mRNA_H-elongata_contig81190.15774.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81190.15774.1
Unique NamemRNA_H-elongata_contig81190.15774.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81190.15774.1 vs. uniprot
Match: A0A6H5JV15_9PHAE (BSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV15_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.040e-24
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:   10 TPLKKISEADVGRFCAFERTFDIGARTENIATLLKEDPVMTNIHTQLVPQHVPYDDFWSRYFFRAERLAE--VGGGRSFPRHDE 255
            T  + + ++   RF AF   FD+GART+++AT+LKEDPV+T IHTQLVP+H+ YDDFW+RYFFRAE++A+   GGG SFP   E
Sbjct:   40 TYTEDVPDSQSERFSAFVAKFDLGARTKDVATILKEDPVVTKIHTQLVPEHLTYDDFWTRYFFRAEKVAKGKAGGGMSFPNEGE 123
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BLAST of mRNA_H-elongata_contig81190.15774.1 vs. uniprot
Match: D8LDU7_ECTSI (BSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU7_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 8.740e-22
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:   10 TPLKKISEADVGRFCAFERTFDIGARTENIATLLKEDPVMTNIHTQLVPQHVPYDDFWSRYFFRAERLAE--VGGGRSFPRHD 252
            T  + + E+   RF AF   FD+GART+++AT+LKED V+T IHTQLVP+H+ YDDFW+RYFFRAE++A+   GGG SFP  D
Sbjct:   72 TYTEDVPESQSERFSAFVAKFDLGARTKDVATILKEDTVVTKIHTQLVPEHLTYDDFWTRYFFRAEKVAKGKAGGGMSFPNED 154
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BLAST of mRNA_H-elongata_contig81190.15774.1 vs. uniprot
Match: A0A7S3YEL0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEL0_HETAK)

HSP 1 Score: 67.8 bits (164), Expect = 9.580e-11
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   19 KKISEADVGRFCAFERTFDIGARTENIATLLKEDPVMTNIHTQLVPQHVPYDDFWSRYFFRAER 210
            ++IS+ ++  F  FE+  D+ A+T+ I+ LLK +PV+  + TQLVP  + YD FW+RY+FR  R
Sbjct:   81 EEISDQELMEFRMFEQRLDVSAKTKEISELLKSNPVVAQLQTQLVPDEISYDTFWTRYYFRVSR 144
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BLAST of mRNA_H-elongata_contig81190.15774.1 vs. uniprot
Match: A0A1W0A1Z8_9STRA (BSD domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1Z8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.750e-8
Identity = 25/65 (38.46%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    7 ITPLKKISEADVGRFCAFERTFDIGARTENIATLLKEDPVMTNIHTQLVPQHVPYDDFWSRYFFR 201
            I P+ +I   ++  + AF+  FD+  +TE +A++LKED  ++++HT +VP+ + Y +FW+RY+FR
Sbjct:   48 INPVDEIIFEELEDYKAFQDVFDLDDKTEEVASILKEDEYISDLHTAMVPEQLSYKEFWTRYYFR 112
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BLAST of mRNA_H-elongata_contig81190.15774.1 vs. uniprot
Match: A0A7S2DKP8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKP8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.120e-8
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  109 LKEDPVMTNIHTQLVPQHVPYDDFWSRYFFRAERLAEVGGGRSFPRHDEEEDEDFAW 279
            LKEDPV+ +IH +LVP+ + ++ FW+RYF+R +RL     G+    H EE+DE+F W
Sbjct:    1 LKEDPVVAHIHAELVPEKITFEVFWTRYFYREDRLLNPIHGK-IDLHVEEDDEEFGW 56
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BLAST of mRNA_H-elongata_contig81190.15774.1 vs. uniprot
Match: A0A7S1HWU2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HWU2_9EUGL)

HSP 1 Score: 59.7 bits (143), Expect = 7.570e-7
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   10 TPLKKISEADVGRFCAFERTFDIGARTENIATLLKEDPVMTNIHTQLVPQHVPYDDFWSRYFF 198
            T L  +S  D G F A++  F +   TE+I  L++E+  + +IH +LVP+H+ YD+FW+RYF+
Sbjct:   57 TYLDPLSTTDRGAFDAWKVDFQVQDFTEDIGALVEENTTVASIHHELVPEHLSYDEFWTRYFY 119
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BLAST of mRNA_H-elongata_contig81190.15774.1 vs. uniprot
Match: A0A2D4CCJ8_PYTIN (BSD domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCJ8_PYTIN)

HSP 1 Score: 58.9 bits (141), Expect = 1.600e-6
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:   13 PLKKISEADVGRFCAFERTFDIGARTENIATLLKEDPVMTNIHTQLVPQHVPYDDFWSRYFFRAERLAE 219
            P+ +I   ++  + AF   F I A T+ I+ +L+ED  +  +H Q+VP  + Y++FWSRY+FR  +  E
Sbjct:   52 PVDEILYEEIDDYKAFTEAFQIDAHTDEISRILEEDDEIRELHEQMVPVQLSYEEFWSRYYFRVHQEEE 120
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BLAST of mRNA_H-elongata_contig81190.15774.1 vs. uniprot
Match: A0A5D6XSQ5_9STRA (BSD domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XSQ5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.510e-6
Identity = 23/63 (36.51%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   13 PLKKISEADVGRFCAFERTFDIGARTENIATLLKEDPVMTNIHTQLVPQHVPYDDFWSRYFFR 201
            P+ +I   ++  F AF   F + A T+ IA++L+E   ++ +H +LVP  + +++FW RYFFR
Sbjct:   52 PVDEILYEEIDDFKAFSEAFAVDAHTDEIASVLREQDAISELHEELVPVQLSFEEFWRRYFFR 114
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BLAST of mRNA_H-elongata_contig81190.15774.1 vs. uniprot
Match: A0A2K1L1V8_PHYPA (BSD domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L1V8_PHYPA)

HSP 1 Score: 57.0 bits (136), Expect = 6.450e-6
Identity = 30/84 (35.71%), Postives = 44/84 (52.38%), Query Frame = 1 
Query:   37 DVGRFCAFERTFDIGARTENIATLLKEDPVMTNIHTQLVPQHVPYDDFWSRYFFRAERLAEVGGGR-SFPRH--DEEEDEDFAW 279
            D   F ++  TF++  R   I  +L   P M  +  Q+VP  V YD FW+RYF+R  +L ++   R    +   D EEDED +W
Sbjct:  200 DENDFASWVATFNLDDRKGEIEQILATSPFMKELQNQIVPSLVEYDTFWTRYFYRLNKLQQIENARVKLVKRAIDGEEDEDLSW 283
[Close]
BLAST of mRNA_H-elongata_contig81190.15774.1 vs. uniprot
Match: A0A7I4BZL8_PHYPA (BSD domain-containing protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4BZL8_PHYPA)

HSP 1 Score: 54.3 bits (129), Expect = 5.160e-5
Identity = 28/80 (35.00%), Postives = 43/80 (53.75%), Query Frame = 1 
Query:   49 FCAFERTFDIGARTENIATLLKEDPVMTNIHTQLVPQHVPYDDFWSRYFFRAERLAEVGGGR-SFPRH--DEEEDEDFAW 279
            F ++  TF++  R   I  +L     M  +  Q+VP  V YD FW+RYF+R  +L ++   R +  +   D EEDED +W
Sbjct:  202 FASWVATFNLEDRKGEIDEILSTSAFMKELQNQIVPSQVEYDTFWTRYFYRLNKLQQIENARVNLVKRATDGEEDEDLSW 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81190.15774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JV15_9PHAE1.040e-2457.14BSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDU7_ECTSI8.740e-2257.83BSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3YEL0_HETAK9.580e-1143.75Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1W0A1Z8_9STRA2.750e-838.46BSD domain-containing protein n=1 Tax=Thraustothec... [more]
A0A7S2DKP8_9STRA7.120e-847.37Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1HWU2_9EUGL7.570e-741.27Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A2D4CCJ8_PYTIN1.600e-636.23BSD domain-containing protein n=2 Tax=Pythium insi... [more]
A0A5D6XSQ5_9STRA5.510e-636.51BSD domain-containing protein n=1 Tax=Pythium bras... [more]
A0A2K1L1V8_PHYPA6.450e-635.71BSD domain-containing protein n=2 Tax=Physcomitriu... [more]
A0A7I4BZL8_PHYPA5.160e-535.00BSD domain-containing protein n=4 Tax=Physcomitriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81190contigH-elongata_contig81190:1261..2589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue5.4e-07
Seed eggNOG ortholog112098.XP_008604883.1
EggNOG free text desc.BSD domain
EggNOG OGs2C3NZ@1,2S2U5@2759
Ec32 ortholog descriptionBSD
Ec32 orthologEc-08_003390.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size687
Cds size687
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81190.15774.1prot_H-elongata_contig81190.15774.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81190 1261..2589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931218.4917374-CDS-H-elongata_contig81190:1260..14101622931218.4917374-CDS-H-elongata_contig81190:1260..1410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81190 1261..1410 +
1691679746.4394147-CDS-H-elongata_contig81190:1260..14101691679746.4394147-CDS-H-elongata_contig81190:1260..1410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81190 1261..1410 +
1622931218.5124693-CDS-H-elongata_contig81190:1785..18851622931218.5124693-CDS-H-elongata_contig81190:1785..1885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81190 1786..1885 +
1691679746.449648-CDS-H-elongata_contig81190:1785..18851691679746.449648-CDS-H-elongata_contig81190:1785..1885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81190 1786..1885 +
1622931218.5304086-CDS-H-elongata_contig81190:2152..25891622931218.5304086-CDS-H-elongata_contig81190:2152..2589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81190 2153..2589 +
1691679746.4577093-CDS-H-elongata_contig81190:2152..25891691679746.4577093-CDS-H-elongata_contig81190:2152..2589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81190 2153..2589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81190.15774.1

>prot_H-elongata_contig81190.15774.1 ID=prot_H-elongata_contig81190.15774.1|Name=mRNA_H-elongata_contig81190.15774.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
MAITPLKKISEADVGRFCAFERTFDIGARTENIATLLKEDPVMTNIHTQL
VPQHVPYDDFWSRYFFRAERLAEVGGGRSFPRHDEEEDEDFAWGEDDQDD
DGHSRKHDADVDEQASAPAAPADFPAPPAGGALGAMNLTHDDKATPSTRR
DSEDTTLVSVSDGQVGKYQSSKGLVETVAEEATGADEIARLTKALGASEA
ERASLVQNLSKGSVKVEELTKERDAALAE
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mRNA from alignment at H-elongata_contig81190:1261..2589+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81190.15774.1 ID=mRNA_H-elongata_contig81190.15774.1|Name=mRNA_H-elongata_contig81190.15774.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1329bp|location=Sequence derived from alignment at H-elongata_contig81190:1261..2589+ (Himanthalia elongata Himel1 dioecious)
ATGGCGATCACACCATTAAAGAAAATTTCCGAGGCCGATGTGGGGCGATT
TTGTGCGTTCGAGAGAACATTCGACATTGGGGCTAGGACCGAAAACATCG
CGACGCTCCTCAAGGAAGACCCAGTCATGACCAATATCCACACGCAGCTG
GTGCGCTTTTAATCGCTTCTTTTGCTCTCTCCCTCGCGATAGTCGCGCGA
AGTTGCAGTTTTGTTTTTCTGACGCTAAACGCCTCGTTTATGTTACTATG
GAGGGGTGTTCTCGCGACATCATTCGGCAGAGGATTGCTACCAGTCGTCG
TCGTCGTGGAAATATTTTCATGTCGGTTTACTTTATTCGCTTTAGTTTTC
TCCAGTGATGAGCCAAGAACCGGAGTTTGTCCAGCGGCCGATAGTCTCAC
AATAGTTGTCGCAGCAACCACGCGGTCAGTGGTGCGCGAAAGTGATAGGA
TGGATGCCAACTTCCACCGTACAAGACACTATAGCAGCTCCTGCCGATGG
TCACGATTCCCGAACCCGGCGACAGGTCCCCCAGCACGTGCCCTACGACG
ACTTTTGGTCCCGATATTTCTTCCGCGCCGAGAGGTTGGCAGAGGTCGGC
GGCGGCAGGTCGTTTCCCCGCCACGGTGAGTACTCCCCCCACACACACCA
CCCCTCTTCCTCTTCGCGCCATTCCAAATAGTAGCGTCCACGTTGTTCTG
CCTTGAGTGCTCTCCGTAGAGCCGTAAAGCTCCTGGATGTGTCGTGAGCA
GAGCGTCGGATTGCTGCCCCAATTACGCGTGCGTTGACTTGCTAGTATAG
TGCTCCATGTATGTTGGTGTTCTCTTTATAGTCGTTGCTGTGGCTGATTT
CAATTATGCTGCTATTGCTACTGCTTTATTCATCTCCAACAGACGAGGAA
GAAGACGAAGACTTCGCCTGGGGCGAGGACGACCAAGACGATGATGGCCA
CAGCCGAAAACACGATGCCGATGTCGATGAACAGGCTTCCGCTCCTGCCG
CCCCCGCCGACTTCCCCGCGCCCCCCGCCGGAGGAGCCCTTGGCGCGATG
AACCTGACCCACGATGATAAGGCCACGCCGTCGACGAGGCGTGATTCGGA
GGATACCACCTTGGTTTCTGTCTCCGATGGTCAGGTGGGAAAATACCAGT
CGTCTAAGGGGCTCGTCGAGACGGTGGCTGAAGAAGCCACGGGCGCTGAC
GAGATCGCGCGCTTGACGAAAGCCCTTGGCGCAAGCGAAGCGGAGCGCGC
ATCTCTGGTCCAAAACCTGTCGAAGGGAAGTGTAAAGGTCGAAGAACTGA
CGAAAGAGAGAGACGCAGCGCTCGCAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig81190:1261..2589+

>mRNA_H-elongata_contig81190.15774.1 ID=mRNA_H-elongata_contig81190.15774.1|Name=mRNA_H-elongata_contig81190.15774.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig81190:1261..2589+ (Himanthalia elongata Himel1 dioecious)
ATGGCGATCACACCATTAAAGAAAATTTCCGAGGCCGATGTGGGGCGATT
TTGTGCGTTCGAGAGAACATTCGACATTGGGGCTAGGACCGAAAACATCG
CGACGCTCCTCAAGGAAGACCCAGTCATGACCAATATCCACACGCAGCTG
ATGGCGATCACACCATTAAAGAAAATTTCCGAGGCCGATGTGGGGCGATT
TTGTGCGTTCGAGAGAACATTCGACATTGGGGCTAGGACCGAAAACATCG
CGACGCTCCTCAAGGAAGACCCAGTCATGACCAATATCCACACGCAGCTG
GTCCCCCAGCACGTGCCCTACGACGACTTTTGGTCCCGATATTTCTTCCG
CGCCGAGAGGTTGGCAGAGGTCGGCGGCGGCAGGTCGTTTCCCCGCCACG
GTCCCCCAGCACGTGCCCTACGACGACTTTTGGTCCCGATATTTCTTCCG
CGCCGAGAGGTTGGCAGAGGTCGGCGGCGGCAGGTCGTTTCCCCGCCACG
ACGAGGAAGAAGACGAAGACTTCGCCTGGGGCGAGGACGACCAAGACGAT
GATGGCCACAGCCGAAAACACGATGCCGATGTCGATGAACAGGCTTCCGC
TCCTGCCGCCCCCGCCGACTTCCCCGCGCCCCCCGCCGGAGGAGCCCTTG
GCGCGATGAACCTGACCCACGATGATAAGGCCACGCCGTCGACGAGGCGT
GATTCGGAGGATACCACCTTGGTTTCTGTCTCCGATGGTCAGGTGGGAAA
ATACCAGTCGTCTAAGGGGCTCGTCGAGACGGTGGCTGAAGAAGCCACGG
GCGCTGACGAGATCGCGCGCTTGACGAAAGCCCTTGGCGCAAGCGAAGCG
GAGCGCGCATCTCTGGTCCAAAACCTGTCGAAGGGAAGTGTAAAGGTCGA
AGAACTGACGAAAGAGAGAGACGCAGCGCTCGCAGAGACGAGGAAGAAGA
CGAAGACTTCGCCTGGGGCGAGGACGACCAAGACGATGATGGCCACAGCC
GAAAACACGATGCCGATGTCGATGAACAGGCTTCCGCTCCTGCCGCCCCC
GCCGACTTCCCCGCGCCCCCCGCCGGAGGAGCCCTTGGCGCGATGAACCT
GACCCACGATGATAAGGCCACGCCGTCGACGAGGCGTGATTCGGAGGATA
CCACCTTGGTTTCTGTCTCCGATGGTCAGGTGGGAAAATACCAGTCGTCT
AAGGGGCTCGTCGAGACGGTGGCTGAAGAAGCCACGGGCGCTGACGAGAT
CGCGCGCTTGACGAAAGCCCTTGGCGCAAGCGAAGCGGAGCGCGCATCTC
TGGTCCAAAACCTGTCGAAGGGAAGTGTAAAGGTCGAAGAACTGACGAAA
GAGAGAGACGCAGCGCTCGCAGAG
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