mRNA_H-elongata_contig8041.15694.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig8041.15694.1
Unique Name	mRNA_H-elongata_contig8041.15694.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig8041.15694.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.320e-31
Identity = 62/106 (58.49%), Postives = 73/106 (68.87%), Query Frame = 1

Query:    1 VWMDDILWWGSDEDDMLDTLDKTLTRLKKVEILVFYLKDFVADKCLFFYTRMTLCGKVYSGGQVTHDPERLCELTNMPRPRTVGELMRFLQAANWM*FFLPRMAEV 318
            VW+DD+++WG D+DD+LDTLD  L RL+   + V       A KC FF T +T CGKVYS GQV HDPERL  L  M RP T GELM+FLQA NW+   LPRMAEV
Sbjct:  908 VWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYV------AAHKCTFFETSITWCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEV 1007

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BLAST of mRNA_H-elongata_contig8041.15694.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 7.290e-28
Identity = 57/106 (53.77%), Postives = 70/106 (66.04%), Query Frame = 1

Query:    1 VWMDDILWWGSDEDDMLDTLDKTLTRLKKVEILVFYLKDFVADKCLFFYTRMTLCGKVYSGGQVTHDPERLCELTNMPRPRTVGELMRFLQAANWM*FFLPRMAEV 318
            VW+DD++WWG DE D+ + LD+ L RL+   I         A  CLFF T++  CGKVYSGGQV HDP RL  L +M RP T GELM+ LQA NW+   LPR+AEV
Sbjct:  620 VWVDDVVWWGIDETDLPNALDEILRRLEDKGIFA------AAHMCLFFDTKIKWCGKVYSGGQVAHDPARLQGLADMRRPETAGELMQVLQAVNWLRTSLPRLAEV 719

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BLAST of mRNA_H-elongata_contig8041.15694.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.520e-27
Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 1

Query:    1 VWMDDILWWGSDEDDMLDTLDKTLTRLKKVEILVFYLKDFVADKCLFFYTRMTLCGKVYSGGQVTHDPERLCELTNMPRPRTVGELMRFLQAANWM*FFLPRMAEV 318
            VW+DD +WWG DE D+L+TLD+ L RL+   I         A KC FF T++  CGKVYSGGQV  DPERL  LT+M RP T G+LM+FLQA  W+   L R+AEV
Sbjct:  561 VWVDDDIWWGIDETDLLNTLDEILWRLQDNGIFA------AAHKCPFFDTKIRWCGKVYSGGQVASDPERLQGLTDMRRPETAGKLMQFLQAVKWLRTSLSRLAEV 660

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BLAST of mRNA_H-elongata_contig8041.15694.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.740e-25
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1

Query:    1 VWMDDILWWGSDEDDMLDTLDKTLTRLKKVEILVFYLKDFVADKCLFFYTRMTLCGKVYSGGQVTHDPERLCELTNMPRPRTVGELMRFLQAANWM*FFLPRMAEV 318
            VW+DDI++WG  E+D+L+TLD  L R +   + V       A KC F+ T +  CGKVYS G + HD +RL  L N+ RP T GELM+FLQA NW+   LPRM+E+
Sbjct:  810 VWVDDIVYWGETEEDLLNTLDLILARFEHHGLFV------AAHKCTFYTTSVKWCGKVYSKGVIEHDRDRLSGLANLRRPETAGELMQFLQAVNWLRTSLPRMSEI 909

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BLAST of mRNA_H-elongata_contig8041.15694.1 vs. uniprot
Match: A0A3B3IB43_ORYLA (Ribonuclease H n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3B3IB43_ORYLA)

HSP 1 Score: 68.9 bits (167), Expect = 2.180e-11
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 1

Query:    7 MDDILWWGSDEDDMLDTLDKTLTRLKKVEILVFYLKDFVADKCLFFYTRMTLCGKVYSGGQVTHDPERLCELTNMPRPRTVGELMRFLQAANWM*FFLPRMAE 315
            MDD+L WG+ +++  + L + L+RL++  + +        DKC F  +R+   G++  G  V+ DPE++  +T M  P  V E+ RFL  AN +  FLP +AE
Sbjct:  578 MDDVLIWGTTQEEHDERLRRALSRLQEAGVTL-------NDKCEFSKSRIKFLGQIIEGSGVSPDPEKVKAITGMQEPTNVSEVRRFLGMANHLGKFLPHLAE 673

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BLAST of mRNA_H-elongata_contig8041.15694.1 vs. uniprot
Match: A0A6A3L091_9STRA (RNA-directed DNA polymerase n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L091_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.660e-11
Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 1

Query:    1 VWMDDILWWGSDEDDMLDTLDKTLTRLKKVEILVFYLKDFVADKCLFFYTRMTLCGKVYSGGQVTHDPERLCELTNMPRPRTVGELMRFLQAANWM 288
            +W+DDIL + S  D+ L    +    +K   + +         KC+ F  ++  CGK+ SG  + HDPERL  L N+P P TV  L +FL A NW+
Sbjct:  518 LWIDDILLFASSMDEFLRVFREFFELIKDHGLKL------SVTKCVLFQPQVLWCGKMVSGTDIQHDPERLSALANLPPPPTVAALQQFLCAVNWV 607

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BLAST of mRNA_H-elongata_contig8041.15694.1 vs. uniprot
Match: UPI00165B1E81 (uncharacterized protein K02A2.6-like n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165B1E81)

HSP 1 Score: 65.5 bits (158), Expect = 3.650e-10
Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 1

Query:    7 MDDILWWGSDEDDMLDTLDKTLTRLKKVEILVFYLKDFVADKCLFFYTRMTLCGKVYSGGQVTHDPERLCELTNMPRPRTVGELMRFLQAANWM*FFLPRMAE 315
            MDD+L WGS++D+  + L + L RL+   + +        DKC F  +++   G+V     V+ DPE++  +  M  P  + E+ RFL  AN +  FLP +AE
Sbjct:  582 MDDVLIWGSNQDEHDERLRRALDRLRNAGVTL-------NDKCEFSMSKIKFLGQVIEANGVSPDPEKVSAVRAMKEPSDISEVRRFLGMANHLGKFLPHLAE 677

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BLAST of mRNA_H-elongata_contig8041.15694.1 vs. uniprot
Match: A0A3B5PQ07_XIPMA (Ribonuclease H n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=A0A3B5PQ07_XIPMA)

HSP 1 Score: 63.2 bits (152), Expect = 2.340e-9
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 1

Query:    7 MDDILWWGSDEDDMLDTLDKTLTRLKKVEILVFYLKDFVADKCLFFYTRMTLCGKVYSGGQVTHDPERLCELTNMPRPRTVGELMRFLQAANWM*FFLPRMAE 315
            MDD+L WG+ + +  + L  TL RL++ ++ +        DKC F   R+   G+V     V+ DP+++  +  M  PR + E+ RFL   N +  FLP +AE
Sbjct:  377 MDDVLIWGTTQQEHDERLRTTLFRLQEAKVTL-------NDKCEFSKRRIKFLGQVIDASGVSPDPDKVSAIRAMEEPRNISEVRRFLGMVNHLGKFLPHLAE 472

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BLAST of mRNA_H-elongata_contig8041.15694.1 vs. uniprot
Match: A0A3Q3A0B9_KRYMA (Ribonuclease H n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3A0B9_KRYMA)

HSP 1 Score: 62.0 bits (149), Expect = 5.790e-9
Identity = 33/103 (32.04%), Postives = 54/103 (52.43%), Query Frame = 1

Query:    7 MDDILWWGSDEDDMLDTLDKTLTRLKKVEILVFYLKDFVADKCLFFYTRMTLCGKVYSGGQVTHDPERLCELTNMPRPRTVGELMRFLQAANWM*FFLPRMAE 315
            MDD+L WG+ + +  + L K L RL++  + +        DKC F   R+   G++     V+ DP+++  +  M  PR + E+ RFL   N +  FLP +AE
Sbjct:  535 MDDVLIWGTTQQEHDERLRKALFRLQEANVTL-------NDKCEFSKRRIKFLGQIIDASGVSPDPDKVNAIRAMEEPRNISEVRRFLGMVNHLGKFLPHLAE 630

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BLAST of mRNA_H-elongata_contig8041.15694.1 vs. uniprot
Match: A0A3Q3APK0_KRYMA (Ribonuclease H n=3 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3APK0_KRYMA)

HSP 1 Score: 62.0 bits (149), Expect = 5.840e-9
Identity = 33/103 (32.04%), Postives = 54/103 (52.43%), Query Frame = 1

Query:    7 MDDILWWGSDEDDMLDTLDKTLTRLKKVEILVFYLKDFVADKCLFFYTRMTLCGKVYSGGQVTHDPERLCELTNMPRPRTVGELMRFLQAANWM*FFLPRMAE 315
            MDD+L WG+ + +  + L K L RL++  + +        DKC F   R+   G++     V+ DP+++  +  M  PR + E+ RFL   N +  FLP +AE
Sbjct:  353 MDDVLIWGTTQQEHDERLRKALFRLQEANVTL-------NDKCEFSKRRIKFLGQIIDASGVSPDPDKVNAIRAMEEPRNISEVRRFLGMVNHLGKFLPHLAE 448

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig8041.15694.1 vs. uniprot

BLAST of mRNA_H-elongata_contig8041.15694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K5A5_9PHAE	4.320e-31	58.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K9E0_9PHAE	7.290e-28	53.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L028_9PHAE	3.520e-27	54.72	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L7F6_9PHAE	3.740e-25	49.06	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A3B3IB43_ORYLA	2.180e-11	34.95	Ribonuclease H n=1 Tax=Oryzias latipes TaxID=8090 ...	[more]
A0A6A3L091_9STRA	5.660e-11	36.46	RNA-directed DNA polymerase n=6 Tax=Phytophthora T...	[more]
UPI00165B1E81	3.650e-10	33.98	uncharacterized protein K02A2.6-like n=1 Tax=Fundu...	[more]
A0A3B5PQ07_XIPMA	2.340e-9	33.01	Ribonuclease H n=1 Tax=Xiphophorus maculatus TaxID...	[more]
A0A3Q3A0B9_KRYMA	5.790e-9	32.04	Ribonuclease H n=1 Tax=Kryptolebias marmoratus Tax...	[more]
A0A3Q3APK0_KRYMA	5.840e-9	32.04	Ribonuclease H n=3 Tax=Kryptolebias marmoratus Tax...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig8041	contig	H-elongata_contig8041:8862..9180 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	73.6
Seed ortholog evalue	5.7e-11
Seed eggNOG ortholog	164328.Phyra85588
EggNOG free text desc.	transposition, RNA-mediated
EggNOG OGs	3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.	L
Best tax level	Peronosporales
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	319
Cds size	285
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig8041.15694.1	prot_H-elongata_contig8041.15694.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig8041 8868..9152 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931210.0067685-UTR-H-elongata_contig8041:8861..8867	1622931210.0067685-UTR-H-elongata_contig8041:8861..8867	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig8041 8862..8867 +
1691679742.84121-UTR-H-elongata_contig8041:8861..8867	1691679742.84121-UTR-H-elongata_contig8041:8861..8867	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig8041 8862..8867 +
1622931210.0451894-UTR-H-elongata_contig8041:9152..9180	1622931210.0451894-UTR-H-elongata_contig8041:9152..9180	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig8041 9153..9180 +
1691679742.8736439-UTR-H-elongata_contig8041:9152..9180	1691679742.8736439-UTR-H-elongata_contig8041:9152..9180	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig8041 9153..9180 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931210.0278397-CDS-H-elongata_contig8041:8867..9152	1622931210.0278397-CDS-H-elongata_contig8041:8867..9152	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig8041 8868..9152 +
1691679742.8554366-CDS-H-elongata_contig8041:8867..9152	1691679742.8554366-CDS-H-elongata_contig8041:8867..9152	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig8041 8868..9152 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig8041:8862..9180+
coding sequence from alignment at H-elongata_contig8041:8862..9180+

protein sequence of mRNA_H-elongata_contig8041.15694.1

>prot_H-elongata_contig8041.15694.1 ID=prot_H-elongata_contig8041.15694.1|Name=mRNA_H-elongata_contig8041.15694.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MDDILWWGSDEDDMLDTLDKTLTRLKKVEILVFYLKDFVADKCLFFYTRM
TLCGKVYSGGQVTHDPERLCELTNMPRPRTVGELMRFLQAANWM*

mRNA from alignment at H-elongata_contig8041:8862..9180+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig8041.15694.1 ID=mRNA_H-elongata_contig8041.15694.1|Name=mRNA_H-elongata_contig8041.15694.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=319bp|location=Sequence derived from alignment at H-elongata_contig8041:8862..9180+ (Himanthalia elongata Himel1 dioecious)
GTATGGATGGATGATATTTTGTGGTGGGGCAGTGATGAGGATGATATGTT
AGATACTTTGGATAAGACATTGACTCGTCTAAAGAAAGTAGAAATACTTG
TGTTTTATTTAAAAGACTTTGTTGCGGACAAGTGTTTGTTTTTTTATACC
CGGATGACTTTGTGTGGCAAGGTTTATTCTGGTGGACAGGTGACGCATGA
TCCGGAGCGATTATGCGAGTTGACAAACATGCCACGCCCGCGGACGGTGG
GGGAGCTAATGCGATTTCTGCAAGCGGCTAACTGGATGTGATTTTTTTTA
CCGCGCATGGCTGAAGTGG

Coding sequence (CDS) from alignment at H-elongata_contig8041:8862..9180+

>mRNA_H-elongata_contig8041.15694.1 ID=mRNA_H-elongata_contig8041.15694.1|Name=mRNA_H-elongata_contig8041.15694.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig8041:8862..9180+ (Himanthalia elongata Himel1 dioecious)
ATGGATGATATTTTGTGGTGGGGCAGTGATGAGGATGATATGTTAGATAC
TTTGGATAAGACATTGACTCGTCTAAAGAAAGTAGAAATACTTGTGTTTT
ATTTAAAAGACTTTGTTGCGGACAAGTGTTTGTTTTTTTATACCCGGATG
ACTTTGTGTGGCAAGGTTTATTCTGGTGGACAGGTGACGCATGATCCGGA
GCGATTATGCGAGTTGACAAACATGCCACGCCCGCGGACGGTGGGGGAGC
TAATGCGATTTCTGCAAGCGGCTAACTGGATGTGAATGGATGATATTTTG
TGGTGGGGCAGTGATGAGGATGATATGTTAGATACTTTGGATAAGACATT
GACTCGTCTAAAGAAAGTAGAAATACTTGTGTTTTATTTAAAAGACTTTG
TTGCGGACAAGTGTTTGTTTTTTTATACCCGGATGACTTTGTGTGGCAAG
GTTTATTCTGGTGGACAGGTGACGCATGATCCGGAGCGATTATGCGAGTT
GACAAACATGCCACGCCCGCGGACGGTGGGGGAGCTAATGCGATTTCTGC
AAGCGGCTAACTGGATGTGA