mRNA_H-elongata_contig79628.15615.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79628.15615.1
Unique NamemRNA_H-elongata_contig79628.15615.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 350 bits (898), Expect = 1.230e-113
Identity = 184/256 (71.88%), Postives = 199/256 (77.73%), Query Frame = 1
Query:   25 SEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRLLQANSLGPRRSGGSSPTTGRGGSSGDGYLGSTIGSGSGGAEVAAAIEDDDDSCIVCFERKVDCTLVPCGHHCCCFTCAAQFEQCPVCRADVTQKIRTISV 792
            SEKKVRVC+ CY AGE+FRKA LSGSEEGAMAA+STGCVNLRVPYTIYHNELPVHCAA+GGNLNILAWLV+DRCCPLFLDR KK+ALGD RRLSVMGAAAA+GH+QIMRYLAFTQGCKVTEIRDMG+LWR+LEKCLY+GA+V   V       SR+   NS  P  S                             EVAA + DDD+ CIVCFERKVDCTLVPCGHHCCC TCAAQFEQCPVCRADV QKIR ISV
Sbjct:  429 SEKKVRVCSTCYVAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAASGHVQIMRYLAFTQGCKVTEIRDMGSLWRALEKCLYDGANV---VPETGGHRSRISN-NSGTP--SXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVAAPLGDDDNMCIVCFERKVDCTLVPCGHHCCCLTCAAQFEQCPVCRADVEQKIRAISV 678          
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 4.800e-67
Identity = 131/265 (49.43%), Postives = 165/265 (62.26%), Query Frame = 1
Query:   10 PPLPRSEK---KVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRLLQANSLGPRRSGGSSPTTGRGGSSGDGYLGSTIGSGSGGAEVAAAIE-DDDDSCIVCFERKVDCTLVPCGHHCCCFTCAAQFEQCPVCRADVTQKIRTISV 792
            PP   SE+   ++RVC  C  A E FR ALL G  E AM+AYSTGCVNL  PYT++H ELPVHCAAAGGN+ +L+WLVE+  CP+F D  KKV + D+R L+V+GAAA  G +Q MRYL   QGC V+EI+ + TL  +L+ CL+  A      +    + SR  +AN   P   G +               G   GS S  +   AA E + D+ CIVCF+ +VDCTLVPCGHHCCC TCA++F  CPVCR  VT KI+TI V
Sbjct:  548 PPRYASERDGFRMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCPIFTDSDKKVPIKDLRSLTVLGAAAVNGQVQAMRYLVNQQGCSVSEIKHLPTLKIALDACLHGSA------KTRDAERSRY-RANGNDPDPLGSAG--------------GVCFGSRSTASLTTAAAEVETDNCCIVCFDNEVDCTLVPCGHHCCCITCASKFSLCPVCRTTVTHKIKTIPV 791          
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: D8LDN0_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN0_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 6.500e-54
Identity = 102/167 (61.08%), Postives = 116/167 (69.46%), Query Frame = 1
Query:  310 MGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRLLQANSLGP------RRSGGSSPTTGRGGSSGDGYLGSTIGSGSGGAEVAAAIEDDDDSCIVCFERKVDCTLVPCGHHCCCFTCAAQFEQCPVCRADVTQKIRTISV 792
            MGAAAA+GH+QIMRYLAFTQGCKVTEIRDMG+LWR+LEKCLY+GA+V   V       SR+  +NS G                                G+ +GGAEV+A + DDD++CIVCFERKVDCTLVPCGHHCCC TCAAQFEQCPVCRADV QKIR ISV
Sbjct:    1 MGAAAASGHVQIMRYLAFTQGCKVTEIRDMGSLWRALEKCLYDGANV---VPETGGHRSRI--SNSSGTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATGGAEVSAPLGDDDNTCIVCFERKVDCTLVPCGHHCCCLTCAAQFEQCPVCRADVEQKIRAISV 162          
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 4.720e-50
Identity = 121/337 (35.91%), Postives = 163/337 (48.37%), Query Frame = 1
Query:   25 SEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRL----LQANSLGPRRSGGSSPTTGRG---------GSSGD---GYLGSTIGSGSGGAEVAAAIEDDDD-----------------------------------------------------------------SCIVCFERKVDCTLVPCGHHCCCFTCA-AQFEQCPVCRADVTQKIRTIS 789
            +E++VRVC  CY  G++FR+ALL GS +GAM AY TGCVNLR P++    ELPVHCAAAGGN++++ WLVEDRCCP+F+D  K +   D    SVM AAA +G +++MRYL+FTQ    + +  M   WR L+ CL    D     +    D + L    +  +   P+  GGS    G           GSS D    +  +T  S  GG   ++ +E  D                                                                  +CIVCF+R V+CT +PCGHHCCC  CA + F  CPVCR  + +KI+TIS
Sbjct:  639 TERRVRVCRTCYSVGKSFRRALLRGSYQGAMEAYGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLVEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYLSFTQPSAASGM-GMAPFWRGLQACLRNDEDKHDDDRGRGRDRAPLEXGYMGTSHPEPKERGGSRDAGGDDDGGKSCYPVGSSADRSPAWRSNTPSSAVGGGNGSSGVEGSDTFLDTSFVGMRAGAGXXXXTGDRDPFQAALEMSVAEAGYSIYELTSGKGXXXXXXXXXXXXXXXXXACIVCFDRPVNCTFMPCGHHCCCMPCAESMFNLCPVCRVAIDKKIKTIS 972          
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 3.350e-49
Identity = 123/332 (37.05%), Postives = 164/332 (49.40%), Query Frame = 1
Query:   25 SEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRLLQANSLGPRRSGGSSPTTGRG---------GSSGD-------GYLGSTIG--SGSGGAE---------------------------VAAAIE-------------------------------DDDDSCIVCFERKVDCTLVPCGHHCCCFTCA-AQFEQCPVCRADVTQKIRTIS 789
            +E++VRVC  CY  G+ FR+ALL GS +GAM A+ TGCVNLR P++    ELPVHCAAAGGN++++ WL+EDRCCP+F+D  K +   D    SVM AAA +G +++MRYL FTQ    + +  M   WR L+ CL    D     +    D + L   +   P+  GGS    G           GSS D          GS +G  +GSGG E                           + AA+E                                  ++CIVCF+R V+CT VPCGHHCCC  CA ++   CPVC   + +KI+TIS
Sbjct:  569 TERRVRVCRTCYSVGKAFRRALLRGSYQGAMEAHGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLLEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYLTFTQPSAASGM-GMAPFWRGLQACLRNDEDKHDDDRGRGRDRAPLEGTSHPEPKGRGGSRDAGGGDDGGKSCYPVGSSADRNPAWRSNAPGSAVGGGNGSGGVEGCDTFLAGMRAGAXXXXXXXXXXDRDPLQAALEMSVVEAGYSIYELTTGKDGSGXXXXXXXXXMKGKNACIVCFDRPVNCTFVPCGHHCCCMPCAESKLNLCPVCGVAIDKKIKTIS 897          
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: D8LDM9_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 8.300e-47
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 1
Query:   25 SEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKK 276
            SEKKVRVC+ CY AGE+FRKA LSGSEEGAMAA+STGCVNLRVPYTIYHNELPVHCAA+GGNLNILAWLV+DRCCPLFLDR KK
Sbjct:  105 SEKKVRVCSSCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKK 188          
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: A0A836CC14_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC14_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.810e-43
Identity = 76/151 (50.33%), Postives = 96/151 (63.58%), Query Frame = 1
Query:   22 RSEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLS 474
            + E+K R+C  C    E FR ALL+G +  A AAY  GCVNLR PY+IY N LPVHCAA GG++ +LAWL+E++ CPLF D ++ +ALG+ R+ SVM  AA  GH  IMRYL      KV EI D   LWR+L+K L E +    G    S
Sbjct:   83 KQERKCRICDTCAETNEAFRAALLAGDDAAARAAYRRGCVNLRCPYSIYLNGLPVHCAAEGGSMALLAWLLEEKHCPLFKDLSRTIALGNGRKESVMAVAAQNGHTHIMRYLLHKHSVKVNEITDHKALWRALDKALRESSAQELGTSAAS 233          
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: A0A7S3YF48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF48_HETAK)

HSP 1 Score: 138 bits (347), Expect = 8.200e-35
Identity = 93/264 (35.23%), Postives = 140/264 (53.03%), Query Frame = 1
Query:   28 EKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRL-SVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRLL---QANSLGPRRSG-----GSSPTTGRGGSSGDGYLGSTIGSGSGGAEVAAAIEDDDDSCIVCFERKVDCTLVPCGHHCCCFTCAAQFEQCPVCRADVTQKIRTISV 792
            EKK RVC  C  A E+FR AL  G   G  AAY+TG VNLR PYT++  E PVHCAAAGG+L +LAWLV++R   +   ++K+  L     + S M  AA  G++++MR+L   + C V +I ++   + + EK L   +    G     P  + L+   +     P++S      GS+P +     S    +  + G    G    +    +++ C++CFE  ++  +VPCGH   C  C+ +F +CPVCR  V Q I+T  V
Sbjct:  129 EKKARVCRGCQWAMEDFRAALRRGDAPGVRAAYATGVVNLRTPYTVHGGEYPVHCAAAGGSLPLLAWLVDERGAFVRDPQSKQRPLFASDGITSCMSLAAVNGNLEMMRWLTQHE-CSVRDIVNLEHFYAATEKLLALPSTGTAGPLNSEPVAAALVDNARPPPFNPQQSVVVASVGSTPISAPSFES----ITPSAGIEQQGVTAVSGAGMEENECVICFENNINTVIVPCGHTAVCDGCSGKFTECPVCREPVQQVIKTFGV 387          
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: D7FYF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF5_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.880e-32
Identity = 70/149 (46.98%), Postives = 91/149 (61.07%), Query Frame = 1
Query:   34 KVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPD 480
            ++RVC  C  A E FR ALL G  E AM+AYSTGCVNL  PYT++H ELPVHCAAAGGN+ +L+WLVE+  C +F D  KKV + D+R L+V+GAAA                  V EI+ + TL  +L+ CL+  A     ++  S D
Sbjct:  557 RMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCSIFTDSDKKVPIRDLRSLTVLGAAAVNXXXXXXXXXXXXXXXXVLEIKHLPTLKIALDACLHGSAKTRVTLELQSGD 705          
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: A0A448ZK47_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZK47_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.970e-28
Identity = 81/256 (31.64%), Postives = 125/256 (48.83%), Query Frame = 1
Query:   22 RSEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNE-----LPVHCAAAGGNLNILAWLVEDRCCPLFLDRA--KKVALGDM-----RRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRLLQANSLGPRRSGGSSPTTGRGGSSGDGYLGSTIGSGSGGAEVAAAIEDDDDSCIVCFERKVDCTLVPCGHHCCCFTCAAQFEQCPVC 753
            + E +V++C  C      F++ALL G  E A+A Y TG +NLR P+  + ++      P+HCA  GGNL+I+ WL+ED  CP+ L R   KK A  D      +  S +  A  A H+ ++RYL   +G  V E +D+    R+LE  L     +P+ +     D       + +     GG+S  +  G  +   + GS         + +A+   D + CI+C +  +DC + PCGH  CC  C+     CPVC
Sbjct:  515 KKESQVKICKSCNFLSGAFKRALLEGDYEEAVALYGTGNINLRTPFPQFSSKKEEVMYPIHCAVEGGNLDIVQWLMEDHFCPVKLIRTGGKKAANQDFPILTSKNRSALTIAMDALHVNVLRYLVVDKGVSVYESKDLKGSLRALEAVLNA---IPSSIGEYRSDGFNHRWDDEV---FDGGTSVASSLGADAT--FSGSEF-------DGSASKRTDAEKCILCCDNTIDCVITPCGHQICCLKCSKNLSTCPVC 755          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTC5_9PHAE1.230e-11371.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTY3_9PHAE4.800e-6749.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDN0_ECTSI6.500e-5461.08Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KUU5_9PHAE4.720e-5035.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF4_ECTSI3.350e-4937.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDM9_ECTSI8.300e-4789.29FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CC14_9STRA2.810e-4350.33FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3YF48_HETAK8.200e-3535.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FYF5_ECTSI1.880e-3246.98FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A448ZK47_9STRA2.970e-2831.64Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79628contigH-elongata_contig79628:132..2848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue1.3e-44
Seed eggNOG ortholog2880.D7FYF4
KEGG koko:K15688
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0030587,GO:0032502,GO:0035556,GO:0044424,GO:0044444,GO:0044464,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051703,GO:0051704,GO:0051716,GO:0065007,GO:0090702,GO:0099120
EggNOG free text desc.negative regulation of chemokine (C-C motif) ligand 5 production
EggNOG OGsKOG1571@1,KOG1571@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionzinc finger protein
Ec32 orthologEc-19_001280.1
Exons6
Model size795
Cds size795
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79628.15615.1prot_H-elongata_contig79628.15615.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79628 132..2848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931201.045998-CDS-H-elongata_contig79628:131..2721622931201.045998-CDS-H-elongata_contig79628:131..272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79628 132..272 -
1691679739.076548-CDS-H-elongata_contig79628:131..2721691679739.076548-CDS-H-elongata_contig79628:131..272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79628 132..272 -
1622931201.0591254-CDS-H-elongata_contig79628:537..7281622931201.0591254-CDS-H-elongata_contig79628:537..728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79628 538..728 -
1691679739.0865247-CDS-H-elongata_contig79628:537..7281691679739.0865247-CDS-H-elongata_contig79628:537..728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79628 538..728 -
1622931201.0784159-CDS-H-elongata_contig79628:1199..12931622931201.0784159-CDS-H-elongata_contig79628:1199..1293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79628 1200..1293 -
1691679739.0941305-CDS-H-elongata_contig79628:1199..12931691679739.0941305-CDS-H-elongata_contig79628:1199..1293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79628 1200..1293 -
1622931201.09306-CDS-H-elongata_contig79628:1685..17781622931201.09306-CDS-H-elongata_contig79628:1685..1778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79628 1686..1778 -
1691679739.1017933-CDS-H-elongata_contig79628:1685..17781691679739.1017933-CDS-H-elongata_contig79628:1685..1778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79628 1686..1778 -
1622931201.107024-CDS-H-elongata_contig79628:2011..21101622931201.107024-CDS-H-elongata_contig79628:2011..2110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79628 2012..2110 -
1691679739.1093-CDS-H-elongata_contig79628:2011..21101691679739.1093-CDS-H-elongata_contig79628:2011..2110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79628 2012..2110 -
1622931201.1225326-CDS-H-elongata_contig79628:2671..28481622931201.1225326-CDS-H-elongata_contig79628:2671..2848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79628 2672..2848 -
1691679739.117269-CDS-H-elongata_contig79628:2671..28481691679739.117269-CDS-H-elongata_contig79628:2671..2848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79628 2672..2848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79628.15615.1

>prot_H-elongata_contig79628.15615.1 ID=prot_H-elongata_contig79628.15615.1|Name=mRNA_H-elongata_contig79628.15615.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
PPPPPLPRSEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLR
VPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRR
LSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADV
PTGVQCLSPDMSRLLQANSLGPRRSGGSSPTTGRGGSSGDGYLGSTIGSG
SGGAEVAAAIEDDDDSCIVCFERKVDCTLVPCGHHCCCFTCAAQFEQCPV
CRADVTQKIRTISV*
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mRNA from alignment at H-elongata_contig79628:132..2848-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79628.15615.1 ID=mRNA_H-elongata_contig79628.15615.1|Name=mRNA_H-elongata_contig79628.15615.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2717bp|location=Sequence derived from alignment at H-elongata_contig79628:132..2848- (Himanthalia elongata Himel1 dioecious)
CCCCCCCCCCCCCCTCTGCCAAGGAGTGAGAAGAAGGTGAGAGTTTGCAC TATTTGCTACCGTGCTGGTGAAAATTTCCGGAAGGCCCTTCTGTCCGGCT CGGAAGAGGGGGCCATGGCAGCGTACAGCACGGGGTGCGTCAACCTCCGG GTGCCCTACACTATCTACCACAACGAGGTATTTTGGCGATGATTCTACGC AGGGGATATATTTTCTATTTTCGGCTGATTTTTTTGTTAAGGGCCAGGAA GGGAACGGGATATAAAAGGCGTTTTTCTTTGCGGCAGCAGTTTATTTCTC TCCACTGTCGTAAAAATAAAATCGCGGCGTGACCACGATGATATGACCTT ACTTCGTTTGGGCTTTGAGGGGTGTTTTTGTAGATGGGACCTGAAGTAGA AATGGTTAGCGTACCACGGTACAATCGGATATCGCCAACTCACACACAAA TTCAGCAACAACAAATGAAACGTAAAATACATGTTAAGAGATGGTCGTTC TTATCCAGCAGAGTAAGGAGAGTAACGGGACTGTACGTTCTAGAACGAAG CGTTTCGCGATTCCGCGCGCGGGGGGGCCGTCCTACGCTGAAAACACTCC CCGGCATGTACGCATCGGGAATCAAGTGTGGCATCCTGCCTCCGGCAACA ATCCCCCGTCCCCCCGGTCCCTAAATCATTAGCGGTTTATTCTGACGTCA TTGGCTTCTGACTGTATTACTGTGGCGTTTCCAAACAGCTGCCTGTGCAC TGCGCGGCCGCGGGAGGAAATCTGAACATTTTGGCGTGGCTGGTGGAAGA CCGTTGCTGCCCCCTGTTCCTCGACCGGGCAAAGAAGGTTCGGGCCTCGA TGTTGGGTTGGACCAACGGAGCCGTCGTTTTTACGGAGAGCCAGTTTCCT CGGCTCGTGTAACTTAGCTGCAGTGGTTTAAGAAGAGTCGGTGATAAGGC CTTCGATTGGTTGGCTGGATGACTCGGCCAAAAAAGTGGCATTGTTAACA CCCTTCCCCGCATTTTAATTTTAAGGCGTGTGTTTTGGGTGTTGGTGTAC ACGGGCGCGCGTACCCTCAGGTGGCCTTGGGCGACATGCGAAGGCTTAGC GTCATGGGCGCAGCCGCCGCTGCAGGGCACATTCAGATCATGCGCTACTT GGCGTTCACGCAGGTAATGAAGCGTTGCCGGAAAAGGGGTCGAGCACGGA ATGTAGGGTTTTATCTCTTGATCACGCCGTTTTTGTCCCCTGACATACCG ATAAGCCAACCACGCGCGTGGGTCTGTCGCTTTTTTTGCGTATCACGTCC CGAAACGCCGTGGAACTAGCGAGGTGTGGAAGGGAACTGTCGTGAGTGCG CGCGCTGACCCCCGAAACGACAAATTCGGCGGGGCTAATCTTGCGAACGA CACTCCGCGGCATATTTTTCATTATTAATTATTAATTTCGTGTGTTACTT TGTCGTAGGTAGGTACCCCCCGGAAACAGCTCTTGCATGACCTTGCGCCG TCTCCTCGACGTTACTTCTCGCGTCCATGCGTTCGTGCACGTATTCATAA TGCAGGGATGCAAAGTGACAGAGATTAGGGACATGGGCACGCTGTGGCGC TCCCTTGAGAAGTGCTTATACGAAGGCGCTGACGTCCCCACCGGGGTGCG TTTCGGGGGGGGGGGGGGGGGGGGGGCCATTTGTCGGGGGGGAAAAAAAG GGAAAAAAAGGAATGCCCAAACCGGTGTTTTTTTTTTTTTTTTAACCAAC GCNNNNNNNNNNGCCCGTCATTGATGGGTGGTTGAGAGGCGGCCGCACCC CCCCGCCGGGGGTGGGTTTGGGGGGGGGGGGGGGGTTACCTTATCGCATG GGGATCAAAAGCGCGAAACATTGATGCCCCAGACCCGTGTATTTTTTTTC TATCAACCAAGGCCTTGTTGCTTTCATTCCCGCTCTTGGGTATAACTGAG TATCATCGCGTTGGTTCGAAGCGTGTATATGAGCGAGTAGGTGTTTTTCT GACAACTGCGGGAATCATGCGTAATCATGACGTCACGACCCTACGTCATC GATTTTCCATGTGCGCCATCTCCAATTCCTCTCGGTGCCCATATTATCCG TTTACGACCGAAAGAAAAAGAGTGCTTGTCCCCGGACATGTCCCGATTGC TGCAGGCAAACAGTCTCGGGCCGCGTCGTAGCGGGGGGAGTTCACCGACA ACCGGAAGAGGCGGTAGTAGCGGGGACGGGTACCTGGGATCGACGATCGG GAGCGGCAGTGGCGGCGCTGAGGTGGCGGCTGCCATTGAGGACGACGACG ACTCGTGCATCGTAAGTCTTTGCTGGTGTTATTCACCGCAAATGATGAGT GCTGAGCAAGTTGTTTATCGTTTATTGCCCTATTCTGTAGTAAGTCGCCT GGGGTGCGGTTTGCCGGAGCGCGTTACAAACCTTGGCCGAGGGCGGGGGG AAGAAAGAGGAAAAACTCAATTTTTGGGCCATTGACCACGCATTCTCCGG GAGGACGGAAATATCATCGTTTGTTTTTTGTGTATTTCTGACTGACGAGT GTTGCTTTTACTTTTGACCCTTGCAGGTGTGCTTCGAGCGTAAGGTGGAC TGCACCTTGGTGCCCTGCGGCCACCACTGCTGCTGCTTCACATGCGCGGC TCAGTTTGAGCAATGCCCCGTCTGTCGCGCCGACGTTACCCAGAAGATAA GAACCATCAGCGTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig79628:132..2848-

>mRNA_H-elongata_contig79628.15615.1 ID=mRNA_H-elongata_contig79628.15615.1|Name=mRNA_H-elongata_contig79628.15615.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig79628:132..2848- (Himanthalia elongata Himel1 dioecious)
CCCCCCCCCCCCCCTCTGCCAAGGAGTGAGAAGAAGGTGAGAGTTTGCAC
TATTTGCTACCGTGCTGGTGAAAATTTCCGGAAGGCCCTTCTGTCCGGCT
CGGAAGAGGGGGCCATGGCAGCGTACAGCACGGGGTGCGTCAACCTCCGG
GTGCCCTACACTATCTACCACAACGAGCCCCCCCCCCCCCCTCTGCCAAG
GAGTGAGAAGAAGGTGAGAGTTTGCACTATTTGCTACCGTGCTGGTGAAA
ATTTCCGGAAGGCCCTTCTGTCCGGCTCGGAAGAGGGGGCCATGGCAGCG
TACAGCACGGGGTGCGTCAACCTCCGGGTGCCCTACACTATCTACCACAA
CGAGCTGCCTGTGCACTGCGCGGCCGCGGGAGGAAATCTGAACATTTTGG
CGTGGCTGGTGGAAGACCGTTGCTGCCCCCTGTTCCTCGACCGGGCAAAG
AAGCTGCCTGTGCACTGCGCGGCCGCGGGAGGAAATCTGAACATTTTGGC
GTGGCTGGTGGAAGACCGTTGCTGCCCCCTGTTCCTCGACCGGGCAAAGA
AGGTGGCCTTGGGCGACATGCGAAGGCTTAGCGTCATGGGCGCAGCCGCC
GCTGCAGGGCACATTCAGATCATGCGCTACTTGGCGTTCACGCAGGTGGC
CTTGGGCGACATGCGAAGGCTTAGCGTCATGGGCGCAGCCGCCGCTGCAG
GGCACATTCAGATCATGCGCTACTTGGCGTTCACGCAGGGATGCAAAGTG
ACAGAGATTAGGGACATGGGCACGCTGTGGCGCTCCCTTGAGAAGTGCTT
ATACGAAGGCGCTGACGTCCCCACCGGGGTGCGGATGCAAAGTGACAGAG
ATTAGGGACATGGGCACGCTGTGGCGCTCCCTTGAGAAGTGCTTATACGA
AGGCGCTGACGTCCCCACCGGGGTGCAGTGCTTGTCCCCGGACATGTCCC
GATTGCTGCAGGCAAACAGTCTCGGGCCGCGTCGTAGCGGGGGGAGTTCA
CCGACAACCGGAAGAGGCGGTAGTAGCGGGGACGGGTACCTGGGATCGAC
GATCGGGAGCGGCAGTGGCGGCGCTGAGGTGGCGGCTGCCATTGAGGACG
ACGACGACTCGTGCATCAGTGCTTGTCCCCGGACATGTCCCGATTGCTGC
AGGCAAACAGTCTCGGGCCGCGTCGTAGCGGGGGGAGTTCACCGACAACC
GGAAGAGGCGGTAGTAGCGGGGACGGGTACCTGGGATCGACGATCGGGAG
CGGCAGTGGCGGCGCTGAGGTGGCGGCTGCCATTGAGGACGACGACGACT
CGTGCATCGTGTGCTTCGAGCGTAAGGTGGACTGCACCTTGGTGCCCTGC
GGCCACCACTGCTGCTGCTTCACATGCGCGGCTCAGTTTGAGCAATGCCC
CGTCTGTCGCGCCGACGTTACCCAGAAGATAAGAACCATCAGCGTTTAGG
TGTGCTTCGAGCGTAAGGTGGACTGCACCTTGGTGCCCTGCGGCCACCAC
TGCTGCTGCTTCACATGCGCGGCTCAGTTTGAGCAATGCCCCGTCTGTCG
CGCCGACGTTACCCAGAAGATAAGAACCATCAGCGTTTAG
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