSIFDEPK-------------MNEAFIACVEQFYYHDEDKQDQAANIELKKFQNREGAFSKKLARTFENFDYNPASWWRLYG-SHTPALQKMATRILSLTSSASGCERNWSGFEGIHTKKRNRLTTARLEKLVYIQFNNRLLSKREKIKTKK 668          
BLAST of mRNA_H-elongata_contig83.15936.1 vs. uniprot
Match: UPI001929B702 (uncharacterized protein LOC120267759 isoform X1 n=2 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929B702)

HSP 1 Score: 90.5 bits (223), Expect = 4.450e-16
Identity = 86/361 (23.82%), Postives = 151/361 (41.83%), Query Frame = 1
Query:   16 CRAHSIDLSIEDICDMPWAKATIAAVKKCSKFIKHHQKTLAVYKTKSAGRGSLLPNDTRFGTASTMCERFKAVSKTLYIVPFGEWYEYVTSKSTKKALRAT-GDEVKRFILDSDNSEGSAWFEITFFLKVVEPLFQLVRIADGTKSQAAQLFYR-LHNVLDDLKEDLRTDPDLAGIKERLEPLEDALDKR-REYMHSPMYGAAFCLAPEYYRKDAAMIDLGQSLMNLRTMKERLLINHGSDSRVAILAARDEDKGEPVGNVMIQYAKYKSGNFPGAIFLEKTKSLTGAEWWNTLGKAGLPELGQVAGRVLYMVPAAAGCERNWSLMGSVSEENHARMNSNTMSNLVYVRANLQLMYRKSMK 1089
            C AHSI+L ++DI +MP   +      K + F+ +H+  L   +T+      + P  TRF T     +        L  +        V S   KK L    G EVK+ +LD +      W      +K++ PL +L+RI D  +  A    Y  ++     +KE  +      G K   +P    + +R    + + ++  A+ L P +   +  +    +    +  + E+  +   SD    +   R+  K                  F   + L  +K+ T  EWW   G   +P L ++A R+L    +++GCERNWS+   +  +   R+    +++LVYV  NL+L +R + K
Sbjct:   88 CAAHSINLIMKDIAEMPTVHSLAILASKITVFVYNHKWVLNWLRTQPKWTEIIRPGATRFATTFIALKSLHDHKDYLQSL--------VVSSDFKKFLNVPKGREVKQIVLDEN-----FWRNCLIMVKIMGPLIRLLRICDSDEKPAMGYVYDGIYRARKGIKELFK------GKKHLYKPYTSIIKERWHRTLRTGIHVLAYWLNPAFQFHEHNLCQKLEVQRGILDVIEQQTLFKASDLMEEMKIFRERQK-----------------TFARPLALSTSKTTTPDEWWKFFG-CDVPNLQKLAIRILSQTASSSGCERNWSVFERIHTKKRNRLEHQRLNDLVYVHYNLRLQHRLASK 411          
BLAST of mRNA_H-elongata_contig83.15936.1 vs. uniprot
Match: UPI0019D54C27 (uncharacterized protein LOC120662312 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D54C27)

HSP 1 Score: 89.0 bits (219), Expect = 1.360e-15
Identity = 93/368 (25.27%), Postives = 161/368 (43.75%), Query Frame = 1
Query:   16 CRAHSIDLSIEDICDMPWAKATIAAVKKCSKFIKHHQKTLAVYKTKSAGRGSLLPNDTRFG----TASTMCERFKAVSKTLYIVPFGEWYEYVTSKSTKKALRATGDEVKRFILDSDNSEGSAWFEITFFLKVVEPLFQLVRIADG-TKSQAAQLFYRLHNVLDDLKEDLRTDPDLAGIKERLEPLEDALDKRREYMHSPMYGAAFCLAPEYYRKDAAMIDLGQSLMNLRTMKERLLINHGSDSRVAILAARDEDKGEPVGNVMIQYAKYKSGNFPGAIFLE-KTKSLTGAEWWNTLGKAGLPELGQVAGRVLYMVPAAAGCERNWSLMGSVSEENHARMNSNTMSNLVYVRANLQLMY-RKSMKSKK 1098
            C AH+I+L ++ I ++P  K  I  VK  + F+  H +TL   +  + G+  +    TRF     T ++M E+   + K   +V    W      KS KK   AT   +              W E+   L V E LF+++R+ADG  K     ++  L     ++KE    +      K+ L  +E  +  R   + SP++  A+ L P Y   +  + D  +             +N    + V      DEDK +   N+ ++  + + G F   +    +      A WW   G +  P L ++A R+L +  +A+GCERNWS    +  +   R+ +  +  LVY++ N +L+  R+ +K+KK
Sbjct:   57 CAAHTINLMLQGISNLPRFKKVIDQVKAFTIFVYGHTRTLDCLRYFTEGKEVVRAGVTRFASNFLTLNSMLEKKDQLRK---MVVHTRWDSLKDVKS-KKGKDATATILSPIF----------WKEVKLILAVFESLFKVLRLADGDVKPSMGFIYGELLKAKREIKEVFGNNE--TRFKDVLAVIEKKMKGR---LDSPLHLTAYLLNPHYSFTNPLIFDEPK-------------MNEAFIACVEQFYYHDEDKQDQAANIELKQFQNREGAFSKKLARTFQNFDYNPASWWRLYG-SHTPALQKMATRILSLTSSASGCERNWSGFEGIHTKKRNRLTTARLEKLVYIQFNNRLLSKREKIKTKK 391          
BLAST of mRNA_H-elongata_contig83.15936.1 vs. uniprot
Match: UPI000B42457D (uncharacterized protein LOC8059968 n=3 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B42457D)

HSP 1 Score: 89.4 bits (220), Expect = 1.720e-15
Identity = 96/370 (25.95%), Postives = 164/370 (44.32%), Query Frame = 1
Query:   16 CRAHSIDLSIEDICDMPWAKATIAAVKKCSKFIKHHQKTLAVYKTKSAGRGSLLPNDTRFG----TASTMCERFKAVSKTLYIVPFGEWYEYVTSKSTKKALRATGDEVKRFILDSDNSEGSAWFEITFFLKVVEPLFQLVRIADGTKSQAAQLFY-RLHNVLDDLKEDLRTDPDLAGIKERLEPLEDALDKRREYMHSPMYGAAFCLAPEYYRKDAAMIDLGQSLMNLRTMKERLLINHGSDSRVAILAARDEDKGEPVGNVMIQYAKYKSGNFPGAI---FLEKTKSLTGAEWWNTLGKAGLPELGQVAGRVLYMVPAAAGCERNWSLMGSVSEENHARMNSNTMSNLVYVRANLQLMY-RKSMKSKK 1098
            C AH+I+L ++ I +MP  K  +   K  + F   H +TL   +  + G+  + P  TRF     T ++M E+   + K   +V   +W      KS KK   AT       IL       S W ++   L V EPL +++R+ DG    +    Y  L      +K+   T    A  K+ +  +E  +++R   + SP++  A+ L P Y   D ++ D  +             I+ G    V      DED      N+ ++  + + G F   +   F     +   A WW   G    P L ++A R+L +  +++GCERNWS   ++  +   R+ +  ++ LVY++ N +L+  R+ +KSKK
Sbjct:  472 CAAHTINLMLQGIGNMPRFKKVVDQAKAFTIFAYGHTRTLECLRCFTEGKEVVRPRVTRFASNFLTLASMQEKKDQLRK---MVVHSKWDTLKDVKS-KKEKEATAT-----ILSP-----SFWRDVKLTLAVFEPLVKVLRLVDGDVRPSLGFVYGELLKAKKQIKDAFGTVE--ARFKDVIAVVEKKMNER---LDSPLHLTAYLLNPHYSYSDPSIFDQPK-------------ISEGFIVCVEKFYYHDEDMQHQAANIELKKFQNREGPFSKKLARTFENFDYNPGRASWWRLYGYE-TPALQKMATRILSLTSSSSGCERNWSGFEAIHTKKRNRLTTARLNKLVYIQFNSKLLSKREKIKSKK 808          
BLAST of mRNA_H-elongata_contig83.15936.1 vs. uniprot
Match: UPI0019D6A35F (uncharacterized protein LOC120645455 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D6A35F)

HSP 1 Score: 89.0 bits (219), Expect = 1.810e-15
Identity = 91/370 (24.59%), Postives = 160/370 (43.24%), Query Frame = 1
Query:   16 CRAHSIDLSIEDICDMPWAKATIAAVKKCSKFIKHHQKTLAVYKTKSAGRGSLLPNDTRFG----TASTMCERFKAVSKTLYIVPFGEWYEYVTSKSTKKALRATGDEVKRFILDSDNSEGSAWFEITFFLKVVEPLFQLVRIADGTKSQAAQLFYRLHNVLDDLKEDLRTDPDLAGIKERLEPLEDALDKRRE-YMHSPMYGAAFCLAPEYYRKDAAMIDLGQSLMNLRTMKERLLINHGSDSRVAILAARDEDKGEPVGNVMIQYAKYKSGNFPGAI---FLEKTKSLTGAEWWNTLGKAGLPELGQVAGRVLYMVPAAAGCERNWSLMGSVSEENHARMNSNTMSNLVYVRANLQLMY-RKSMKSKK 1098
            C AH+I+L ++ I ++P  K  I  VK    F+  H +TL   +  + GR  + P   RF     T +++ E+   + K   +V    W      KS KK   AT       IL       + W ++   L V EPL +++R+ DG    +    Y      + LK           ++ R + +   ++K+ +  + SP++  A+ L P Y     ++ D  + +       E+   +             DEDK +   N+ ++  + + G F   +   F     +   A WW   G    P L  +A R+L +  +++GCERNWS    +  +   R+ +  ++ LVY++ N +LM  R+ +KSKK
Sbjct:  255 CAAHTINLMLQGIGNLPRFKKVIDQVKAYIIFVYGHTRTLECLRYFTEGRELVRPGVNRFASYFLTLNSIQEKKDQLRK---MVVHSRWDSLKDVKS-KKVKEATAT-----ILSP-----TFWKDVKLTLSVFEPLVKVLRLVDGDVKPSMGFVYG-----EQLKAKREIKEAFGNVETRFKDVMAVIEKKMDGRLDSPLHLTAYLLNPHYSYSKPSIFDEPKIIEAFVACVEQFYYH-------------DEDKQDQAANIELKKFQSREGPFNKKLATTFQNFDYNPGRASWWRLYGTE-TPALQSMATRILSLTSSSSGCERNWSWFEGIHTKKRNRLTTIRLNKLVYIQFNNRLMNKREKIKSKK 591          
BLAST of mRNA_H-elongata_contig83.15936.1 vs. uniprot
Match: UPI0019D5814B (uncharacterized protein LOC120690019 isoform X2 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5814B)

HSP 1 Score: 87.0 bits (214), Expect = 7.150e-15
Identity = 90/365 (24.66%), Postives = 155/365 (42.47%), Query Frame = 1
Query:   16 CRAHSIDLSIEDICDMPWAKATIAAVKKCSKFIKHHQKTLAVYKTKSAGRGSLLPNDTRFGTASTMCERFKAVSKTLYIVPFGEWYEYVTSKSTKKALRATGDEVKRFILDSDNSEGSAWFEITFFLKVVEPLFQLVRIADG-TKSQAAQLFYRLHNVLDDLKEDLRTDPDLAGIKERLEPLEDALDKRRE-YMHSPMYGAAFCLAPEYYRKDAAMIDLGQSLMNLRTMKERLLINHGSDSRVAILAARDEDKGEPVGNVMIQYAKYKSGNFPGAIFLE-KTKSLTGAEWWNTLGKAGLPELGQVAGRVLYMVPAAAGCERNWSLMGSVSEENHARMNSNTMSNLVYVRANLQLMY-RKSMKSKK 1098
            C AH+I+L ++ I ++P  K  I   K  + F+  H +TL   +  + G+  + P  TRF +        +   +   +V    W      KS K      G E    IL     +     ++   L V EPL +++R+ DG  K     L+  L     ++KE          ++ R + +   ++K+    + SP++  AF L P Y   + ++ D  +             +N    S V      DED+ E   N  ++  + + G F   +    +      A WW   G    P L ++A R+L +  +++GCERNWS       E   R+ +  ++ LVY++ N +LM  R+ +KSKK
Sbjct:  138 CAAHTINLMLQGIGNLPRFKKVIDQAKSFTIFVYGHTRTLESLRYFTEGKELVRPGVTRFASYFLTLNSMQEKDQLRKMVVHSRWDSLKDVKSKK------GKEATATILSPAFCK-----DVKLMLAVFEPLVKVLRLVDGDVKPSMGFLYGELLKAKREVKEAF------GNVESRFKDVMAVIEKKMNGRLDSPLHLTAFLLNPHYSYANPSIFDEPK-------------MNEAFISCVEQFYYHDEDQQEQAANFELKKFQNREGPFSKKLARAFQNYDYNPASWWRLYGTE-TPALQKMATRILSLTSSSSGCERNWS-----GFEGRNRLTTTRLNKLVYIQFNNRLMNKREKIKSKK 466          
BLAST of mRNA_H-elongata_contig83.15936.1 vs. uniprot
Match: UPI001652E070 (uncharacterized protein LOC110926009 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652E070)

HSP 1 Score: 84.3 bits (207), Expect = 2.300e-14
Identity = 89/383 (23.24%), Postives = 161/383 (42.04%), Query Frame = 1
Query:   16 CRAHSIDLSIEDICDMPWAKATIAAVKKCSKFIKHHQKTLAVYKTKSAGRGSLLPNDTRFGTASTMCE---RFKAVSKTLYIVPFGEWYEYVTSKSTKKALRATGDEVKRFILDSDNSEGSAWFEITFFLKVVEPLFQLVRIADGTKSQAAQLFYRLHNVLDDLKEDLRTDPDLAGIKERLEPLEDALDKRRE-YMHSPMYGAAFCLAPEYY------RKDAAMIDLGQSLMNLRTMKERLLINHGSDSRVAILAARDEDKGEPVGNVMIQYAKYKSGNFPGAIFLEKTKSLTGAEWWNTLGKAGLPELGQVAGRVLYMVPAAAGCERNWSLMGSVSEENHARMNSNTMSNLVYVRANLQLMYRKSMKSKKQHEEAGDVWEVD 1134
            C AH +DL +ED+  +P  K TI        +I +H   L + +  +  +       TRF T     +   R K+  +T++     +W E   +K  K   R   D V+ +           W  +TF LKV+ P+ +++R+ D  K  A    Y         +  +     L       + +   +DKR +  +H P++ A +   PE+Y       KD  + D       +    +RL+ +              +DK + +   M+++   + G F   I      ++  A+WWN  GK  +P + Q+A +VL +  +++GCERNWS    +  +   R+    + +LV+V       Y K++K+++  E   D   +D
Sbjct:   12 CAAHCLDLMLEDVGKIPKVKRTIEEGIFLVGYIYNHCGVLNMMREFTKNKELTRSGVTRFATTYLTLQSLHRQKSALRTMFTSD--KWKESKWAKQPKG--RQAKDVVQTYAF---------WTNVTFTLKVMGPIVRVLRLVDNEKKPAMDYLYEGME-----RAKITIAKALGENSVDYQVVSAIIDKRWDCQLHHPLHAAGYYFNPEFYYYRPEIEKDQEVTD------GMIKCVQRLVPS--------------KDKQDLIMKEMVKWVN-QEGRFALDIAKRAHCTIAPAQWWNLYGKE-VPNIQQLAMKVLSLTCSSSGCERNWSTFEQIHSKKRNRLEHKKLQDLVFVN------YNKTLKNRRDKEVVYDPISLD 348          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83.15936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000B423A882.630e-1825.21uncharacterized protein LOC8072119 n=1 Tax=Sorghum... [more]
UPI000904AAD16.220e-1825.63uncharacterized protein LOC109230180 n=2 Tax=Nicot... [more]
A0A811QXC9_9POAL2.500e-1724.86Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
UPI0019D64DD13.680e-1626.09uncharacterized protein LOC120653517 n=4 Tax=Panic... [more]
UPI001929B7024.450e-1623.82uncharacterized protein LOC120267759 isoform X1 n=... [more]
UPI0019D54C271.360e-1525.27uncharacterized protein LOC120662312 n=1 Tax=Panic... [more]
UPI000B42457D1.720e-1525.95uncharacterized protein LOC8059968 n=3 Tax=Sorghum... [more]
UPI0019D6A35F1.810e-1524.59uncharacterized protein LOC120645455 n=1 Tax=Panic... [more]
UPI0019D5814B7.150e-1524.66uncharacterized protein LOC120690019 isoform X2 n=... [more]
UPI001652E0702.300e-1423.24uncharacterized protein LOC110926009 n=1 Tax=Helia... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83contigH-elongata_contig83:671..2043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score122.5
Seed ortholog evalue4.5e-25
Seed eggNOG ortholog3750.XP_008361185.1
EggNOG free text desc.source UniProtKB
EggNOG OGs2C7QK@1,2QUNQ@2759,37QB2@33090,3GCE5@35493,4JRQZ@91835
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1182
Cds size1182
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931236.8759387-CDS-H-elongata_contig83:670..15821622931236.8759387-CDS-H-elongata_contig83:670..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83 671..1582 -
1691679754.245262-CDS-H-elongata_contig83:670..15821691679754.245262-CDS-H-elongata_contig83:670..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83 671..1582 -
1622931236.892853-CDS-H-elongata_contig83:1773..20431622931236.892853-CDS-H-elongata_contig83:1773..2043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83 1774..2043 -
1691679754.2551334-CDS-H-elongata_contig83:1773..20431691679754.2551334-CDS-H-elongata_contig83:1773..2043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83 1774..2043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83.15936.1prot_H-elongata_contig83.15936.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83 671..2043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83.15936.1

>prot_H-elongata_contig83.15936.1 ID=prot_H-elongata_contig83.15936.1|Name=mRNA_H-elongata_contig83.15936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=394bp
MTGLLCRAHSIDLSIEDICDMPWAKATIAAVKKCSKFIKHHQKTLAVYKT
KSAGRGSLLPNDTRFGTASTMCERFKAVSKTLYIVPFGEWYEYVTSKSTK
KALRATGDEVKRFILDSDNSEGSAWFEITFFLKVVEPLFQLVRIADGTKS
QAAQLFYRLHNVLDDLKEDLRTDPDLAGIKERLEPLEDALDKRREYMHSP
MYGAAFCLAPEYYRKDAAMIDLGQSLMNLRTMKERLLINHGSDSRVAILA
ARDEDKGEPVGNVMIQYAKYKSGNFPGAIFLEKTKSLTGAEWWNTLGKAG
LPELGQVAGRVLYMVPAAAGCERNWSLMGSVSEENHARMNSNTMSNLVYV
RANLQLMYRKSMKSKKQHEEAGDVWEVDEDLESDGESPSDMNDD
back to top

mRNA from alignment at H-elongata_contig83:671..2043-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83.15936.1 ID=mRNA_H-elongata_contig83.15936.1|Name=mRNA_H-elongata_contig83.15936.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1373bp|location=Sequence derived from alignment at H-elongata_contig83:671..2043- (Himanthalia elongata Himel1 dioecious)
ATGACCGGTCTCTTGTGTAGGGCACACAGCATCGATCTCTCGATCGAGGA CATCTGCGACATGCCCTGGGCAAAGGCGACTATAGCAGCAGTGAAAAAAT GCAGCAAGTTCATCAAGCACCACCAGAAGACGCTGGCGGTGTACAAGACC AAGAGCGCTGGCCGGGGTTCACTTCTTCCCAACGACACCCGGTTCGGCAC CGCTTCCACCATGTGCGAACGATTCAAGGCGGTGAGTAAAACCCTGTACA TTGTACCTTTTGGCGAGTGGGTGACAGATAATAGTTGGTAGTTGACAGTT TACAGTTTACAACTTGTTGTGGGCTGTAATGTACGGTTACGAGAACTTGA TGCAACTGCTCTTGAGTGATATGTACGCTTGTTGTTTTGTTCTGCTGTTT TTCTGTGACAAAGTGCAAGCATGCCCTCGTGAACACGGTGGCGGATGAGA CGTTCACGGAGTATGAATACGTGACCAGCAAGTCAACTAAGAAGGCACTC CGCGCAACTGGAGACGAGGTCAAGCGGTTCATCTTGGACAGTGACAACAG CGAAGGTAGCGCGTGGTTCGAGATCACTTTCTTCTTGAAGGTGGTAGAGC CGCTGTTTCAGCTTGTTCGTATCGCCGACGGCACCAAGTCCCAGGCGGCT CAGCTGTTCTACAGACTGCACAACGTCTTGGACGACTTGAAGGAGGACTT ACGGACCGACCCCGACCTCGCCGGAATCAAAGAGCGGCTCGAGCCGCTAG AGGACGCCTTGGACAAGCGCCGGGAGTACATGCACTCTCCGATGTACGGG GCTGCTTTCTGTCTGGCTCCGGAGTACTACCGTAAAGATGCAGCTATGAT CGACCTTGGGCAGTCGCTCATGAACCTGCGGACGATGAAGGAGAGGCTGT TGATCAATCACGGCAGCGACTCACGTGTGGCCATCCTGGCGGCGAGGGAT GAAGACAAGGGCGAGCCGGTCGGGAACGTCATGATTCAGTACGCGAAGTA CAAGTCGGGTAATTTCCCGGGTGCCATATTCCTCGAGAAAACCAAATCTC TGACGGGGGCTGAGTGGTGGAACACCCTCGGCAAGGCGGGTTTGCCGGAG CTGGGGCAAGTGGCGGGCCGTGTTCTATATATGGTGCCAGCTGCGGCCGG GTGTGAACGTAACTGGAGCCTGATGGGGTCGGTCTCGGAGGAGAACCACG CGCGCATGAACTCAAACACCATGTCCAACCTGGTCTACGTGCGTGCCAAC CTCCAGCTGATGTACCGCAAATCCATGAAGAGCAAGAAGCAGCACGAAGA GGCGGGAGACGTGTGGGAGGTCGACGAGGACCTGGAGAGCGATGGCGAGT CCCCAAGCGACATGAATGATGAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig83:671..2043-

>mRNA_H-elongata_contig83.15936.1 ID=mRNA_H-elongata_contig83.15936.1|Name=mRNA_H-elongata_contig83.15936.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2364bp|location=Sequence derived from alignment at H-elongata_contig83:671..2043- (Himanthalia elongata Himel1 dioecious)
ATGACCGGTCTCTTGTGTAGGGCACACAGCATCGATCTCTCGATCGAGGA
CATCTGCGACATGCCCTGGGCAAAGGCGACTATAGCAGCAGTGAAAAAAT
GCAGCAAGTTCATCAAGCACCACCAGAAGACGCTGGCGGTGTACAAGACC
AAGAGCGCTGGCCGGGGTTCACTTCTTCCCAACGACACCCGGTTCGGCAC
CGCTTCCACCATGTGCGAACGATTCAAGGCGGTGAGTAAAACCCTGTACA
TTGTACCTTTTGGCGAGTGGATGACCGGTCTCTTGTGTAGGGCACACAGC
ATCGATCTCTCGATCGAGGACATCTGCGACATGCCCTGGGCAAAGGCGAC
TATAGCAGCAGTGAAAAAATGCAGCAAGTTCATCAAGCACCACCAGAAGA
CGCTGGCGGTGTACAAGACCAAGAGCGCTGGCCGGGGTTCACTTCTTCCC
AACGACACCCGGTTCGGCACCGCTTCCACCATGTGCGAACGATTCAAGGC
GGTGAGTAAAACCCTGTACATTGTACCTTTTGGCGAGTGGTATGAATACG
TGACCAGCAAGTCAACTAAGAAGGCACTCCGCGCAACTGGAGACGAGGTC
AAGCGGTTCATCTTGGACAGTGACAACAGCGAAGGTAGCGCGTGGTTCGA
GATCACTTTCTTCTTGAAGGTGGTAGAGCCGCTGTTTCAGCTTGTTCGTA
TCGCCGACGGCACCAAGTCCCAGGCGGCTCAGCTGTTCTACAGACTGCAC
AACGTCTTGGACGACTTGAAGGAGGACTTACGGACCGACCCCGACCTCGC
CGGAATCAAAGAGCGGCTCGAGCCGCTAGAGGACGCCTTGGACAAGCGCC
GGGAGTACATGCACTCTCCGATGTACGGGGCTGCTTTCTGTCTGGCTCCG
GAGTACTACCGTAAAGATGCAGCTATGATCGACCTTGGGCAGTCGCTCAT
GAACCTGCGGACGATGAAGGAGAGGCTGTTGATCAATCACGGCAGCGACT
CACGTGTGGCCATCCTGGCGGCGAGGGATGAAGACAAGGGCGAGCCGGTC
GGGAACGTCATGATTCAGTACGCGAAGTACAAGTCGGGTAATTTCCCGGG
TGCCATATTCCTCGAGAAAACCAAATCTCTGACGGGGGCTGAGTGGTGGA
ACACCCTCGGCAAGGCGGGTTTGCCGGAGCTGGGGCAAGTGGCGGGCCGT
GTTCTATATATGGTGCCAGCTGCGGCCGGGTGTGAACGTAACTGGAGCCT
GATGGGGTCGGTCTCGGAGGAGAACCACGCGCGCATGAACTCAAACACCA
TGTCCAACCTGGTCTACGTGCGTGCCAACCTCCAGCTGATGTACCGCAAA
TCCATGAAGAGCAAGAAGCAGCACGAAGAGGCGGGAGACGTGTGGGAGGT
CGACGAGGACCTGGAGAGCGATGGCGAGTCCCCAAGCGACATGAATGATG
ACTATGAATACGTGACCAGCAAGTCAACTAAGAAGGCACTCCGCGCAACT
GGAGACGAGGTCAAGCGGTTCATCTTGGACAGTGACAACAGCGAAGGTAG
CGCGTGGTTCGAGATCACTTTCTTCTTGAAGGTGGTAGAGCCGCTGTTTC
AGCTTGTTCGTATCGCCGACGGCACCAAGTCCCAGGCGGCTCAGCTGTTC
TACAGACTGCACAACGTCTTGGACGACTTGAAGGAGGACTTACGGACCGA
CCCCGACCTCGCCGGAATCAAAGAGCGGCTCGAGCCGCTAGAGGACGCCT
TGGACAAGCGCCGGGAGTACATGCACTCTCCGATGTACGGGGCTGCTTTC
TGTCTGGCTCCGGAGTACTACCGTAAAGATGCAGCTATGATCGACCTTGG
GCAGTCGCTCATGAACCTGCGGACGATGAAGGAGAGGCTGTTGATCAATC
ACGGCAGCGACTCACGTGTGGCCATCCTGGCGGCGAGGGATGAAGACAAG
GGCGAGCCGGTCGGGAACGTCATGATTCAGTACGCGAAGTACAAGTCGGG
TAATTTCCCGGGTGCCATATTCCTCGAGAAAACCAAATCTCTGACGGGGG
CTGAGTGGTGGAACACCCTCGGCAAGGCGGGTTTGCCGGAGCTGGGGCAA
GTGGCGGGCCGTGTTCTATATATGGTGCCAGCTGCGGCCGGGTGTGAACG
TAACTGGAGCCTGATGGGGTCGGTCTCGGAGGAGAACCACGCGCGCATGA
ACTCAAACACCATGTCCAACCTGGTCTACGTGCGTGCCAACCTCCAGCTG
ATGTACCGCAAATCCATGAAGAGCAAGAAGCAGCACGAAGAGGCGGGAGA
CGTGTGGGAGGTCGACGAGGACCTGGAGAGCGATGGCGAGTCCCCAAGCG
ACATGAATGATGAC
back to top