mRNA_H-elongata_contig120703.1589.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120703.1589.1
Unique NamemRNA_H-elongata_contig120703.1589.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: A0A182HEZ5_AEDAL (CCHC-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HEZ5_AEDAL)

HSP 1 Score: 56.6 bits (135), Expect = 1.600e-7
Identity = 29/95 (30.53%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   13 AVLGGKIGDE-RWVCDTGASQHLSNDSAHMLDFRECQTFMRTASGKRFPIEGHGD-LILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVADSG 291
            A  GG   DE +W+ DTG S+H++  +  +  +      +  A G+    +G G   I+    EGE+ ++K++ + YVP+LS N+L++  + D G
Sbjct:   88 ATTGGCASDEEKWIVDTGCSKHMTRSTVSLGWWNPYAEKVSVADGRTVKAKGSGTGRIIGRGLEGEIVDIKVKELLYVPELSTNVLSVSRMTDEG 182          
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: UPI0016589FE9 (uncharacterized protein LOC118514016 isoform X1 n=1 Tax=Anopheles stephensi TaxID=30069 RepID=UPI0016589FE9)

HSP 1 Score: 56.2 bits (134), Expect = 4.640e-7
Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 1
Query:   37 DERWVCDTGASQHLSND-SAHMLDFRECQTFMRTASGKRFPIEGHGDLILHFRCE-GEVANLKLRNVAYVPQLSHNLLTLREVADSG 291
            D  W+ D+GAS H+ +D SA  +  +  ++ +  A G    +EG GD ++    E GE+  + LR V YVP L  N++++ ++A+ G
Sbjct:  269 DRSWLIDSGASSHMCSDKSAFTVMEQSLRSNVTVADGSENRVEGVGDCLIKCAVENGEIIEITLRGVLYVPTLEGNMISIGKLAEKG 355          
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: A0A8D8G7H1_CULPI (Copia protein n=2 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8G7H1_CULPI)

HSP 1 Score: 52.0 bits (123), Expect = 1.410e-5
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   37 DERWVCDTGASQHLSNDSAHMLDFRECQ--TFMRTA-SGKRFPIEGHGDLILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVADSG 291
            D RW  D+GAS+H+SND       +E +    ++TA +G        G + +     GE+  + + +V ++P+L+ NLL+LR + +SG
Sbjct:  280 DSRWYLDSGASEHMSNDKEMFESLQELEDPVVIQTAKAGINLLARHKGRVNVQSTVGGEMIEIAIEDVLFIPELTLNLLSLRRLENSG 367          
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: A0A6T8CNI4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A6T8CNI4_9CRYP)

HSP 1 Score: 51.6 bits (122), Expect = 1.920e-5
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 1
Query:   46 WVCDTGASQHLSNDSAHMLDFRECQTFMRTAS-GKRFPIEGHGDL-ILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVA 282
            W+ D+GAS H  NDS+  +  ++C   + TA  G+     G G+  I      GE+ NL L +V YVP+   NLL++ +++
Sbjct:  624 WILDSGASCHFCNDSSKFVSMKKCNVSVSTAKKGESILAIGIGNCQITTQTANGELVNLVLHDVLYVPEARRNLLSVSKLS 704          
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: A0A445KLL8_GLYSO (Uncharacterized protein n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445KLL8_GLYSO)

HSP 1 Score: 50.1 bits (118), Expect = 6.060e-5
Identity = 29/92 (31.52%), Postives = 45/92 (48.91%), Query Frame = 1
Query:   28 KIGDERWVCDTGASQHLSNDSAHMLDFRECQ----TFMRTASGKRFPIEGHGDLILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVADSG 291
            K  D  W  D+G S+H+  D + + DF   +    TF     GK   I G G++       G     +++NV YV +L HNLL++ ++ D G
Sbjct:  171 KARDSLWYLDSGCSRHMMGDKSKLTDFMSKEGGYVTFGDNNKGK---IMGEGNI-------GNQYKTQIKNVLYVDELKHNLLSISQLCDKG 252          
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: A0A0L7KS65_9NEOP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7KS65_9NEOP)

HSP 1 Score: 50.1 bits (118), Expect = 6.070e-5
Identity = 28/95 (29.47%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   10 FAVLGGK--IGDERWVCDTGASQHLSNDSAHMLDFRECQ-TFMRTASGKRFPIEGHGDLILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVAD 285
            F+ LG    +G  +W  D+GAS+H++       D +  + + +  A+G++    G GD+ ++  C   V +  +++VAYVP+L+ NL+++++V D
Sbjct:  146 FSALGVSTCLGKNKWFIDSGASKHMTPRRDWFKDIKPLEGSTVTVANGEKIVCGGIGDISINTACN--VVD-SIKDVAYVPELTSNLISVKKVVD 237          
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: UPI001929BEAC (uncharacterized protein LOC120253897 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929BEAC)

HSP 1 Score: 49.7 bits (117), Expect = 7.640e-5
Identity = 32/97 (32.99%), Postives = 48/97 (49.48%), Query Frame = 1
Query:   10 FAVLGGKIGDER--WVCDTGASQHLSNDSAHMLDFRE-CQTFMRTASGKRFPIEGHGDLILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVADSG 291
            F   GG+  +    W+ D+G S H+S    H  D  E  Q   R   GK   +EG G +       G++  LK   V +VPQL+HNLL++ ++  +G
Sbjct:  169 FMASGGRCVEASSVWLIDSGCSNHMSGIREHFHDLDENVQQVARLGDGKTIKVEGVGTVEFQTN-NGKIKYLK--EVQFVPQLAHNLLSVSQLILTG 262          
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: A0A8H8NUS4_9AGAM (Integrase core domain protein n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8NUS4_9AGAM)

HSP 1 Score: 49.7 bits (117), Expect = 9.360e-5
Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = 1
Query:   19 LGGKIGDERWVCDTGASQHLSNDSAHMLDFRECQTFMRTASGKRFPIEGHGD---LILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVADSG 291
            L GK  D  W+ D+G + H++ D     ++ +   ++   +GK  PI G G    L L+   + E   ++L NVA+VP L  NL++L  V D G
Sbjct:  340 LIGKTPDT-WIADSGTTTHIAIDRNAFSNYTKSSGYVAGVTGKE-PIMGRGTVELLCLNNTEKNEYTKIRLTNVAHVPSLPANLISLSLVTDKG 431          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A182HEZ5_AEDAL1.600e-730.53CCHC-type domain-containing protein n=1 Tax=Aedes ... [more]
UPI0016589FE94.640e-733.33uncharacterized protein LOC118514016 isoform X1 n=... [more]
A0A8D8G7H1_CULPI1.410e-531.82Copia protein n=2 Tax=Culex pipiens TaxID=7175 Rep... [more]
A0A6T8CNI4_9CRYP1.920e-534.57Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A445KLL8_GLYSO6.060e-531.52Uncharacterized protein n=1 Tax=Glycine soja TaxID... [more]
A0A0L7KS65_9NEOP6.070e-529.47Retrovirus-related Pol polyprotein from transposon... [more]
UPI001929BEAC7.640e-532.99uncharacterized protein LOC120253897 n=1 Tax=Diosc... [more]
A0A8H8NUS4_9AGAM9.360e-532.98Integrase core domain protein n=2 Tax=Rhizoctonia ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120703contigH-elongata_contig120703:256..546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.5902634-CDS-H-elongata_contig120703:255..5461622929708.5902634-CDS-H-elongata_contig120703:255..546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120703 256..546 -
1691679127.3731153-CDS-H-elongata_contig120703:255..5461691679127.3731153-CDS-H-elongata_contig120703:255..546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120703 256..546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120703.1589.1prot_H-elongata_contig120703.1589.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120703 256..546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120703.1589.1

>prot_H-elongata_contig120703.1589.1 ID=prot_H-elongata_contig120703.1589.1|Name=mRNA_H-elongata_contig120703.1589.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
FERFAVLGGKIGDERWVCDTGASQHLSNDSAHMLDFRECQTFMRTASGKR
FPIEGHGDLILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVADSG
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mRNA from alignment at H-elongata_contig120703:256..546-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120703.1589.1 ID=mRNA_H-elongata_contig120703.1589.1|Name=mRNA_H-elongata_contig120703.1589.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig120703:256..546- (Himanthalia elongata Himel1 dioecious)
TTTGAGCGATTTGCGGTTTTGGGTGGTAAGATTGGGGACGAGCGTTGGGT GTGTGACACCGGCGCTTCGCAGCATTTAAGCAATGACTCTGCGCACATGC TCGATTTCCGCGAATGTCAAACGTTTATGCGGACGGCTAGCGGAAAGAGA TTCCCGATCGAGGGTCACGGTGACCTTATCTTGCACTTTCGGTGTGAGGG AGAGGTGGCAAATCTCAAGCTTCGCAATGTAGCGTATGTGCCACAACTCT CTCACAATCTGTTAACACTAAGAGAAGTAGCCGACAGTGGA
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Coding sequence (CDS) from alignment at H-elongata_contig120703:256..546-

>mRNA_H-elongata_contig120703.1589.1 ID=mRNA_H-elongata_contig120703.1589.1|Name=mRNA_H-elongata_contig120703.1589.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig120703:256..546- (Himanthalia elongata Himel1 dioecious)
TTTGAGCGATTTGCGGTTTTGGGTGGTAAGATTGGGGACGAGCGTTGGGT
GTGTGACACCGGCGCTTCGCAGCATTTAAGCAATGACTCTGCGCACATGC
TCGATTTCCGCGAATGTCAAACGTTTATGCGGACGGCTAGCGGAAAGAGA
TTCCCGATCGAGGGTCACGGTGACCTTATCTTGCACTTTCGGTGTGAGGG
AGAGGTGGCAAATCTCAAGCTTCGCAATGTAGCGTATGTGCCACAACTCT
CTCACAATCTGTTAACACTAAGAGAAGTAGCCGACAGTGGATTTGAGCGA
TTTGCGGTTTTGGGTGGTAAGATTGGGGACGAGCGTTGGGTGTGTGACAC
CGGCGCTTCGCAGCATTTAAGCAATGACTCTGCGCACATGCTCGATTTCC
GCGAATGTCAAACGTTTATGCGGACGGCTAGCGGAAAGAGATTCCCGATC
GAGGGTCACGGTGACCTTATCTTGCACTTTCGGTGTGAGGGAGAGGTGGC
AAATCTCAAGCTTCGCAATGTAGCGTATGTGCCACAACTCTCTCACAATC
TGTTAACACTAAGAGAAGTAGCCGACAGTGGA
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