mRNA_H-elongata_contig79590.15612.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79590.15612.1
Unique NamemRNA_H-elongata_contig79590.15612.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79590.15612.1 vs. uniprot
Match: D7G290_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G290_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 3.800e-53
Identity = 86/110 (78.18%), Postives = 94/110 (85.45%), Query Frame = 1 
Query:    1 IQVPTIFWFVPPTAINLWWTAAVGAAVSCAILAWGAANLPAMTLLWVLYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWISLSRFPKRLPSPLVCVWGYRWLLFRIMV 330
            ++VPT+FWF PPTA +LWW AA GAAVSC +   GAAN PAM LLW LYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPW+SLSRFP   P+  VCVWGYRWLLFRIM+
Sbjct:   35 LKVPTVFWFTPPTAEHLWWAAATGAAVSCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPTSPVCVWGYRWLLFRIML 144
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BLAST of mRNA_H-elongata_contig79590.15612.1 vs. uniprot
Match: A0A6H5L4Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y0_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.870e-52
Identity = 85/110 (77.27%), Postives = 93/110 (84.55%), Query Frame = 1 
Query:    1 IQVPTIFWFVPPTAINLWWTAAVGAAVSCAILAWGAANLPAMTLLWVLYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWISLSRFPKRLPSPLVCVWGYRWLLFRIMV 330
            ++VPT+FWF PPTA +LWW AA GA VSC +   GAAN PAM LLW LYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPW+SLSRFP   P+  VCVWGYRWLLFRIM+
Sbjct:   76 LKVPTVFWFTPPTAEHLWWAAATGAVVSCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPTSPVCVWGYRWLLFRIML 185
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BLAST of mRNA_H-elongata_contig79590.15612.1 vs. uniprot
Match: A0A8B7YM60_ACAPL (Lipase maturation factor n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YM60_ACAPL)

HSP 1 Score: 134 bits (336), Expect = 1.970e-34
Identity = 64/110 (58.18%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:   10 PTIFWFVPPTAINLWWT---AAVGAAVSCAILAWGAANLPAMTLLWVLYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWISLSRFPKRLPSPLVCVWGYRWLLFRIMV 330
            PT+ WFV       +W    A  G A+S  +L  G+AN+  M  LW+LYHSLV VGQ WYSFGWESQLLETGFLA+F+ P  SL +FP+R P+PLV +WGYRWL+FRIM+
Sbjct:  117 PTVLWFVDTEGTVDYWLDVLAYAGIALSALVLLLGSANMVVMATLWLLYHSLVGVGQKWYSFGWESQLLETGFLAIFMCPLFSLRQFPRRTPTPLVTLWGYRWLIFRIMI 226
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BLAST of mRNA_H-elongata_contig79590.15612.1 vs. uniprot
Match: A0A2G8KKP9_STIJA (Lipase maturation factor n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KKP9_STIJA)

HSP 1 Score: 133 bits (334), Expect = 3.580e-34
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = 1 
Query:   10 PTIFWFVPPTAINLWWT--AAVGAAVSCAILAWGAANLPAMTLLWVLYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWISLSRFPKRLPSPLVCVWGYRWLLFRIMV 330
            PTI WFV  + I+LW    A  G  VS  +L  GAAN+P M +LW+LYHSLV+VGQ WYSFGWESQLLETGFLA+FL P  ++ +FP++   P V +WGYRWL+FRIM+
Sbjct:  115 PTILWFVDQSEIDLWLDRIAYGGLGVSAFVLISGAANMPLMIILWLLYHSLVSVGQRWYSFGWESQLLETGFLAIFLCPVWTVRQFPRKTQPPWVAIWGYRWLIFRIML 223
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BLAST of mRNA_H-elongata_contig79590.15612.1 vs. uniprot
Match: A0A7M7LLF5_STRPU (Lipase maturation factor n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7LLF5_STRPU)

HSP 1 Score: 133 bits (334), Expect = 3.820e-34
Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:   10 PTIFWFVPPTAINLWWTAAV---GAAVSCAILAWGAANLPAMTLLWVLYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWISLSRFPKRLPSPLVCVWGYRWLLFRIMV 330
            PT+ WFV       WW  A+   G A+S  +L  G +N+  M  LWVLYHSLVN+GQ WYSFGWESQLLETGFLA+F+ P ++LSRFP+  P+P V +WGY+WLLFRIM+
Sbjct:  118 PTLLWFVDLDQDLDWWLDALAYSGLALSGTVLVLGCSNMVIMIGLWVLYHSLVNIGQKWYSFGWESQLLETGFLAVFMCPLLTLSRFPRHTPTPWVTLWGYKWLLFRIMI 227
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BLAST of mRNA_H-elongata_contig79590.15612.1 vs. uniprot
Match: UPI0018D7266A (lipase maturation factor 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7266A)

HSP 1 Score: 132 bits (332), Expect = 8.900e-34
Identity = 64/110 (58.18%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:   10 PTIFWFVPPT-AINLWWTAAV--GAAVSCAILAWGAANLPAMTLLWVLYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWISLSRFPKRLPSPLVCVWGYRWLLFRIMV 330
            PTI WFV    A++ W  A    G A+S  +L  G+AN+  M +LW+LYHSLV+VGQ WYSFGWESQLLETGFLA+F+ P +SL ++P+R P+P V +WGYRWL+FRIM+
Sbjct:  158 PTILWFVDVEGAVDYWLDALAYAGVALSGFVLVLGSANMVVMVMLWLLYHSLVSVGQRWYSFGWESQLLETGFLAIFMCPLLSLRQYPRRTPTPWVTLWGYRWLIFRIMI 267
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BLAST of mRNA_H-elongata_contig79590.15612.1 vs. uniprot
Match: UPI001BB26A20 (lipase maturation factor 1-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB26A20)

HSP 1 Score: 129 bits (324), Expect = 9.710e-33
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:   10 PTIFWFVPPTAINLWWTAAV---GAAVSCAILAWGAANLPAMTLLWVLYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWISLSRFPKRLPSPLVCVWGYRWLLFRIMV 330
            PT+ WFV       WW  A+   G  +S  +L  G +N+  M  LWVLYHSLVN+GQ WYSFGWESQLLETGFLA+F+ P ++L+RFP+  P+P V +WGY+WL+FRIM+
Sbjct:  121 PTLLWFVDLDQHLDWWLDALAYSGLILSGLVLVLGCSNMLIMMSLWVLYHSLVNIGQRWYSFGWESQLLETGFLAVFMCPLLTLTRFPRHTPTPWVTLWGYKWLIFRIMI 230
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BLAST of mRNA_H-elongata_contig79590.15612.1 vs. uniprot
Match: UPI00074FB6C1 (lipase maturation factor 1-like n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FB6C1)

HSP 1 Score: 119 bits (299), Expect = 2.650e-32
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 1 
Query:   10 PTIFWFVPPTAIN--LWWTAAVGAAVSCAILAWGAANLPAMTLLWVLYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWISLSRFPKRLPSPLVCVWGYRWLLFRIMV 330
            PT+ WF+  ++++  L   A  G A++  +L  G AN+  MT LW LY SL+NVGQ WYSFGWESQLLETGFL +FL P+ + S+ PKR P   + +WGYRWL+FRIM+
Sbjct:   46 PTLIWFLDWSSMDSILDGFALAGLAIAAFVLVTGCANMVLMTALWALYLSLINVGQIWYSFGWESQLLETGFLGIFLCPFWTFSQLPKRTPPSRIVIWGYRWLIFRIML 154
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BLAST of mRNA_H-elongata_contig79590.15612.1 vs. uniprot
Match: A0A6J0UNI6_9SAUR (Lipase maturation factor n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0UNI6_9SAUR)

HSP 1 Score: 127 bits (320), Expect = 3.540e-32
Identity = 64/109 (58.72%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:   10 PTIFWFVPPTAIN--LWWTAAVGAAVSCAILAWGAANLPAMTLLWVLYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWISLSRFPKRLPSPLVCVWGYRWLLFRIMV 330
            PT+FW VP ++++  L   A  G A+S  +L  G AN+  M LLW+LY SLVNVGQ WYSFGWESQLLETGFLA+FL P  +LS+ PKR P   + +WGYRWL+FRIM+
Sbjct:  143 PTLFWIVPRSSVDGALDAFALAGLAISLFVLVAGCANMILMALLWLLYLSLVNVGQIWYSFGWESQLLETGFLAIFLCPLWTLSQLPKRTPPSRIVIWGYRWLIFRIML 251
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BLAST of mRNA_H-elongata_contig79590.15612.1 vs. uniprot
Match: UPI000A1C3E29 (lipase maturation factor 1 n=1 Tax=Boleophthalmus pectinirostris TaxID=150288 RepID=UPI000A1C3E29)

HSP 1 Score: 127 bits (318), Expect = 6.030e-32
Identity = 65/109 (59.63%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:   10 PTIFWFVPPTAI--NLWWTAAVGAAVSCAILAWGAANLPAMTLLWVLYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWISLSRFPKRLPSPLVCVWGYRWLLFRIMV 330
            P++ WF+  T +  NL   A VG  +S  +L  GAAN+  M  LWVLYHSLVNVGQ WYSFGWESQLLETGFLA+FL P  S S+ P+R P  L+CVW YRWL+ RIM+
Sbjct:  121 PSLLWFMDWTNMDANLDALALVGMGLSGLVLLTGAANMVVMATLWVLYHSLVNVGQLWYSFGWESQLLETGFLAIFLCPLWSFSQMPRRCPPSLICVWTYRWLIVRIML 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79590.15612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G290_ECTSI3.800e-5378.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Y0_9PHAE1.870e-5277.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8B7YM60_ACAPL1.970e-3458.18Lipase maturation factor n=1 Tax=Acanthaster planc... [more]
A0A2G8KKP9_STIJA3.580e-3459.63Lipase maturation factor n=1 Tax=Stichopus japonic... [more]
A0A7M7LLF5_STRPU3.820e-3458.18Lipase maturation factor n=1 Tax=Strongylocentrotu... [more]
UPI0018D7266A8.900e-3458.18lipase maturation factor 1-like n=1 Tax=Patiria mi... [more]
UPI001BB26A209.710e-3355.45lipase maturation factor 1-like n=1 Tax=Lytechinus... [more]
UPI00074FB6C12.650e-3253.21lipase maturation factor 1-like n=1 Tax=Gekko japo... [more]
A0A6J0UNI6_9SAUR3.540e-3258.72Lipase maturation factor n=1 Tax=Pogona vitticeps ... [more]
UPI000A1C3E296.030e-3259.63lipase maturation factor 1 n=1 Tax=Boleophthalmus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79590contigH-elongata_contig79590:1827..2819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue7e-45
Seed eggNOG ortholog2880.D7G290
Preferred nameLMF1
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006807,GO:0006810,GO:0006888,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009306,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0031323,GO:0031984,GO:0032501,GO:0032940,GO:0033036,GO:0033578,GO:0034381,GO:0034382,GO:0034645,GO:0036211,GO:0042175,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046486,GO:0046903,GO:0046907,GO:0048193,GO:0050789,GO:0050790,GO:0050794,GO:0051004,GO:0051006,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051604,GO:0051641,GO:0051649,GO:0060191,GO:0060193,GO:0061365,GO:0062012,GO:0065007,GO:0065009,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071830,GO:0080090,GO:0090181,GO:0090207,GO:0097006,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein glycosylation in Golgi
EggNOG OGs28KNS@1,2QT4H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931200.573574-CDS-H-elongata_contig79590:1826..20131622931200.573574-CDS-H-elongata_contig79590:1826..2013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79590 1827..2013 +
1691679738.9038334-CDS-H-elongata_contig79590:1826..20131691679738.9038334-CDS-H-elongata_contig79590:1826..2013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79590 1827..2013 +
1622931200.5856159-CDS-H-elongata_contig79590:2676..28191622931200.5856159-CDS-H-elongata_contig79590:2676..2819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79590 2677..2819 +
1691679738.9198873-CDS-H-elongata_contig79590:2676..28191691679738.9198873-CDS-H-elongata_contig79590:2676..2819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79590 2677..2819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79590.15612.1prot_H-elongata_contig79590.15612.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79590 1827..2819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79590.15612.1

>prot_H-elongata_contig79590.15612.1 ID=prot_H-elongata_contig79590.15612.1|Name=mRNA_H-elongata_contig79590.15612.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
IQVPTIFWFVPPTAINLWWTAAVGAAVSCAILAWGAANLPAMTLLWVLYH
SLVNVGQTWYSFGWESQLLETGFLAMFLVPWISLSRFPKRLPSPLVCVWG
YRWLLFRIMV
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mRNA from alignment at H-elongata_contig79590:1827..2819+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79590.15612.1 ID=mRNA_H-elongata_contig79590.15612.1|Name=mRNA_H-elongata_contig79590.15612.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=993bp|location=Sequence derived from alignment at H-elongata_contig79590:1827..2819+ (Himanthalia elongata Himel1 dioecious)
ATCCAGGTGCCCACAATTTTTTGGTTTGTGCCCCCAACGGCGATCAACTT
GTGGTGGACAGCGGCGGTCGGGGCCGCTGTTTCGTGCGCCATCTTGGCGT
GGGGAGCAGCTAATCTCCCGGCCATGACCCTCCTGTGGGTACTCTATCAC
TCCCTAGTGAACGTGGGACAGACGTGGTATTCCTTCGGTACGTGCAGAGG
AGAGGATGGGGGGGGGGGGGGCAAAAAAAAAAAANNNNNNNNNNTCTCGG
GAGCGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGTCAAGTTGGA
GGAAGGCGGTAGGTAGGTCACGGCCCCGTCTCACTCGCTCGTGTTTTTCT
TTTTCGGTACTTATGTGATTATTAGCAGTTGTCACTACTTTCTCTTTTAC
CGTAAAGCAATATCAATAGCGGAAGTGTGTATGGTCATCACACACACTGT
AGCAGAGCATCCATACATTAATCCATATATTAATGAAGTCATGGTTGTAT
GTATGTATTAATGTATGGCTGGTGTCCTCCTGGCGATGATTTCCGTGCCT
TGTGAACAAAAAATATGCTGACCGAATATAGGGGTAGAATCGTGCACCCG
CGTGCGCCGTCGGCGGGAGGGAGTCGTCGCGCTGGCGTTGGACCACGAAA
ATATGAAACCGTAATAAAACGACCGCCCATCAGAGCCCCGTTTCGGCCTC
TCGCTCGAAAAGGAACGAACACTCAGACGAAAACATTATAATAGCTAATT
ATTGTAGTCTCGACTGTGTTCAATGTTTCCTATATGGATCTACTTGGCTG
ACTGAATCCGACCCGTGGGAGTCTCTCCTCGACGCATGCCCCAATGAAAG
GTTGGGAGAGCCAGCTGCTGGAGACTGGATTCTTGGCCATGTTCCTGGTG
CCTTGGATCAGTCTGTCGCGGTTTCCCAAGCGCTTGCCCTCCCCCCTCGT
TTGCGTGTGGGGCTACCGATGGCTGCTATTCCGTATTATGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig79590:1827..2819+

>mRNA_H-elongata_contig79590.15612.1 ID=mRNA_H-elongata_contig79590.15612.1|Name=mRNA_H-elongata_contig79590.15612.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig79590:1827..2819+ (Himanthalia elongata Himel1 dioecious)
ATCCAGGTGCCCACAATTTTTTGGTTTGTGCCCCCAACGGCGATCAACTT
GTGGTGGACAGCGGCGGTCGGGGCCGCTGTTTCGTGCGCCATCTTGGCGT
GGGGAGCAGCTAATCTCCCGGCCATGACCCTCCTGTGGGTACTCTATCAC
TCCCTAGTGAACGTGGGACAGACGTGGTATTCCTTCGATCCAGGTGCCCA
CAATTTTTTGGTTTGTGCCCCCAACGGCGATCAACTTGTGGTGGACAGCG
GCGGTCGGGGCCGCTGTTTCGTGCGCCATCTTGGCGTGGGGAGCAGCTAA
TCTCCCGGCCATGACCCTCCTGTGGGTACTCTATCACTCCCTAGTGAACG
TGGGACAGACGTGGTATTCCTTCGGTTGGGAGAGCCAGCTGCTGGAGACT
GGATTCTTGGCCATGTTCCTGGTGCCTTGGATCAGTCTGTCGCGGTTTCC
CAAGCGCTTGCCCTCCCCCCTCGTTTGCGTGTGGGGCTACCGATGGCTGC
TATTCCGTATTATGGTGGTTGGGAGAGCCAGCTGCTGGAGACTGGATTCT
TGGCCATGTTCCTGGTGCCTTGGATCAGTCTGTCGCGGTTTCCCAAGCGC
TTGCCCTCCCCCCTCGTTTGCGTGTGGGGCTACCGATGGCTGCTATTCCG
TATTATGGTG
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