mRNA_H-elongata_contig82262.15882.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82262.15882.1
Unique NamemRNA_H-elongata_contig82262.15882.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig82262.15882.1 vs. uniprot
Match: A0A6H5JPJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ6_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 3.520e-50
Identity = 89/165 (53.94%), Postives = 110/165 (66.67%), Query Frame = 1
Query:    1 SAALNFLESKKRIVEDLRPEDYTAVDIMIGASVGAHVRHSLDHFVRCL-AVLNNTDQDESDNAEAAKESIRYDYRERGGTVETDPVAAVKVMSCLLKQLHTLPRGSAGSEKLRGMVVAPAFLLGEGGASAAGDQEHQFTSNFERELFFCCHHGIHHDAMIRLILK 492
            SAA+ FL+ KKR+V+ L P DY  +D   GASVG H+RH+LDHF +CL A       DE         +IRYD+R RGGT+ETDP AA + +S LL+QL +LPR    ++ LR   VAP F+LG GG      +E+ F SN ERELFFCCHHG HHDAMIRLIL+
Sbjct:   59 SAAMRFLQGKKRLVDCLSPADYARMDPATGASVGGHLRHTLDHFSKCLQAAQQQPAPDEDAVPTTTPVTIRYDHRVRGGTIETDPAAASRSISSLLQQLQSLPR----ADYLRAKRVAPMFMLGLGGGDNGIKEEYGFESNLERELFFCCHHGTHHDAMIRLILR 219          
BLAST of mRNA_H-elongata_contig82262.15882.1 vs. uniprot
Match: D7FP30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP30_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 7.170e-49
Identity = 87/165 (52.73%), Postives = 109/165 (66.06%), Query Frame = 1
Query:    1 SAALNFLESKKRIVEDLRPEDYTAVDIMIGASVGAHVRHSLDHFVRCL-AVLNNTDQDESDNAEAAKESIRYDYRERGGTVETDPVAAVKVMSCLLKQLHTLPRGSAGSEKLRGMVVAPAFLLGEGGASAAGDQEHQFTSNFERELFFCCHHGIHHDAMIRLILK 492
            SAA+ FL+ KKR+V+ L P DY  +D  IGASVG H+RH+LDHF +CL A       DE         +IRYD+R RGG +ETDP AA + +S LL+QL +LP     +  LR   VAP F+LG GG      +E++F SN ERELFFCCHHG HHDAMI+LIL+
Sbjct:   55 SAAMRFLQGKKRLVDCLSPADYAHMDPAIGASVGGHLRHTLDHFSKCLQAAQQQPAPDEDAVPTTTPVTIRYDHRARGGNIETDPAAASRSISSLLQQLQSLPT----ARYLRAKRVAPMFMLGLGGDDNNSTKEYEFESNLERELFFCCHHGTHHDAMIQLILR 215          
BLAST of mRNA_H-elongata_contig82262.15882.1 vs. uniprot
Match: A0A7S1U1W9_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U1W9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.910e-17
Identity = 62/167 (37.13%), Postives = 73/167 (43.71%), Query Frame = 1
Query:    1 SAALNFLESKKRIVEDL---RPEDYTAVDIMIGASVGAHVRHSLDHFVRCLAVLNNTDQDESDNAEAAKESIRYDYRERGGTVETDPVAAVKVMSCLLKQLHTLPRGSAGSEKLRGMVVAPAFLLGEGGASAAGDQEHQFTSNFERELFFCCHHGIHHDAMIRLILK 492
            SAA   L +K  ++  L   R E YTAV    GASVG H+RHSL HF   L                    + YD RERG  +ETD   A   +  L   +  +P    G        V   F+L   G       EH F S  ERELFF  HH +HHDA I  ILK
Sbjct:  103 SAAAFSLRNKGELLASLQERRAEAYTAVSPSQGASVGQHMRHSLQHFTALLKREGGA-------------VVAYDKRERGNAIETDLEEARATIRDLEATIGGIPEDGLGER------VRVRFMLNGDGL------EHDFESTLERELFFVVHHSVHHDATIGTILK 244          
BLAST of mRNA_H-elongata_contig82262.15882.1 vs. uniprot
Match: A0A651FK36_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A651FK36_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 2.220e-15
Identity = 54/162 (33.33%), Postives = 77/162 (47.53%), Query Frame = 1
Query:    4 AALNFLESKKRIVEDLRPEDYTA-VDIMIGASVGAHVRHSLDHFVRCLAVLNNTDQDESDNAEAAKESIRYDYRERGGTVETDPVAAVKVMSCLLKQLHTLPRGSAGSEKLRGMVVAPAFLLGEGGASAAGDQEHQFTSNFERELFFCCHHGIHHDAMIRLI 486
            AA+  L+  +  +  +  E YTA    M GA++G H+RH+LDHF+  +  L +             E+I YD+RER   VE     A+  +  L   L   P  +A       +V     L  +G       QE + TS+F REL F  HH IHH+AMI +I
Sbjct:   20 AAVALLQQCRACLGQVSDEQYTASCATMFGATIGQHMRHTLDHFIAAMDALED-------------ETIDYDHRERDTDVEKQRRIAMDTIDTLCALLQATPVEAADR-----LVTVRVMLSPDG-------QETELTSSFARELAFATHHAIHHNAMIAVI 156          
BLAST of mRNA_H-elongata_contig82262.15882.1 vs. uniprot
Match: A0A1W0A6L6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6L6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 9.200e-15
Identity = 53/159 (33.33%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   16 FLESKKRIVEDLRPEDYTAVDIMIGASVGAHVRHSLDHFVRCLAVLNNTDQDESDNAEAAKESIRYDYRERGGTVETDPVAAVKVMSCLLKQLHTLPRGSAGSEKLRGMVVAPAFLLGEGGASAAGDQEHQFTSNFERELFFCCHHGIHHDAMIRLILK 492
             L+ + +++  +  + YT    ++  + G H+RHSLDH  R LA  +       D ++  +  IRYD R R   VE D  AA+  M  +L     +       + LR  V A   L  EG       +E +  S  ERE+ F  HHGIHH+AMI+ ILK
Sbjct:   11 ILKQQSKLLRGISDDVYTFRCPVLEGTTGGHIRHSLDHLRRSLACPDE------DTSKPHEPLIRYDIRARNTAVELDRHAAMDEMDYILSLAAHVDH-----DYLRQPVRAAFMLTAEG-------KETEIHSTIEREMAFAVHHGIHHNAMIKTILK 151          
BLAST of mRNA_H-elongata_contig82262.15882.1 vs. uniprot
Match: A0A2D4BFS8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFS8_PYTIN)

HSP 1 Score: 77.4 bits (189), Expect = 1.670e-14
Identity = 53/165 (32.12%), Postives = 80/165 (48.48%), Query Frame = 1
Query:    1 SAALNFLESKKRIVEDLRPEDYTAVDIMIGASVGAHVRHSLDHFVRCL-AVLNNTDQDESDNAEAAKESIRYDYRERGGTVETDPVAAVKVMSCLLKQLHTLPRGSAGSEKLRGMVVAPAFLLGEGGASAAGDQEHQFTSNFERELFFCCHHGIHHDAMIRLILK 492
            +  L  L+ +  ++  L PE YT    ++  ++G H RHSLDH  + L AVL            AA ++I YD R R  +VET   AA + +  + + L  L   SA         V  AF+L      +A   E  F S   RE+ F  HH IHH+A+++++L+
Sbjct:   34 ACVLAMLDQQDALLASLSPEQYTFHSALLQGTIGQHTRHSLDHLRKPLEAVL------------AADDTIHYDLRARQTSVETSQQAAREQIEEIRRNLDMLAERSALVHP-----VQAAFML------SADGTEFAFASTLSREMAFAVHHCIHHNALVKVLLR 175          
BLAST of mRNA_H-elongata_contig82262.15882.1 vs. uniprot
Match: A0A7S4T454_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T454_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.140e-13
Identity = 50/142 (35.21%), Postives = 69/142 (48.59%), Query Frame = 1
Query:   82 MIGASVGAHVRHSLDHFVRCLAVLNNTDQDESDNAEAAKE----SIRYDYRERGGTVETDPVAAVKVMSCLLKQLHTLPRGSAGSEK---LRGMVVAPAFLLGEGGASAAGDQEHQFTSNFERELFFCCHHGIHHDAMIRLI 486
            +IGAS+G H RHS+DH +   A++ +T   E  NA  ++      + YD R RGGT+E D   + K +  ++     L       E        VVA  +L         G QE   TS   REL FC HH IHH AM+++I
Sbjct:   46 LIGASIGQHYRHSMDH-IELAALVASTGTAEGINANNSENISTPPLHYDLRVRGGTLEHDMDESRKRILSVMDIFQDLELKQQTEESNVITNCPVVAHFYLSPSEDEKGGGSQEIGLTSTIGRELGFCAHHAIHHMAMVKII 186          
BLAST of mRNA_H-elongata_contig82262.15882.1 vs. uniprot
Match: A0A067BN55_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BN55_SAPPC)

HSP 1 Score: 72.4 bits (176), Expect = 6.780e-13
Identity = 54/159 (33.96%), Postives = 73/159 (45.91%), Query Frame = 1
Query:   16 FLESKKRIVEDLRPEDYTAVDIMIGASVGAHVRHSLDHFVRCLAVLNNTDQDESDNAEAAKESIRYDYRERGGTVETDPVAAVKVMSCLLKQLHTLPRGSAGSEKLRGMVVAPAFLLGEGGASAAGDQEHQFTSNFERELFFCCHHGIHHDAMIRLILK 492
             L+ +  +++ L  + Y     ++  + G HVRHSLDH  R L V         D+A      IRYD R R   +E D VAA+  M       H L   +A +       V  AF+L       A   E Q  S  ERE+ F  HH IHH+AMI+ IL+
Sbjct:   10 ILQQQSALLQTLSNDMYVFRCPILMGTTGGHVRHSLDHLRRSLDV---------DHAG----HIRYDIRVRNTAIELDRVAAMDEMD------HILSLAAAVAPSHLTSPVRAAFML------TADGNEVQLASTIEREMAFAVHHAIHHNAMIKTILR 143          
BLAST of mRNA_H-elongata_contig82262.15882.1 vs. uniprot
Match: A0A6U3Y5M0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3Y5M0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.280e-13
Identity = 50/137 (36.50%), Postives = 71/137 (51.82%), Query Frame = 1
Query:   82 MIGASVGAHVRHSLDHFVRCLAVLNNTDQDESDNAEAAKESIRYDYRERGGTVETDPVAAVKVMSCLLKQLHTLPR--GSAGSEKLRGMVVAPAFLLGEGGASAAGDQEHQFTSNFERELFFCCHHGIHHDAMIRLI 486
            ++GAS+G H RHS+DH V   A++ ++ QD S   +   + + YD R RGGT+E D V + K +S +     +L     +  +E      V   F L    A+  G       S  EREL FC HH IHH AM+R+I
Sbjct:   41 IVGASIGQHYRHSMDH-VELAALVASSAQDASMQQQQLGD-LHYDLRVRGGTLEKDLVESRKRLSDVSDVFKSLSATIDAGNTEITTATPVTVYFNLAADDAAEIG-----LPSTVERELGFCAHHAIHHLAMVRII 170          
BLAST of mRNA_H-elongata_contig82262.15882.1 vs. uniprot
Match: A0A5Q4EQU3_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A5Q4EQU3_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 1.590e-12
Identity = 55/159 (34.59%), Postives = 72/159 (45.28%), Query Frame = 1
Query:    4 AALNFLESKKRIVEDLRPEDYTAVDIMI-GASVGAHVRHSLDHFVRCLAVLNNTDQDESDNAEAAKESIRYDYRERGGTVETDPVAAVKVMSCLLKQLHTLPRGSAGSEKLRGMVVAPAFLLGEGGASAAGDQEHQFTSNFERELFFCCHHGIHHDAMI 477
            AAL  L     ++E +  E YT     + GA+VG H+RH+LDHF   L+ L+              E IRYD R+RG  +ET    A+  +  L   L     G+  SE+  G+ V    LL         D E +  S   REL F  HH  HH AMI
Sbjct:   19 AALRLLSDGASLLERISDEQYTLPSPALRGATVGQHIRHTLDHFSAILSSLSG-------------EPIRYDQRKRGTVIETSRSDAMDRVGQLSDAL-----GALDSER-SGVQVTVVSLLNP------DDPETELESTLARELAFATHHATHHHAMI 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82262.15882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPJ6_9PHAE3.520e-5053.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP30_ECTSI7.170e-4952.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1U1W9_9STRA2.910e-1737.13Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A651FK36_9BACT2.220e-1533.33Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A1W0A6L6_9STRA9.200e-1533.33Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2D4BFS8_PYTIN1.670e-1432.12Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S4T454_9STRA4.140e-1335.21Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A067BN55_SAPPC6.780e-1333.96Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A6U3Y5M0_9STRA8.280e-1336.50Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A5Q4EQU3_9BACT1.590e-1234.59Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82262contigH-elongata_contig82262:1690..2181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue2.5e-38
Seed eggNOG ortholog2880.D7FP30
EggNOG OGs2CY9V@1,2S326@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_002280.1
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931229.4554365-CDS-H-elongata_contig82262:1689..21811622931229.4554365-CDS-H-elongata_contig82262:1689..2181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82262 1690..2181 -
1691679751.1078181-CDS-H-elongata_contig82262:1689..21811691679751.1078181-CDS-H-elongata_contig82262:1689..2181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82262 1690..2181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82262.15882.1prot_H-elongata_contig82262.15882.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82262 1690..2181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82262.15882.1

>prot_H-elongata_contig82262.15882.1 ID=prot_H-elongata_contig82262.15882.1|Name=mRNA_H-elongata_contig82262.15882.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
SAALNFLESKKRIVEDLRPEDYTAVDIMIGASVGAHVRHSLDHFVRCLAV
LNNTDQDESDNAEAAKESIRYDYRERGGTVETDPVAAVKVMSCLLKQLHT
LPRGSAGSEKLRGMVVAPAFLLGEGGASAAGDQEHQFTSNFERELFFCCH
HGIHHDAMIRLILK
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mRNA from alignment at H-elongata_contig82262:1690..2181-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82262.15882.1 ID=mRNA_H-elongata_contig82262.15882.1|Name=mRNA_H-elongata_contig82262.15882.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=492bp|location=Sequence derived from alignment at H-elongata_contig82262:1690..2181- (Himanthalia elongata Himel1 dioecious)
TCGGCAGCGCTCAATTTCCTCGAAAGCAAGAAGAGAATCGTAGAGGATCT CCGCCCGGAAGACTACACCGCGGTGGACATTATGATCGGCGCATCGGTTG GAGCCCATGTCCGGCACTCGCTCGATCACTTCGTCAGATGTCTTGCCGTC CTCAACAACACTGACCAAGACGAGAGCGACAACGCTGAGGCTGCCAAGGA AAGTATAAGGTATGATTATCGCGAGAGAGGGGGAACGGTCGAGACTGACC CAGTGGCGGCAGTCAAAGTCATGTCATGTCTTCTTAAACAGCTGCATACT CTGCCCCGTGGCAGTGCTGGTTCCGAAAAACTCCGCGGTATGGTGGTGGC GCCAGCCTTTCTCTTGGGCGAAGGGGGCGCCTCCGCGGCTGGCGATCAGG AGCACCAATTCACCAGTAACTTCGAGCGGGAGCTGTTCTTCTGCTGTCAC CACGGCATCCACCATGATGCAATGATCCGACTGATTCTCAAA
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Coding sequence (CDS) from alignment at H-elongata_contig82262:1690..2181-

>mRNA_H-elongata_contig82262.15882.1 ID=mRNA_H-elongata_contig82262.15882.1|Name=mRNA_H-elongata_contig82262.15882.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig82262:1690..2181- (Himanthalia elongata Himel1 dioecious)
TCGGCAGCGCTCAATTTCCTCGAAAGCAAGAAGAGAATCGTAGAGGATCT
CCGCCCGGAAGACTACACCGCGGTGGACATTATGATCGGCGCATCGGTTG
GAGCCCATGTCCGGCACTCGCTCGATCACTTCGTCAGATGTCTTGCCGTC
CTCAACAACACTGACCAAGACGAGAGCGACAACGCTGAGGCTGCCAAGGA
AAGTATAAGGTATGATTATCGCGAGAGAGGGGGAACGGTCGAGACTGACC
CAGTGGCGGCAGTCAAAGTCATGTCATGTCTTCTTAAACAGCTGCATACT
CTGCCCCGTGGCAGTGCTGGTTCCGAAAAACTCCGCGGTATGGTGGTGGC
GCCAGCCTTTCTCTTGGGCGAAGGGGGCGCCTCCGCGGCTGGCGATCAGG
AGCACCAATTCACCAGTAACTTCGAGCGGGAGCTGTTCTTCTGCTGTCAC
CACGGCATCCACCATGATGCAATGATCCGACTGATTCTCAAATCGGCAGC
GCTCAATTTCCTCGAAAGCAAGAAGAGAATCGTAGAGGATCTCCGCCCGG
AAGACTACACCGCGGTGGACATTATGATCGGCGCATCGGTTGGAGCCCAT
GTCCGGCACTCGCTCGATCACTTCGTCAGATGTCTTGCCGTCCTCAACAA
CACTGACCAAGACGAGAGCGACAACGCTGAGGCTGCCAAGGAAAGTATAA
GGTATGATTATCGCGAGAGAGGGGGAACGGTCGAGACTGACCCAGTGGCG
GCAGTCAAAGTCATGTCATGTCTTCTTAAACAGCTGCATACTCTGCCCCG
TGGCAGTGCTGGTTCCGAAAAACTCCGCGGTATGGTGGTGGCGCCAGCCT
TTCTCTTGGGCGAAGGGGGCGCCTCCGCGGCTGGCGATCAGGAGCACCAA
TTCACCAGTAACTTCGAGCGGGAGCTGTTCTTCTGCTGTCACCACGGCAT
CCACCATGATGCAATGATCCGACTGATTCTCAAA
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