mRNA_H-elongata_contig80891.15744.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80891.15744.1
Unique NamemRNA_H-elongata_contig80891.15744.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80891.15744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80891contigH-elongata_contig80891:1100..2112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size254
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80891.15744.1prot_H-elongata_contig80891.15744.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80891 1100..2106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931215.0194094-CDS-H-elongata_contig80891:1099..12421622931215.0194094-CDS-H-elongata_contig80891:1099..1242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80891 1100..1242 -
1691679744.8957996-CDS-H-elongata_contig80891:1099..12421691679744.8957996-CDS-H-elongata_contig80891:1099..1242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80891 1100..1242 -
1622931215.0446122-CDS-H-elongata_contig80891:2003..21061622931215.0446122-CDS-H-elongata_contig80891:2003..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80891 2004..2106 -
1691679744.9038892-CDS-H-elongata_contig80891:2003..21061691679744.9038892-CDS-H-elongata_contig80891:2003..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80891 2004..2106 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931215.0680614-UTR-H-elongata_contig80891:2106..21121622931215.0680614-UTR-H-elongata_contig80891:2106..2112Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80891 2107..2112 -
1691679744.9122555-UTR-H-elongata_contig80891:2106..21121691679744.9122555-UTR-H-elongata_contig80891:2106..2112Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80891 2107..2112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80891.15744.1

>prot_H-elongata_contig80891.15744.1 ID=prot_H-elongata_contig80891.15744.1|Name=mRNA_H-elongata_contig80891.15744.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MAFQTARNLARCTTLVLGLTAALTSAQYDHLDFEDMMGGYGDYGYGGGYG
DYGYGGGYGDYGYGGGYGGYGGGYGGYGGMGD
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mRNA from alignment at H-elongata_contig80891:1100..2112-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80891.15744.1 ID=mRNA_H-elongata_contig80891.15744.1|Name=mRNA_H-elongata_contig80891.15744.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1013bp|location=Sequence derived from alignment at H-elongata_contig80891:1100..2112- (Himanthalia elongata Himel1 dioecious)
GGAACCATGGCCTTCCAGACGGCGAGAAACCTTGCTCGCTGCACGACCTT
AGTGCTGGGGTTGACGGCGGCTCTCACCAGCGCACAGTATGACCACCTAG
ACTTCGAAGGTGAGGCACCGCAGAAAAGGAAATTAATTTCCCGAGATACC
GGTGAAAGTGAGTGTGTTGTGTGTTATCATTCCATTGATTCTGGAGTTCC
TAGATAATTTCGGGCGTTATATGCGGCGGCTGCATTTCGGAGTAAAGTTG
TCGGTTGAGAAAAAGTTGAATCCCTTTACAGGCGCGTTAAGGACACATCC
CTATATTAACTCTAGTATATTGTCCAAAAAGACGCTTTGACGCATTTGTC
AAGAACCTGTCAACCGACAACTATGCTTCGGAGCGGGGACGGGAGGAGGC
GTGTTTAGCTTTTGTGATAGTAATATGATGATCGCAAAAGGTAGAAGTGT
CGTGGTCTGTGTTTCTTGGCTCTTTTGGTTATTTATTACACTTATTATTA
TTGTTTTTTTTTTGTTTGTTTGTTATTAGTATTACTATTATTAGTATTAC
TATTATTATTTTTATTATTACTATTATTATTATTATTATTATTATTATTA
TTATTATTACTATTATTATTTTTTTTATTATTACTACTGTATTATTATTA
TTATTATTATTATTATTATTACTATTACTATTATTATTACTATTATTATT
ACTATTATTATTACTATTATTATTACTAATATTATTATTATTACTATTAT
TACTATTATTATTATTATTATTACTATTATTACTATTATTACTATTATTG
ATATCGCTTTCCCTGTGGGCTTTCAGGAAAAGTGCTGAACGGATCCTCCC
CCGCCTTCCAACATTTGCAGATATGATGGGCGGGTACGGAGACTACGGTT
ATGGTGGAGGGTATGGAGACTACGGTTATGGTGGAGGGTACGGAGACTAC
GGTTATGGTGGAGGGTATGGTGGTTACGGAGGAGGATACGGGGGCTACGG
AGGCATGGGTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig80891:1100..2112-

>mRNA_H-elongata_contig80891.15744.1 ID=mRNA_H-elongata_contig80891.15744.1|Name=mRNA_H-elongata_contig80891.15744.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig80891:1100..2112- (Himanthalia elongata Himel1 dioecious)
ATGGCCTTCCAGACGGCGAGAAACCTTGCTCGCTGCACGACCTTAGTGCT
GGGGTTGACGGCGGCTCTCACCAGCGCACAGTATGACCACCTAGACTTCG
AAGATGGCCTTCCAGACGGCGAGAAACCTTGCTCGCTGCACGACCTTAGT
GCTGGGGTTGACGGCGGCTCTCACCAGCGCACAGTATGACCACCTAGACT
TCGAAGATATGATGGGCGGGTACGGAGACTACGGTTATGGTGGAGGGTAT
GGAGACTACGGTTATGGTGGAGGGTACGGAGACTACGGTTATGGTGGAGG
GTATGGTGGTTACGGAGGAGGATACGGGGGCTACGGAGGCATGGGTGACA
TATGATGGGCGGGTACGGAGACTACGGTTATGGTGGAGGGTATGGAGACT
ACGGTTATGGTGGAGGGTACGGAGACTACGGTTATGGTGGAGGGTATGGT
GGTTACGGAGGAGGATACGGGGGCTACGGAGGCATGGGTGAC
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