prot_H-elongata_contig80241.15677.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80241.15677.1
Unique Nameprot_H-elongata_contig80241.15677.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length162
Homology
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5KFJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ3_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.440e-43
Identity = 79/159 (49.69%), Postives = 104/159 (65.41%), Query Frame = 0
Query:    2 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFSG-QNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGRQW 159
            P + A V  S Y E W  AMR E +GH  TGTFS     P G   +++KW F++K+++DG I K KARLV RGF K   VDYF + +  PS +SIK+ +A+A +    L + DV QAF  A LD DVF++LP GCG +S  VVK +RA+YG+KQ+GRQW
Sbjct:  118 PMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQW 276          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.010e-42
Identity = 80/157 (50.96%), Postives = 109/157 (69.43%), Query Frame = 0
Query:    2 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 157
            P S+ + + SK+AEVW  AM AE EG  + GTFS    +P G NVI A+W F +K+D  G I KAKARLV +GF +KH +DY  TF+ T + +SI++ +A+A + +  L +LD+ QAFV+  LD  VFMKLP GCG  SG VV+L+++LYG+KQA R
Sbjct:  167 PDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASR 323          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 5.260e-42
Identity = 77/157 (49.04%), Postives = 111/157 (70.70%), Query Frame = 0
Query:    2 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 157
            P S+ + + SKYA++W  AM AE+EG  + GTF+    +P G NVI A+W F +K+D  G I KAKARLV +GF +K+ VDY ETF+ T + +S ++ +A+A + +  L + D+ QAFV++ LD +VFMKLP GCG  SG VV+L+++LYG+KQA R
Sbjct:  715 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASR 871          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 5.350e-42
Identity = 79/157 (50.32%), Postives = 111/157 (70.70%), Query Frame = 0
Query:    2 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 157
            P S+ + + SK+A +W  AM AE+EG  + GTF+    IP G NVI A+W F +K+D  G I KAKARLV +GF +K+ VDY ETF+ T + +SI++ +A+A + D  L + D+ QAFV++ LD +VFMKLP GCG  SG VV+L+++LYG+KQA R
Sbjct:  780 PGSYQEARQSKHAAIWDGAMSAEVEGLIRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASR 936          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.220e-41
Identity = 78/157 (49.68%), Postives = 110/157 (70.06%), Query Frame = 0
Query:    2 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 157
            P S+ +   SK+A +W  AM AE+EG  + GTF+    IP G NVI A+W F +K+D  G I KAKARLV +GF +KH VDY ETF+ T + +SI++ +A+A + +  L +LD+ QAFV++ LD +VFMKLP GC   SG +V+L+++LYG+KQA R
Sbjct:  418 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASR 574          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.280e-41
Identity = 78/157 (49.68%), Postives = 110/157 (70.06%), Query Frame = 0
Query:    2 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 157
            P S+ +   SK+A +W  AM AE+EG  + GTF+    IP G NVI A+W F +K+D  G I KAKARLV +GF +KH VDY ETF+ T + +SI++ +A+A + +  L +LD+ QAFV++ LD +VFMKLP GC   SG +V+L+++LYG+KQA R
Sbjct:  482 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASR 638          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.280e-41
Identity = 78/157 (49.68%), Postives = 110/157 (70.06%), Query Frame = 0
Query:    2 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 157
            P S+ +   SK+A +W  AM AE+EG  + GTF+    IP G NVI A+W F +K+D  G I KAKARLV +GF +KH VDY ETF+ T + +SI++ +A+A + +  L +LD+ QAFV++ LD +VFMKLP GC   SG +V+L+++LYG+KQA R
Sbjct:  626 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASR 782          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 3.220e-41
Identity = 76/157 (48.41%), Postives = 110/157 (70.06%), Query Frame = 0
Query:    2 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 157
            P S+ + + SKYA++W  AM AE+EG  + GTF+    +P   NVI A+W F +K+D  G I KAKARLV +GF +K+ VDY ETF+ T + +S ++ +A+A + +  L + D+ QAFV++ LD +VFMKLP GCG  SG VV+L+++LYG+KQA R
Sbjct:  448 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASR 604          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.240e-40
Identity = 76/157 (48.41%), Postives = 108/157 (68.79%), Query Frame = 0
Query:    2 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 157
            P S+ +   SK+A +W  AM AE+EG  + GTF+    IP G NVI A+W F +K+D  G I KAKARLV +GF +KH VDY ETF+ T + +SI++ +A+A + +  L +LD+ QAF ++ LD +V MKLP GC   SG +V+L+++LYG+KQA R
Sbjct:  213 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASR 369          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 3.090e-40
Identity = 66/156 (42.31%), Postives = 104/156 (66.67%), Query Frame = 0
Query:    4 SWADVKISKYAEVWRSAMRAELEGHDQTGTFSG-QNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGRQ 158
            ++ DV  SKY   W +AM+ E++ HD+TGTF+  + +P G   I +KW FS+K++  G I   KAR+V RGF +   +D+  + +A+PS +SIK  +A+A +    L + DV QA++ A L  +++++ P GCG  SG VVK++RALYG+KQ+GR+
Sbjct:    2 TYKDVMCSKYKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKNEIYLRFPEGCGSMSGKVVKVERALYGLKQSGRE 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFJ3_9PHAE3.440e-4349.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPV1_9PHAE2.010e-4250.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRL9_9PHAE5.260e-4249.04Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JB16_9PHAE5.350e-4250.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LDZ0_9PHAE1.220e-4149.68CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE1.280e-4149.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE1.280e-4149.68CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KKK1_9PHAE3.220e-4148.41Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JV80_9PHAE2.240e-4048.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LAZ3_9PHAE3.090e-4042.31Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 38..160
e-value: 6.4E-26
score: 91.5
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 12..160
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 12..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80241contigH-elongata_contig80241:2411..2896 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80241.15677.1mRNA_H-elongata_contig80241.15677.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80241 2411..2896 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80241.15677.1 ID=prot_H-elongata_contig80241.15677.1|Name=mRNA_H-elongata_contig80241.15677.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
APKSWADVKISKYAEVWRSAMRAELEGHDQTGTFSGQNIPAGINVITAKW
GFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMA
IAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALY
GVKQAGRQWSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like