mRNA_H-elongata_contig82413.15896.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82413.15896.1
Unique NamemRNA_H-elongata_contig82413.15896.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82413.15896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82413contigH-elongata_contig82413:429..752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size326
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931230.723584-UTR-H-elongata_contig82413:428..4431622931230.723584-UTR-H-elongata_contig82413:428..443Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82413 429..443 +
1691679751.718459-UTR-H-elongata_contig82413:428..4431691679751.718459-UTR-H-elongata_contig82413:428..443Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82413 429..443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931230.7384694-CDS-H-elongata_contig82413:443..7521622931230.7384694-CDS-H-elongata_contig82413:443..752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82413 444..752 +
1691679751.7308388-CDS-H-elongata_contig82413:443..7521691679751.7308388-CDS-H-elongata_contig82413:443..752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82413 444..752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82413.15896.1prot_H-elongata_contig82413.15896.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82413 444..752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82413.15896.1

>prot_H-elongata_contig82413.15896.1 ID=prot_H-elongata_contig82413.15896.1|Name=mRNA_H-elongata_contig82413.15896.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MALKVASHASPISRAAAAAARGGGTISLPDATQDGGSGGGVQLTTHTRPA
GQGDRPRRAWAPPLQTFNLMVEGSEEGPSEQPQSQQRPHDLPLGRGEQRR
PGE
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mRNA from alignment at H-elongata_contig82413:429..752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82413.15896.1 ID=mRNA_H-elongata_contig82413.15896.1|Name=mRNA_H-elongata_contig82413.15896.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig82413:429..752+ (Himanthalia elongata Himel1 dioecious)
GGAAAGCGCGAGCGGATGGCCCTTAAGGTCGCCTCCCACGCGTCCCCCAT
CAGCCGTGCGGCCGCCGCTGCCGCTCGCGGGGGCGGCACGATTTCTCTCC
CGGATGCAACGCAAGATGGGGGCAGCGGCGGCGGAGTCCAGCTCACGACA
CACACCAGGCCCGCGGGCCAGGGTGATAGGCCCAGGCGCGCATGGGCCCC
GCCCTTACAGACCTTCAACCTGATGGTTGAAGGGAGCGAAGAGGGCCCCT
CGGAGCAGCCTCAATCGCAGCAGCGCCCCCATGATCTCCCCCTCGGGCGG
GGGGAGCAGCGGAGACCCGGGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig82413:429..752+

>mRNA_H-elongata_contig82413.15896.1 ID=mRNA_H-elongata_contig82413.15896.1|Name=mRNA_H-elongata_contig82413.15896.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig82413:429..752+ (Himanthalia elongata Himel1 dioecious)
ATGGCCCTTAAGGTCGCCTCCCACGCGTCCCCCATCAGCCGTGCGGCCGC
CGCTGCCGCTCGCGGGGGCGGCACGATTTCTCTCCCGGATGCAACGCAAG
ATGGGGGCAGCGGCGGCGGAGTCCAGCTCACGACACACACCAGGCCCGCG
GGCCAGGGTGATAGGCCCAGGCGCGCATGGGCCCCGCCCTTACAGACCTT
CAACCTGATGGTTGAAGGGAGCGAAGAGGGCCCCTCGGAGCAGCCTCAAT
CGCAGCAGCGCCCCCATGATCTCCCCCTCGGGCGGGGGGAGCAGCGGAGA
CCCGGGGAGATGGCCCTTAAGGTCGCCTCCCACGCGTCCCCCATCAGCCG
TGCGGCCGCCGCTGCCGCTCGCGGGGGCGGCACGATTTCTCTCCCGGATG
CAACGCAAGATGGGGGCAGCGGCGGCGGAGTCCAGCTCACGACACACACC
AGGCCCGCGGGCCAGGGTGATAGGCCCAGGCGCGCATGGGCCCCGCCCTT
ACAGACCTTCAACCTGATGGTTGAAGGGAGCGAAGAGGGCCCCTCGGAGC
AGCCTCAATCGCAGCAGCGCCCCCATGATCTCCCCCTCGGGCGGGGGGAG
CAGCGGAGACCCGGGGAG
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