mRNA_H-elongata_contig80933.15749.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80933.15749.1
Unique NamemRNA_H-elongata_contig80933.15749.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A6H5JPH2_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPH2_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 6.350e-48
Identity = 80/99 (80.81%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:    1 VHGGTGPEDPGPGGRRSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCIVTALDDK 297
            VHGGTG +DPGPGGRRSVRQ+LPY LTPT+S D PLHRPLHCHRLDK TGGLL+CAKTRPALSA+ DAFE+R VSKRY+ALV+G LEGSG IVT LD K
Sbjct:  181 VHGGTGEDDPGPGGRRSVRQALPYMLTPTKSKDRPLHRPLHCHRLDKATGGLLICAKTRPALSAIGDAFEQRLVSKRYVALVAGELEGSGAIVTPLDGK 279
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BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A836CLS8_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS8_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.300e-21
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   49 SVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCIVTALDDK 297
            S+R ++ + L P+ + D+ L RP H HRLD PTGGL+VCAKTRPAL  ++ AF++R+V KRY ALV+G LEGSG I T L  K
Sbjct:  151 SLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGK 233
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BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A0M0KBI6_9EUKA (Ribosomal large subunit pseudouridine synthase d (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0KBI6_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 1.190e-18
Identity = 52/97 (53.61%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:   13 TGPEDPGPGGRRSVRQSLPYALTPTRSG-DSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGS-GCIVTALDDK 297
            T P   G  G +S+R ++ YALT    G    L+RP  CHRLDKPT GLLVCAKT+PAL A+N AF +R+V+KRY A+V G + G  G I  ALD K
Sbjct:  120 THPPPGGATGSQSMRTAIQYALTAPPIGMPGALYRPHLCHRLDKPTSGLLVCAKTKPALLALNRAFAERRVAKRYHAIVGGAVVGEHGRIELALDGK 216
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BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A7S4BPC4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BPC4_CHRCT)

HSP 1 Score: 87.8 bits (216), Expect = 2.860e-18
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:   19 PEDPGPGGRRSVRQSLPYALTPTRSGD-SPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEG-SGCIVTALDDK 297
            P   G  GR+S+R ++ YA+ P  SG    L+RP   HRLDK T GLL+CAKT+PAL +++ AF +R+VSKRY+A+V G +EG SG I   LD K
Sbjct:  181 PPPGGAAGRQSMRTAVQYAVAPPASGTPGALYRPHLVHRLDKGTSGLLLCAKTKPALVSLSSAFAQRRVSKRYVAVVVGYVEGESGKIDAPLDGK 275
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BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: I0YKT8_COCSC (PseudoU_synth_2 domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YKT8_COCSC)

HSP 1 Score: 84.7 bits (208), Expect = 5.260e-17
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:   31 GPGGRRSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCIVTALDDK 297
            G GG + V  SL Y LTP+    S L RP H HRLD PTGGLL+ AKTRPA+ +++ AF +R+V K Y+A+V   L+G G I  ALD +
Sbjct:  146 GMGGVKDVVGSLGYLLTPSSKVGS-LWRPQHVHRLDAPTGGLLMVAKTRPAIKSLSAAFAQREVKKTYMAIVGARLDGRGSIEYALDGR 233
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BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A8J9SN91_9CHLO (Probable ribosomal large subunit pseudouridine synthase D n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SN91_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 2.050e-16
Identity = 46/89 (51.69%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:   31 GPGGRRSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCIVTALDDK 297
            G GG + V  SL Y LTP+    S L RP H HRLD PTGGLL+ AKTR A+ +++ AF +R+V K Y+A+V G L+G G I   LD K
Sbjct:  299 GMGGVKDVVGSLGYLLTPSSKVGS-LWRPQHVHRLDAPTGGLLMVAKTRAAIKSLSAAFAQREVKKTYMAIVGGRLDGRGSIEYPLDGK 386
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BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A7S2RLL2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLL2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.910e-16
Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:    1 VHGGTGPEDPGPGGR--RSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCIVTALD 291
             HG  G ED G       S++ ++ Y+L PT S D PL RP HCHRLD  T GL++ AKTRPAL  +   F +R++ K+Y A+V G L G G I   +D
Sbjct:   59 THGNRGGEDAGATASLGASLKTAILYSLQPTPSTDEPLRRPEHCHRLDAATFGLVLVAKTRPALRRLTADFAERRIRKQYRAVVHGKLIGEGVIEEPVD 157
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BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A7S3UCU8_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UCU8_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 1.030e-15
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:   40 GRRSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCI 276
            G+ +++Q LPY L P     + LHRP H HRLD PTGGLL+ AKT+ ++  M   F +RQV KRY A+V G LEG G I
Sbjct:  123 GKTTLQQLLPYLLQPAHVQGA-LHRPHHVHRLDMPTGGLLIAAKTQASIREMGILFHERQVQKRYRAVVIGCLEGEGTI 200
[Close]
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A7S4C3Z6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C3Z6_CHRCT)

HSP 1 Score: 79.7 bits (195), Expect = 2.210e-15
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:   40 GRRSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSG 252
            GR +VR  L Y+L P+++ + PL RP H HRLD PT GLLV AK+RPA+SA+++AF +RQV K Y A+V+G
Sbjct:  165 GRLNVRTMLAYSLQPSQNAE-PLWRPQHVHRLDAPTSGLLVVAKSRPAISALHEAFAQRQVRKTYRAVVAG 234
[Close]
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A6V2G5C6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2G5C6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.520e-15
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:   40 GRRSVRQSLPYALTPTRSGDSPLHR-PLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGI-LEGSGCIVTALDDKVI 303
            G  ++R +LP+AL P + G S ++R PL  HRLDKPT GLL+ AKT+PAL  +++ FE+R V K Y A+V+GI  E   C +TA +  ++
Sbjct:  302 GIMTIRHALPFALKPPKRGTSEIYRRPLAVHRLDKPTSGLLIVAKTKPALVNLSNQFEQRIVKKTYTAIVNGIPSEPLECSITAEEALIL 391
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPH2_9PHAE6.350e-4880.81PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A836CLS8_9STRA2.300e-2156.63Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A0M0KBI6_9EUKA1.190e-1853.61Ribosomal large subunit pseudouridine synthase d (... [more]
A0A7S4BPC4_CHRCT2.860e-1851.58Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
I0YKT8_COCSC5.260e-1751.69PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A8J9SN91_9CHLO2.050e-1651.69Probable ribosomal large subunit pseudouridine syn... [more]
A0A7S2RLL2_9STRA4.910e-1645.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3UCU8_9CHLO1.030e-1551.90Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A7S4C3Z6_CHRCT2.210e-1556.34Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A6V2G5C6_9STRA4.520e-1546.67Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80933contigH-elongata_contig80933:521..2071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue8.5e-40
Seed eggNOG ortholog2880.D8LBV5
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0564@1,KOG1919@2759
Ec32 ortholog descriptionPseudouridine synthase, RsuA/RluB/C/D/E/F
Ec32 orthologEc-20_003420.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931215.5538337-CDS-H-elongata_contig80933:520..7171622931215.5538337-CDS-H-elongata_contig80933:520..717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80933 521..717 +
1691679745.0800762-CDS-H-elongata_contig80933:520..7171691679745.0800762-CDS-H-elongata_contig80933:520..717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80933 521..717 +
1622931215.5691614-CDS-H-elongata_contig80933:1953..20711622931215.5691614-CDS-H-elongata_contig80933:1953..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80933 1954..2071 +
1691679745.0892391-CDS-H-elongata_contig80933:1953..20711691679745.0892391-CDS-H-elongata_contig80933:1953..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80933 1954..2071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80933.15749.1prot_H-elongata_contig80933.15749.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80933 521..2071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80933.15749.1

>prot_H-elongata_contig80933.15749.1 ID=prot_H-elongata_contig80933.15749.1|Name=mRNA_H-elongata_contig80933.15749.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
VHGGTGPEDPGPGGRRSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTG
GLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCIVTALDDKV
IFCC*
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mRNA from alignment at H-elongata_contig80933:521..2071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80933.15749.1 ID=mRNA_H-elongata_contig80933.15749.1|Name=mRNA_H-elongata_contig80933.15749.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1551bp|location=Sequence derived from alignment at H-elongata_contig80933:521..2071+ (Himanthalia elongata Himel1 dioecious)
GTCCATGGGGGCACGGGACCCGAAGATCCGGGACCCGGTGGGCGTCGAAG
CGTGCGGCAGTCTCTGCCCTACGCCCTTACCCCTACCCGGAGCGGTGATA
GTCCGCTGCACCGTCCCCTGCACTGTCATCGGCTCGACAAGCCCACGGGA
GGCTTGCTCGTGTGCGCCAAGACGCGGCCGGCCCTGAGCGCCATGAAGTA
AGCGACGTTGTGACGATATGGTGTTATTCTTGGCGTCTTTTTTTTTTTTC
TTACATTATTTTGACTAGAGGAAGGCGTATTCGAATTTAGACATCAGTAG
AGAGGGAGGGAGATGGGGGGGGGGCGTTCTCAAATTTCCATTATTATCTA
CTATTGACCATTATTGACCGCGCGTCCTCGGGAGGGAGGGAGGGAGGGAG
GGGGGTGTACTCAAATTTCCATTATTGACCATTGCGGACCACCATTGGCC
AATATTGACTATATTATTAACCACTATTGACCACACGTCCTCGGGAGAGA
GGGAGGACGGAGCCATTCGTTGTTTCTACATTATTAATCGCTGATAGCTA
ATCGTTATTTCCTATGCGGGGGGTGGGGGGGGGGGGGCGGTCTCATGGGG
GGGGGGGGATTAAAGCGGGGCAGGTATTTCCATCCTCCCCCGGAGGCTTT
TGGTTTGTCGGCGGTGTTCATACGTCGGAAGGATTTCCAACCTCGCCCGG
GAAGCTTTTGGTTTTTATTGCTGACAACATGGAGTGGAGCAAAAAAAACA
TTCACATTATTATGATTAGGGTGTCTGCGATTTCCAAATTTTGGTTCTTA
AGTCTCGGAAATATTCACCCGACAGCGCTGAACCGGAACATAAACCAAAA
ATTGCCAAATATGCAAGTCCAAATATGGGGAATTTTGGCCATCTAACCAA
CATTTGAAGTCAAATTATGATTTGGGTTTGGGCATTGTCAGCGATTGGTC
GAATCTGCCCGTTCTATCTCTCCGAGCACACACCACAGTAGTGTACTACA
AGAGTAGTAGTACAGTATATTACAAGTCTTCTCAACAGCTACTACGTGCA
ATAAACTCCATATATATATTTATATATATATCACTTGTGTCGATTTTGTG
CTCAAAGGTAGAAATGTACTCGTTCGAACCTGACGATAGTTGTGTCGGTA
CTGACGTACGGGCTCTACGGAGAAGTGAAAGTTCAGAATTGCTTGGTGCG
ATCATTTTTCAAAATCAGTGCTATTATAGTAAATTATAATCAAGTGAAAT
GGAAAATGTGGGGAGGGGGGATTTTAGTCTCCCCCCCCCATTCTGGGCAC
GCACGTTTCCACTCCATAAAGTAGCCTCAGATCGACGAAAAGCTTATTGT
TATAGTAGTATTTATTATTTATCTATCTATCTATCTATCTATATTGTTTT
GATTTTTTTTGTTAATTGTTTTTAACGAGGCAGCGACGCGTTCGAGAAGC
GGCAGGTCTCCAAGCGGTACATCGCCCTCGTCAGCGGGATATTGGAGGGG
AGCGGCTGCATAGTGACAGCCTTGGATGACAAGGTTATTTTTTGTTGTTG
A
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Coding sequence (CDS) from alignment at H-elongata_contig80933:521..2071+

>mRNA_H-elongata_contig80933.15749.1 ID=mRNA_H-elongata_contig80933.15749.1|Name=mRNA_H-elongata_contig80933.15749.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig80933:521..2071+ (Himanthalia elongata Himel1 dioecious)
GTCCATGGGGGCACGGGACCCGAAGATCCGGGACCCGGTGGGCGTCGAAG
CGTGCGGCAGTCTCTGCCCTACGCCCTTACCCCTACCCGGAGCGGTGATA
GTCCGCTGCACCGTCCCCTGCACTGTCATCGGCTCGACAAGCCCACGGGA
GGCTTGCTCGTGTGCGCCAAGACGCGGCCGGCCCTGAGCGCCATGAAGTC
CATGGGGGCACGGGACCCGAAGATCCGGGACCCGGTGGGCGTCGAAGCGT
GCGGCAGTCTCTGCCCTACGCCCTTACCCCTACCCGGAGCGGTGATAGTC
CGCTGCACCGTCCCCTGCACTGTCATCGGCTCGACAAGCCCACGGGAGGC
TTGCTCGTGTGCGCCAAGACGCGGCCGGCCCTGAGCGCCATGAACGACGC
GTTCGAGAAGCGGCAGGTCTCCAAGCGGTACATCGCCCTCGTCAGCGGGA
TATTGGAGGGGAGCGGCTGCATAGTGACAGCCTTGGATGACAAGGTTATT
TTTTGTTGTTGACGACGCGTTCGAGAAGCGGCAGGTCTCCAAGCGGTACA
TCGCCCTCGTCAGCGGGATATTGGAGGGGAGCGGCTGCATAGTGACAGCC
TTGGATGACAAGGTTATTTTTTGTTGTTGA
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