mRNA_H-elongata_contig811.15765.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig811.15765.1 vs. uniprot
Match: A0A6H5KZX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX0_9PHAE) HSP 1 Score: 346 bits (887), Expect = 1.260e-102 Identity = 190/314 (60.51%), Postives = 228/314 (72.61%), Query Frame = 1
Query: 1267 AVAPRLSSGANKSKFRGKRR-AGRSPATPGSNRSLKGPRFVNISEVADVSQTPGMRRSGRHRVAPLKFWKGDNIQYGLDEKGLPVAEGIVKGPALPAPALPRKREKNEGGQGGKKR---ARASEMISPLKPSQLAALPKGK---YMEKEEDCVVWDENTATNTRKHVIMRSKNLVNHKLTATLDRPPGKEKVGEAAQAFNVPGEVHITEWLAGKLVLPQGAIKDSEHVAYSTQIYIVAEGQPKALELAIATPNKKASLFFSPVNSNIFDPKTAQRYLLSPGDHFFVPVNNIYRLENHSKKSEAVIYWTILKSSG 2187
+V RLS G RGKR A + TPG R GPRFV+ISEVA+VS TPG+RRSGR RVAPLKFW+GDNIQYG+DEKGL VAEGIVKGPALP P+ + GG+G K+R A E +SPL PS+++ + K K MEK++ C+VWDE TA + V+M S NLV+H +TAT R PGKEK+G+AAQAF V EV I+EWL G+L LP GAIKDSEHVA STQIY+VAEGQP ALE+AIA P+KK FD KTAQR+LLSPGDHF+VPVNN+YRLENHS +++AVIYWTI+K+ G
Sbjct: 614 SVVARLSVG------RGKRSTAVATTTTPGPPRREWGPRFVDISEVAEVSHTPGVRRSGRQRVAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPALPEPSST---SRKRGGEGKKRRRPPAVKDEHMSPLSPSKVSEMRKNKKFKLMEKDQKCLVWDEETAAFKTRQVVMSSSNLVSHDVTATHQRAPGKEKIGQAAQAFLVGPEVGISEWLTGRLELPPGAIKDSEHVALSTQIYVVAEGQPDALEIAIAMPSKKTK-------RTTFDAKTAQRFLLSPGDHFYVPVNNVYRLENHSDRAKAVIYWTIIKAGG 911
BLAST of mRNA_H-elongata_contig811.15765.1 vs. uniprot
Match: D8LJZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ6_ECTSI) HSP 1 Score: 340 bits (872), Expect = 5.710e-101 Identity = 173/275 (62.91%), Postives = 210/275 (76.36%), Query Frame = 1
Query: 1372 GPRFVNISEVADVSQTPGMRRSGRHRVAPLKFWKGDNIQYGLDEKGLPVAEGIVKGPALPAPALPRKREKNEGGQGGKKRARASEMISPLKPSQLAALPKGK---YMEKEEDCVVWDENTATNTRKHVIMRSKNLVNHKLTATLDRPPGKEKVGEAAQAFNVPGEVHITEWLAGKLVLPQGAIKDSEHVAYSTQIYIVAEGQPKALELAIATPNKKASLFFSPVNSNIFDPKTAQRYLLSPGDHFFVPVNNIYRLENHSKKSEAVIYWTILKSSG 2187
G RFV+ISEVA+VS TPG+RRSGR RVAPLKFW+GDNIQYG+DEKGL VAEGIVKGPALP P+ P ++ +EG + + A E +SPL PS+++ + K K MEK++ C+VWDE TA + V+M S NLV+H +TAT R PGKEK+G+AAQAF V EV I+EWL G+L LP GAIKDSEHVA STQIY+VAEGQP ALE+AIA P+KK FD KTAQR+LLSPGDHF+VPVNN+YRLENHS +++AVIYWTI+K G
Sbjct: 546 GSRFVDISEVAEVSHTPGVRRSGRQRVAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPALPEPSSPSRKRGSEGKKRRRPPAVKDEHMSPLSPSKVSEMRKSKKFKLMEKDQKCLVWDEETAAFKTRQVVMSSSNLVSHDVTATHQRAPGKEKIGQAAQAFLVGPEVGISEWLTGRLELPPGAIKDSEHVALSTQIYVVAEGQPDALEIAIAMPSKKTK-------RTTFDAKTAQRFLLSPGDHFYVPVNNVYRLENHSDRAKAVIYWTIIKICG 813
BLAST of mRNA_H-elongata_contig811.15765.1 vs. uniprot
Match: A0A7S2FXX0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXX0_9STRA) HSP 1 Score: 160 bits (404), Expect = 1.260e-40 Identity = 101/260 (38.85%), Postives = 142/260 (54.62%), Query Frame = 1
Query: 1411 SQTPGMRRSGRHRVAPLKFWKGDNIQYGLDEKGLPVAEGIVKGPALPAPALPRKREKNEGGQGGKKRARASEMISPLKPSQLAALPKGKYMEKEEDCVVWDENTATNTRKHVIMRSKNL--VNHKLTATLDRPPGKEK-VGEAAQAFNV-PGEVHITEWLAGKLVLPQGAIKDSEHVAYSTQIYIVAEGQPKALELAIATPNKKASLFFSPVNSNIFDPKTAQRYLLSPGDHFFVPVNNIYRLENHSKKSEAVIYWTILK 2178
S + G RRS R R L++W+ + + Y E GL G LP A +R K KKR R +S P Q++ LP+ + + VW+E A ++ +I RSK + +L T DR PG+E VG AAQ F + P I W++G + LP AIKD+E V Y +Q++ VAE QP + E+AIA P + +F+P++AQRYLLSPGD FFV N+YRL+NHSKK + ++WTI+K
Sbjct: 3 SDSSGARRSKRQRYPVLEYWRNERMIYERPEDGL--------GEVLPMVAGISERSKTPAAPTRKKRPRKDISMSQPVPIQVSDLPEQYEFKDSDKGRVWNEKEAKASKMKIICRSKAMKKTERELPITADRDPGEEDLVGVAAQGFLMNPMSSAIPGWISGYVTLPPRAIKDAEGVGYCSQVFFVAECQPGSFEVAIAMPQDQQI---------VFEPESAQRYLLSPGDQFFVAPGNVYRLQNHSKKVDCKLFWTIIK 245
BLAST of mRNA_H-elongata_contig811.15765.1 vs. uniprot
Match: A0A7S2SRM5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRM5_9STRA) HSP 1 Score: 140 bits (354), Expect = 4.620e-32 Identity = 104/284 (36.62%), Postives = 142/284 (50.00%), Query Frame = 1
Query: 1390 ISEVAD--------VSQTP---GMRRSGRHRVAPLKFWKGDNIQY------GLDEKGLPVAEGIVKGPALPAPALPRKREKNEGGQGGKKRARASEMISPLKPSQLAALPKGKYMEKEEDCVVWDENTATNTRKHVIMRSKNLVNHKLTATLDRPPGKE-KVGEAAQAFNVPGE-VHITEWLAGKLVLPQGAIKDSEHVAYSTQIYIVAEGQPKALELAIATPNKKASLFFSPVNSNIFDPKTAQRYLLSPGDHFFVPVNNIYRLENHSKKSEAVIYWTILKSS 2184
+ EV+D V TP RRS R R PL +WK + Y GL E LP G+ + PA A +KR R R + + L PS+ LP+G+ +K E VW E + VI RS L +L T R + +VG AAQAF V + W++G +VLP AIKD E V S+Q++ VA+ QPK+LE+AI + + FD TAQR+LLS GD F++P NIYRLENHS+ + I+W I++S+
Sbjct: 190 VPEVSDDVSRGRRHVGVTPDDGSARRSRRVRYPPLAYWKNERYVYERRASEGLGEV-LPTVAGVSERTKTPAAAARKKRP----------RPRKIDRGNAL-PSK--DLPQGREFKKHEKAKVWSEEAQRQRKMTVIARSSQLEEGELPITAKRTKDESSRVGAAAQAFKVESAGPDLPTWISGHVVLPPHAIKDPERVGNSSQVFFVADCQPKSLEVAIGLDQDRPT---------DFDRATAQRFLLSSGDQFYIPPFNIYRLENHSEDQDCKIFWAIIQSA 450
BLAST of mRNA_H-elongata_contig811.15765.1 vs. uniprot
Match: A0A6G0X555_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X555_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.500e-26 Identity = 85/264 (32.20%), Postives = 128/264 (48.48%), Query Frame = 1
Query: 1387 NISEVADVSQTPGMRRSGRHRVAPLKFWKGDNIQYGLDEKGLPVAEGIVKGPALPAPALPRKREKNEGGQGGKKRARASEMISPLKPSQLAALPKGKYMEKEEDCVVWDENTATNTRKHVIMRSKNLVNHKLTATLDRPPGKEKVGEAAQAFNVPGEVHITEWLAGKLVLPQGAIKDSEHVAYSTQIYIVAEGQPKALELAIATPNKKASLFFSPVNSNIFDPKTAQRYLLSPGDHFFVPVNNIYRLENHSKKSEAVIYWTILK 2178
++ A S + G+RRS R R+ PL+++K + Y + G+ + + + + P KR+ +G S P L LP + +WDE T +++ +I R+K L D P G A Q FN+PG + W++G+LVLP A+K E V TQ+++V QP +LE+A P++ ++D +TAQRYLLSPGD +FVP N Y L NHSK EA + + ILK
Sbjct: 564 DVLRDASDSDSGGVRRSKRRRIKPLEWYKCERPVYERRQSGVGLILPTISHIERASTSTPVKRQHKQG-------------KSKSAPFPLNELPSEFSYLATDSGELWDELTNKSSKMRMICRNKASEIFALPGVDDYP-----CGFAGQTFNLPGGPALPTWISGRLVLPPQAVKQPESVGNCTQVFVVMSCQPGSLEVAYGHPSE-----------GVYDEETAQRYLLSPGDEYFVPPENAYFLRNHSKTVEAEVRFMILK 798
BLAST of mRNA_H-elongata_contig811.15765.1 vs. uniprot
Match: A0A7S2B2G0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2G0_9STRA) HSP 1 Score: 117 bits (293), Expect = 3.350e-26 Identity = 66/172 (38.37%), Postives = 101/172 (58.72%), Query Frame = 1
Query: 1705 VWDENTATNTRKHVIMRSKNLVNHK--LTATLDRPPGKE-KVGEAAQAF---NVPGEVHITEWLAGKLVLPQGAIKDSEHVAYSTQIYIVAEGQPKALELAIATP--------NKKASLFFSPVNSNIFDPKTAQRYLLSPGDHFFVPVNNIYRLENHSKKSEAVIYWTILK 2178
VW E + ++ R +++ + L T DR + +VG+AAQ+F ++P + I W++G + LP AIKD+E V + +Q++ VAE QP++ EL+IA P ++ + IF+P TAQR++LS GDHFF+P N+YRLENHSK +YWTI+K
Sbjct: 10 VWSEKEQGTKKMKIVNRQESMQKNTRDLPITTDRAEHEGVEVGQAAQSFLMDSIPSQ-RIPGWISGFVTLPPLAIKDAEGVGFCSQVFFVAECQPESFELSIADPASEHQVTRRQQLGAESGEIAEIIFEPATAQRFILSAGDHFFIPPGNVYRLENHSKHKTCKLYWTIIK 180
BLAST of mRNA_H-elongata_contig811.15765.1 vs. uniprot
Match: K3WQF2_GLOUD (CENP-C_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQF2_GLOUD) HSP 1 Score: 122 bits (307), Expect = 2.460e-25 Identity = 79/264 (29.92%), Postives = 130/264 (49.24%), Query Frame = 1
Query: 1387 NISEVADVSQTPGMRRSGRHRVAPLKFWKGDNIQYGLDEKGLPVAEGIVKGPALPAPALPRKREKNEGGQGGKKRARASEMISPLKPSQLAALPKGKYMEKEEDCVVWDENTATNTRKHVIMRSKNLVNHKLTATLDRPPGKEKVGEAAQAFNVPGEVHITEWLAGKLVLPQGAIKDSEHVAYSTQIYIVAEGQPKALELAIATPNKKASLFFSPVNSNIFDPKTAQRYLLSPGDHFFVPVNNIYRLENHSKKSEAVIYWTILK 2178
+I + A G+RRS R R PL ++KG++ Y E G+ + V G P K + K++ ++ +KP ++LPKG E E ++D + + +VI R+ + + +L + PG A Q+FN+ + W+ G+L LP GA K++E V + Q++ V QP A+E++ F PV FD A R+LL+PGD F+VP N Y L+N+S+K+ +++TI+K
Sbjct: 360 DILDDAGNDNASGVRRSKRKRFKPLAWYKGEHYVYERRESGVGLVIPTVAGIERVGTTTPTKTARKYT-----KKSHSNPQRKAIKPFPKSSLPKGLKYEDGEWADLYDTSAGCINKMNVICRASEIEHRELPSVDGEVPGF-----AGQSFNLRNSHPFSRWICGRLGLPPGAAKEAESVGEAVQVFYVTNCQPGAVEVS-----------FGPVTDEYFDTTKATRFLLNPGDEFYVPSRNAYYLKNYSEKATCDLHFTIMK 602
BLAST of mRNA_H-elongata_contig811.15765.1 vs. uniprot
Match: A0A835YQ32_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ32_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.240e-24 Identity = 67/167 (40.12%), Postives = 94/167 (56.29%), Query Frame = 1
Query: 1681 MEKEEDCVVWDENTATNTRKHVIMRSKNLVNHKLTATLDRPPGKEKVGEAAQAFNVPGEVH--ITEWLAGKLVLPQGAIKDSEHVAYSTQIYIVAEGQPKALELAIATPNKKASLFFSPVNSNIFDPKTAQRYLLSPGDHFFVPVNNIYRLENHSKKSEAVIYWTIL 2175
M EE C+V+D + +K +I R+ +LV L D +AA+AF+V G ++ W +G L LP +K +E V TQ+Y V +P +LELAIA + + ++ FD TAQRYLLSPGDHF+VP N+YRLENH+ ++A I W IL
Sbjct: 1 MRMEESCLVYDVDARGEEQKQIIFRNDSLVYQSLHLA-DGQAENSAPCQAARAFSVRGAAACGLSSWSSGALTLPPRGLKAAERVDDHTQLYWVTSCRPYSLELAIAKIPEGSDR-----PADAFDDATAQRYLLSPGDHFYVPPRNVYRLENHAPDADAQICWAIL 161
BLAST of mRNA_H-elongata_contig811.15765.1 vs. uniprot
Match: K0TMS8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TMS8_THAOC) HSP 1 Score: 119 bits (299), Expect = 2.150e-24 Identity = 102/320 (31.87%), Postives = 140/320 (43.75%), Query Frame = 1
Query: 1330 GRSPATPGSNRSLKGPRFVNISEVADV----SQTPG---MRRSGRHRVAPLKFWKGDNIQYGLD-EKGL--------PVAEGIVKGPALPAPALPRKREKNEGGQGGKKRARASEMISPL---------------KPSQLAALPKGKYMEKEEDCVVWDENTATNTRKHVIMRSKNLVNHKLTATLDRPPGKEKV-GEAAQAFNVPGEVH--ITEWLAGKLVLPQGAIKDSEHVAYSTQIYIVAEGQPKALELAIATPNKKASLFFSPVNSNIFDPKTAQRYLLSPGDHFFVPVNNIYRLENHSKKSEAVIYWTILKSSG 2187
G S P NR + V +S+ D + TPG +RRS R R PL FWK + + Y E GL PV G++ ALP P RK +P +L K + E VW E V+ R KL DR + KV G A+QAF+V + ++AG +V+P IKD+E V +Q++ V + QP ++E A+A PN + FDP+TAQRYLLS GD F +P N+YR+ENHSK A ++WTI+K +G
Sbjct: 292 GVSQGIPAGNRDFE---VVPVSDYRDDWDDDAATPGGSRLRRSRRARFKPLDFWKNEKLVYKPQREPGLLGEAMGDMPVVAGVMH--ALPTPYRERKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSREPFDDKSLRKKYKIRTGESGHVWSETLENTLPAKVVSRLDGRSFSKLPLCSDRKKRESKVVGFASQAFHVQTDDDDLFPGYIAGNVVMPPRGIKDAEGVGLCSQVFNVGDCQPNSVEFALADPNGQ---------DGEFDPRTAQRYLLSKGDMFQIPPGNVYRIENHSKTDRATLFWTIVKCTG 597
BLAST of mRNA_H-elongata_contig811.15765.1 vs. uniprot
Match: A0A5D6XN21_9STRA (CENP-C_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN21_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.490e-22 Identity = 80/252 (31.75%), Postives = 122/252 (48.41%), Query Frame = 1
Query: 1423 GMRRSGRHRVAPLKFWKGDNIQYGLDEKGLPVAEGIVKGPALPAPALPRKREKNEGGQGGKKRARASEMISPLKPSQLAALPKGKYMEKEEDCVVWDENTATNTRKHVIMRSKNLVNHKLTATLDRPPGKEKVGEAAQAFNVPGEVHITEWLAGKLVLPQGAIKDSEHVAYSTQIYIVAEGQPKALELAIATPNKKASLFFSPVNSNIFDPKTAQRYLLSPGDHFFVPVNNIYRLENHSKKSEAVIYWTILK 2178
G+RRS R R PL ++KG++ Y E G+ + V G P K + KRA A+ + S K + LPKG E E ++D R +VI R+ + + +L + PG A Q+FN+ + W+ G+L LP GA K++E V + Q++ V QP A+E++ F PV FD A R+LL+PGD F+VP N Y L+N+S + +++TI+K
Sbjct: 403 GVRRSKRRRFKPLAWYKGEHYVYERRESGVGLVIPTVAGIERVGTTTPTKTARTYT-----KRAGAA-LKSRAKALPRSQLPKGLRYETGEWANLYDTVAGCVNRMNVICRASEIEHRELPSVEGERPGF-----AGQSFNLRSSHPFSRWICGRLGLPPGAAKEAESVGDAVQVFYVTSCQPGAVEVS-----------FGPVTDEYFDTGNATRFLLNPGDEFYVPSRNAYYLKNYSGSTACELHFTIMK 632 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig811.15765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig811.15765.1 >prot_H-elongata_contig811.15765.1 ID=prot_H-elongata_contig811.15765.1|Name=mRNA_H-elongata_contig811.15765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=722bp MIDGTQVSKDVDGLDNIDSFWDSAHLGDSPDGRGGIPPHESLAETASTPAback to top mRNA from alignment at H-elongata_contig811:3675..12112+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig811.15765.1 ID=mRNA_H-elongata_contig811.15765.1|Name=mRNA_H-elongata_contig811.15765.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8438bp|location=Sequence derived from alignment at H-elongata_contig811:3675..12112+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig811:3675..12112+ >mRNA_H-elongata_contig811.15765.1 ID=mRNA_H-elongata_contig811.15765.1|Name=mRNA_H-elongata_contig811.15765.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4332bp|location=Sequence derived from alignment at H-elongata_contig811:3675..12112+ (Himanthalia elongata Himel1 dioecious)back to top |