mRNA_H-elongata_contig81711.15838.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81711.15838.1
Unique NamemRNA_H-elongata_contig81711.15838.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig81711.15838.1 vs. uniprot
Match: D7FKF2_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKF2_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 2.350e-64
Identity = 96/129 (74.42%), Postives = 109/129 (84.50%), Query Frame = 1 
Query:   16 SQVSVHYTGKLKDGKVFDTSARRGPISFALGKGEVIRGWDYAVSTMQKGEKAIVTIGPNYGYGVEGSGPIPPNATLTFEMEVVGWDKPPLIEWYQWIGLLVILGILVYVFVFDDEKDILRKSLESPREL 402
            S VSVHYTGKLKDG  FDTSA RGPI FALGKGEVIRGWDYAVSTMQKGE+AI+T+GP YGYG   +GPIP NATLTFEMEV+GW+K P+ + YQW GL+ ++GI++YV   DDE DILRKSLES REL
Sbjct:   64 SSVSVHYTGKLKDGTEFDTSAGRGPIKFALGKGEVIRGWDYAVSTMQKGERAILTVGPEYGYGGRATGPIPANATLTFEMEVMGWEKAPVFQIYQWAGLIFMIGIVIYVLFVDDEGDILRKSLESSREL 192
[Close]
BLAST of mRNA_H-elongata_contig81711.15838.1 vs. uniprot
Match: A0A6T0HFP5_EMIHU (Peptidylprolyl isomerase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6T0HFP5_EMIHU)

HSP 1 Score: 117 bits (293), Expect = 4.760e-31
Identity = 63/111 (56.76%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:   22 VSVHYTGKLKDGKVFDTSARRG-PISFALGKGEVIRGWDYAVSTMQKGEKAIVTIGPNYGYGVEGSGPIPPNATLTFEMEVVGWDKPPLIEWYQWIGLLVI----LGILVY 339
            V VHYTG L DG VFD+S  RG PI F LG GEVI GWD  VS+MQ GE A++TI P +GYG  G+GPIPPNATLTFE+E+V    P L   +++ GL V+    LG+++Y
Sbjct:   29 VEVHYTGSLADGSVFDSSRSRGKPIDFTLGMGEVIPGWDLGVSSMQVGEAAVLTIPPEFGYGSSGAGPIPPNATLTFEVELVSAADPALPASFKY-GLPVVALFALGLIIY 138
[Close]
BLAST of mRNA_H-elongata_contig81711.15838.1 vs. uniprot
Match: A0A8J5XEN7_DIALT (Peptidylprolyl isomerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XEN7_DIALT)

HSP 1 Score: 110 bits (275), Expect = 3.050e-28
Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:   16 SQVSVHYTGKLKDGKVFDTSARRG-PISFALGKGEVIRGWDYAVSTMQKGEKAIVTIGPNYGYGVEGSGPIPPNATLTFEMEVVGWD 273
            S V+VHYTGKL DGKVFD+S  RG P SF L +G VI GWD  V+TM  GE+A++TI P  GYG    GPIPPN+TLTFE+E+V W 
Sbjct:   33 STVNVHYTGKLADGKVFDSSRTRGQPFSFELEQGNVIAGWDRGVATMTVGEQAVLTIAPELGYGSRAVGPIPPNSTLTFEVELVSWS 119
[Close]
BLAST of mRNA_H-elongata_contig81711.15838.1 vs. uniprot
Match: A0A481SYN1_9HYME (Peptidylprolyl isomerase n=1 Tax=Aphelinus abdominalis TaxID=297830 RepID=A0A481SYN1_9HYME)

HSP 1 Score: 109 bits (273), Expect = 8.110e-26
Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:   22 VSVHYTGKLKDGKVFDTSARRG-PISFALGKGEVIRGWDYAVSTMQKGEKAIVTIGPNYGYGVEGSGP-IPPNATLTFEMEVVGWDKPPL 285
            V VHYTGKL DG VFD+S  RG P  F LG G+VI+GWD  + TM+KGEKAI+T  P Y YG  GS P IPP+ATL FE+E++GWD   L
Sbjct:   34 VRVHYTGKLLDGTVFDSSVERGQPFKFELGLGQVIKGWDAGIKTMKKGEKAILTCSPEYAYGKAGSPPNIPPDATLKFEVELLGWDAEDL 123
[Close]
BLAST of mRNA_H-elongata_contig81711.15838.1 vs. uniprot
Match: A0A2H0BE81_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candidatus Zambryskibacteria bacterium CG22_combo_CG10-13_8_21_14_all_42_17 TaxID=1975118 RepID=A0A2H0BE81_9BACT)

HSP 1 Score: 103 bits (256), Expect = 2.240e-25
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:   22 VSVHYTGKLKDGKVFDTSARRG-PISFALGKGEVIRGWDYAVSTMQKGEKAIVTIGPNYGYGVEGSGPIPPNATLTFEMEVVGWDKP 279
            ++VHY G L DGKVFD+S  RG PISF LG  +VIRGWD  +  MQ G K  + I P+Y YG EG+GPIPPN+TL FE+E++  +KP
Sbjct:   69 LTVHYVGTLTDGKVFDSSLDRGAPISFTLGVAQVIRGWDEGLVGMQVGGKRTLIIAPDYAYGAEGAGPIPPNSTLIFEVELIDVEKP 155
[Close]
BLAST of mRNA_H-elongata_contig81711.15838.1 vs. uniprot
Match: A0A1G2V6H2_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candidatus Zambryskibacteria bacterium RIFOXYD2_FULL_43_10 TaxID=1802782 RepID=A0A1G2V6H2_9BACT)

HSP 1 Score: 100 bits (249), Expect = 1.120e-24
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:   22 VSVHYTGKLKDGKVFDTSARRG-PISFALGKGEVIRGWDYAVSTMQKGEKAIVTIGPNYGYGVEGSGPIPPNATLTFEMEVVGWDKP 279
            ++VHY G L DGKVFD+S  R  P SF LG G+VIRGWD   S MQ G K ++ + P+YGYG +G G IPPN+TL FE+E++  +KP
Sbjct:   39 LTVHYVGTLSDGKVFDSSLDRNTPFSFTLGVGQVIRGWDEGFSGMQVGGKRLIIVAPDYGYGEQGVGTIPPNSTLIFEVELLDVEKP 125
[Close]
BLAST of mRNA_H-elongata_contig81711.15838.1 vs. uniprot
Match: A0A443SAX5_9ACAR (Peptidylprolyl isomerase n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SAX5_9ACAR)

HSP 1 Score: 106 bits (265), Expect = 1.820e-24
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:   19 QVSVHYTGKLKDGKVFDTSARRGP-ISFALGKGEVIRGWDYAVSTMQKGEKAIVTIGPNYGYGVEGSGP-IPPNATLTFEMEVVGW 270
            +V VHYTG L+DG +FD+S  RG   SF LGKGEVI+GWD AV TM++GEKA VT+ P Y YG  GS P IPPN+TL FE+E+  W
Sbjct:   54 KVEVHYTGSLEDGTIFDSSVERGEKFSFTLGKGEVIKGWDVAVKTMKRGEKAKVTLKPEYAYGERGSPPKIPPNSTLIFEIELFDW 139
[Close]
BLAST of mRNA_H-elongata_contig81711.15838.1 vs. uniprot
Match: A0A150G5G5_GONPE (Peptidylprolyl isomerase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G5G5_GONPE)

HSP 1 Score: 99.4 bits (246), Expect = 1.820e-24
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:   19 QVSVHYTGKLKDGKVFDTSARRG-PISFALGKGEVIRGWDYAVSTMQKGEKAIVTIGPNYGYGVEGS-GPIPPNATLTFEMEVV 264
            +V+VHYTG L +GK FD+S  RG P  F +G+G+VIRGWD  V+TM  GE+AI+TI P+YGYG  G+ G IPPNATL F++E++
Sbjct:   22 KVTVHYTGTLTNGKQFDSSRTRGQPFVFTIGRGQVIRGWDEGVATMSVGERAILTISPDYGYGAAGAAGVIPPNATLIFDVELL 105
[Close]
BLAST of mRNA_H-elongata_contig81711.15838.1 vs. uniprot
Match: A0A3N5TTK4_9DELT (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3N5TTK4_9DELT)

HSP 1 Score: 103 bits (256), Expect = 2.600e-24
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:   16 SQVSVHYTGKLKDGKVFDTSARRG-PISFALGKGEVIRGWDYAVSTMQKGEKAIVTIGPNYGYGVEGSGPIPPNATLTFEMEVVGW 270
            + VSVHYTGKL DGK FD+S  RG PI F +G G+VI+GWD A+  M+KGEK ++ I P  GYG  G GPIPPNAT+ F++E+V +
Sbjct:  176 AMVSVHYTGKLLDGKKFDSSYDRGKPIDFPVGNGQVIKGWDEALLGMKKGEKRVLIIPPELGYGPSGRGPIPPNATMVFDVELVNF 261
[Close]
BLAST of mRNA_H-elongata_contig81711.15838.1 vs. uniprot
Match: A0A835Z8L2_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.110e-24
Identity = 58/119 (48.74%), Postives = 77/119 (64.71%), Query Frame = 1 
Query:    1 MLSLTSQVSVHYTGKLKDGKVFDTSARRG-PISFALGKGEVIRGWDYAVSTMQKGEKAIVTIGPNYGYGVEGSG-PIPPNATLTFEMEVVGW-DKPPLIEWYQW--IGLLVILGILVYV 342
            ++ + S V V Y G  +D +VFD+SAR G P SF LG+ EVI GWD  V++MQ+GEK ++   P Y YG  GSG  IPPN TL FE+E++GW + PP    Y +  + LL+I  IL YV
Sbjct:   56 LVPMNSIVFVEYVGMFEDKRVFDSSARAGRPFSFRLGRQEVIPGWDVGVASMQRGEKCVLKCTPGYAYGRNGSGGTIPPNTTLYFEVELLGWRELPPEPVNYAFYAVVLLIIAAILTYV 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81711.15838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKF2_ECTSI2.350e-6474.42Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6T0HFP5_EMIHU4.760e-3156.76Peptidylprolyl isomerase n=2 Tax=Emiliania huxleyi... [more]
A0A8J5XEN7_DIALT3.050e-2862.07Peptidylprolyl isomerase n=1 Tax=Diacronema luther... [more]
A0A481SYN1_9HYME8.110e-2661.11Peptidylprolyl isomerase n=1 Tax=Aphelinus abdomin... [more]
A0A2H0BE81_9BACT2.240e-2557.47Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candid... [more]
A0A1G2V6H2_9BACT1.120e-2455.17Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candid... [more]
A0A443SAX5_9ACAR1.820e-2461.63Peptidylprolyl isomerase n=1 Tax=Leptotrombidium d... [more]
A0A150G5G5_GONPE1.820e-2458.33Peptidylprolyl isomerase n=1 Tax=Gonium pectorale ... [more]
A0A3N5TTK4_9DELT2.600e-2458.14Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A835Z8L2_9STRA3.110e-2448.74Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81711contigH-elongata_contig81711:1172..2818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.8
Seed ortholog evalue5.2e-50
Seed eggNOG ortholog2880.D7FKF2
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,KOG0543@2759
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-12_002280.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size405
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931224.9724345-CDS-H-elongata_contig81711:1171..14911622931224.9724345-CDS-H-elongata_contig81711:1171..1491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81711 1172..1491 -
1691679749.2840054-CDS-H-elongata_contig81711:1171..14911691679749.2840054-CDS-H-elongata_contig81711:1171..1491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81711 1172..1491 -
1622931224.9903738-CDS-H-elongata_contig81711:2733..28181622931224.9903738-CDS-H-elongata_contig81711:2733..2818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81711 2734..2818 -
1691679749.2979927-CDS-H-elongata_contig81711:2733..28181691679749.2979927-CDS-H-elongata_contig81711:2733..2818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81711 2734..2818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81711.15838.1prot_H-elongata_contig81711.15838.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81711 1172..2818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81711.15838.1

>prot_H-elongata_contig81711.15838.1 ID=prot_H-elongata_contig81711.15838.1|Name=mRNA_H-elongata_contig81711.15838.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MLSLTSQVSVHYTGKLKDGKVFDTSARRGPISFALGKGEVIRGWDYAVST
MQKGEKAIVTIGPNYGYGVEGSGPIPPNATLTFEMEVVGWDKPPLIEWYQ
WIGLLVILGILVYVFVFDDEKDILRKSLESPREL*
back to top

mRNA from alignment at H-elongata_contig81711:1172..2818-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81711.15838.1 ID=mRNA_H-elongata_contig81711.15838.1|Name=mRNA_H-elongata_contig81711.15838.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1647bp|location=Sequence derived from alignment at H-elongata_contig81711:1172..2818- (Himanthalia elongata Himel1 dioecious)
ATGTTATCCCTGACTTCCCAGGTGAGTGTCCACTACACGGGCAAGCTGAA
GGATGGCAAAGTGTTCGACACAAGCGCTCGTCGAGGTAAGGTTTACCCTC
CACTACCTCAAGAACAACGCACTGCCACAACCTGAGACACTCGTAACGCG
TTATTACATACTCGCCAGGATAACTGTTTTAAGGAAGCGGCCATTACCCT
AATGTGGCATCTCCCTTCTATACTACCCCGTCTTTCCAGTAAAAGACAAT
GTGAAAAGGTGGGGGGTATCTATGTTAAACACGAGTCGTATCCGTACCGA
CATACCCTACGCATCCCAAGAATGCCGCCAATGCCGGCACGGAGCGATAT
GCTGCGTGTTCGCCGGCGAGCCTGCGTTTGACAAGGATGATCACAGCTTT
TAGCCACCATCCTTGCGTTTGCTACGCCAAACTGGACATGCCATGGGTTA
CTTTGATCCGCCGAGTAACCAATTGATGTACATTTAGCAAGCGCGGCTAT
CCTCGAAGTACCACTAAGGATTCGCGCGAACGCACAAGCGCCTCACGCAC
AACATATACAAAATATATGTGTGATACATTCAGACGATAATTTGATCATG
AATACTCCTCGTGGATTACTCTTCAGTAGCGTAAGGTTGCTCTATATAGG
GCTTTTTGACAATCCGTTGTTCAGCAGACACCCTATAAAAATCATGCGCT
TCATCCCGTTGGAGAGAGACAAGGCTCTTCTACGACTTCTCTGAGGTCAC
AGGGCACACTGCATGAATTCTCCCCAAAAAGGGGGTGGGGGGAAAAGGGG
TTACTTGCGTGTTAACTAGCGAAAATGCTAACGAAGTTACCAGGACGCAG
TTGCACAAGTGCCGTGTTTGTCGCCTTATCGAGAAAAATTTTACACATTA
GGCTTCACCAACAGCGAGGTGGCGTTCTGCAGCTGCGTGGTGCTTACCGG
AACTGTACTTACTGTACTTGATGAACCAACGATAATATTGTATAGGTCTA
CATCACCACTTCTGCAGCAGAGTTTCGAGGGTTCTATGGCAAGAGTTGTT
AGATGTTTATCAAACAGAGAGTTAGTTTGTTTTTGGTCGCAATTCATCCC
TCACACCTCCCCCCAAAAGCGACGTTGGAGAGTTTTTCAAGCAGGAAGAG
GGATATTTCGTGTTGCGTTGGTCATAAAGTCTAGCGGGGTACGGACAACC
GATCGCACTGAAAGTAGAAATGTTGGCTCCAATTGTAGTTTTTACAGAGA
GTAAAATCAGTAATATATACAGGTACTCAACAGCCTCGTCAGATTTTCCT
GCGCTATTTGCTGTTCGCTGTCTGCAGGGCCGATCTCGTTCGCCCTCGGC
AAAGGAGAAGTCATTCGAGGCTGGGATTACGCGGTATCAACGATGCAGAA
GGGAGAGAAAGCTATCGTAACCATCGGACCGAACTACGGGTACGGTGTGG
AAGGATCGGGACCGATACCTCCCAATGCAACCCTGACGTTCGAGATGGAA
GTTGTAGGGTGGGACAAGCCCCCCCTGATAGAATGGTACCAATGGATTGG
TTTGTTGGTAATCCTTGGCATACTCGTGTACGTTTTTGTTTTCGACGACG
AGAAGGATATCTTGAGAAAGAGCCTTGAAAGCCCCAGGGAACTGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig81711:1172..2818-

>mRNA_H-elongata_contig81711.15838.1 ID=mRNA_H-elongata_contig81711.15838.1|Name=mRNA_H-elongata_contig81711.15838.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig81711:1172..2818- (Himanthalia elongata Himel1 dioecious)
ATGTTATCCCTGACTTCCCAGGTGAGTGTCCACTACACGGGCAAGCTGAA
GGATGGCAAAGTGTTCGACACAAGCGCTCGTCGAGATGTTATCCCTGACT
TCCCAGGTGAGTGTCCACTACACGGGCAAGCTGAAGGATGGCAAAGTGTT
CGACACAAGCGCTCGTCGAGGGCCGATCTCGTTCGCCCTCGGCAAAGGAG
AAGTCATTCGAGGCTGGGATTACGCGGTATCAACGATGCAGAAGGGAGAG
AAAGCTATCGTAACCATCGGACCGAACTACGGGTACGGTGTGGAAGGATC
GGGACCGATACCTCCCAATGCAACCCTGACGTTCGAGATGGAAGTTGTAG
GGTGGGACAAGCCCCCCCTGATAGAATGGTACCAATGGATTGGTTTGTTG
GTAATCCTTGGCATACTCGTGTACGTTTTTGTTTTCGACGACGAGAAGGA
TATCTTGAGAAAGAGCCTTGAAAGCCCCAGGGAACTGTAAGGCCGATCTC
GTTCGCCCTCGGCAAAGGAGAAGTCATTCGAGGCTGGGATTACGCGGTAT
CAACGATGCAGAAGGGAGAGAAAGCTATCGTAACCATCGGACCGAACTAC
GGGTACGGTGTGGAAGGATCGGGACCGATACCTCCCAATGCAACCCTGAC
GTTCGAGATGGAAGTTGTAGGGTGGGACAAGCCCCCCCTGATAGAATGGT
ACCAATGGATTGGTTTGTTGGTAATCCTTGGCATACTCGTGTACGTTTTT
GTTTTCGACGACGAGAAGGATATCTTGAGAAAGAGCCTTGAAAGCCCCAG
GGAACTGTAA
back to top