mRNA_H-elongata_contig79663.15620.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A6H5KFM7_9PHAE (RING-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFM7_9PHAE) HSP 1 Score: 244 bits (623), Expect = 6.830e-76 Identity = 116/141 (82.27%), Postives = 125/141 (88.65%), Query Frame = 1
Query: 1 AGCIYAMPISRCPYCDQDFGSDDGLFILPVEPYSAGMLFGDDKLRTREEHHQSRTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCTDRPTGEEHIAKHRDAQKRLSDLEEV 423
A CIY+MPI RCP CD DFG+DDGLFILPVEPYSA F +D+ + + HQSRTGRWHSYETMYAQRIVADF+AGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRC RP GEEHIAKHR+AQKRLSDLEE+
Sbjct: 100 ARCIYSMPIVRCPVCDMDFGNDDGLFILPVEPYSATNFFEEDERKGGDREHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCPGRPMGEEHIAKHREAQKRLSDLEEM 240
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: D8LER0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER0_ECTSI) HSP 1 Score: 248 bits (633), Expect = 1.910e-75 Identity = 118/141 (83.69%), Postives = 127/141 (90.07%), Query Frame = 1
Query: 1 AGCIYAMPISRCPYCDQDFGSDDGLFILPVEPYSAGMLFGDDKLRTREEHHQSRTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCTDRPTGEEHIAKHRDAQKRLSDLEEV 423
A CIY+MPI RCP CD DFG+DDGLFILPVEPYSA LF +D+ + R+ HQSRTGRWHSYETMYAQRIVADF+AGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRC RP GEEHIAKHR+AQKRLSDLEE+
Sbjct: 100 ARCIYSMPIVRCPVCDMDFGNDDGLFILPVEPYSATNLFEEDERKGRDAEHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCPGRPMGEEHIAKHREAQKRLSDLEEM 240
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: D8LLI7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLI7_ECTSI) HSP 1 Score: 195 bits (496), Expect = 3.690e-59 Identity = 105/149 (70.47%), Postives = 117/149 (78.52%), Query Frame = 1
Query: 1 AGCIYAMPISRCPYCDQDFGS--DDGLFILPVEPYS-AGMLFG----DDKLRTRE-EHHQSRTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCTDRPTGEEHIAKHRDAQKRLSDLEEV 423
A CIYAMPI+RCP CDQ F + D GL ILPVEP+S AG G D + RE Q+RTGRWHS+ETMYAQRIVADF+AGT+PL EGTKLGN LCNILNCSPSRLSKKLKIGKK FQ+ DRP EHIA+HR+AQKRLSDLEE+
Sbjct: 55 ARCIYAMPITRCPVCDQAFPNTNDGGLLILPVEPFSDAGGATGESEDDSRTGAREGAETQTRTGRWHSFETMYAQRIVADFDAGTLPLCEGTKLGNLLCNILNCSPSRLSKKLKIGKKCFQQREDRPMTPEHIARHREAQKRLSDLEEM 203
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A836CDJ8_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDJ8_9STRA) HSP 1 Score: 137 bits (344), Expect = 3.140e-37 Identity = 68/141 (48.23%), Postives = 89/141 (63.12%), Query Frame = 1
Query: 1 AGCIYAMPISRCPYCDQDFGSDDGLFILPVEPYSAGMLFGDDKLRTREEHHQSRTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCTDRPTGEEHIAKHRDAQKRLSDLEEV 423
A CIY +P+S CP C D +GL +LPVEP++ D + RTGRWH YET YAQ ++ DFEAGT+P+ EGTKL LC +LNC+ +RLSKKLKIGK+++ R E IA H Q+R+S+LEE+
Sbjct: 38 ARCIYQLPLSECPVCRADMTQSEGLQVLPVEPHNNEPAENADT--------ELRTGRWHHYETQYAQHLMEDFEAGTLPIGEGTKLATLLCRLLNCNQTRLSKKLKIGKRFYAHGPTRIRTPEAIAAHSVRQRRISELEEM 170
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A835ZCD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCD8_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.010e-25 Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 1
Query: 160 RTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCTDRPTGEEHIAKHRDAQKRLSDLEEV 423
RTGRWHSYET+YAQ ++ DFEAGT+P+ EGTKL + LC +LNC+ +RLSKKLKIGK+++ R E IA HR Q+R+S+LEE+
Sbjct: 68 RTGRWHSYETLYAQHVIDDFEAGTLPIGEGTKLASLLCRLLNCNQTRLSKKLKIGKRFYAHAPAREPTLEAIAAHRVRQRRVSELEEM 155
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A836CP88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP88_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.920e-10 Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1
Query: 160 RTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK----IGKKYFQR 342
R G+W E YA+R++A+F+AG +PL++GT L FL +LNC P R+SKK IGK+ F+R
Sbjct: 5 RRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRR 69
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A7S4J6Z5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J6Z5_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.690e-9 Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 160 RTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK----IGKKYFQRCT 348
R G+W E YA R++ +F+AG +PL++GT L FL +LNC P R+SKK IGK+ F+R T
Sbjct: 40 RRGKWTPEEESYANRLILEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRT 106
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A1E7FJB7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJB7_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 2.180e-9 Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 1
Query: 154 QSRTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK----IGKKYFQRCT---DRPTGEEHIAKHRDAQKRLSDLE 417
Q R G+W E YA R++ +F+AG +PL++GT L FL +LNC P R+SKK IGK+ F+R T +R T E+ I K R LSDLE
Sbjct: 46 QLRRGKWTPEEEAYANRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRTADLNRLTPEQ-IQKSR---AELSDLE 136
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A448Z703_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z703_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.910e-9 Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 154 QSRTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK----IGKKYFQRCT 348
Q R G+W E YA R++ +F+AG +PL++GT L FL +LNC P R+SKK IGK+ F+R T
Sbjct: 101 QLRRGKWTPEEEAYANRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRT 169
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A7S2NX07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NX07_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 2.990e-9 Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 160 RTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK----IGKKYFQRCT 348
R G+W E YA R++ +F+AG +PL++GT L FL +LNC P R+SKK IGK+ F+R T
Sbjct: 162 RRGKWTPEEEAYANRLILEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRT 228 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig79663.15620.1 >prot_H-elongata_contig79663.15620.1 ID=prot_H-elongata_contig79663.15620.1|Name=mRNA_H-elongata_contig79663.15620.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp MPISRCPYCDQDFGSDDGLFILPVEPYSAGMLFGDDKLRTREEHHQSRTGback to top mRNA from alignment at H-elongata_contig79663:39..1106- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig79663.15620.1 ID=mRNA_H-elongata_contig79663.15620.1|Name=mRNA_H-elongata_contig79663.15620.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1068bp|location=Sequence derived from alignment at H-elongata_contig79663:39..1106- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig79663:39..1106- >mRNA_H-elongata_contig79663.15620.1 ID=mRNA_H-elongata_contig79663.15620.1|Name=mRNA_H-elongata_contig79663.15620.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig79663:39..1106- (Himanthalia elongata Himel1 dioecious)back to top |