mRNA_H-elongata_contig79498.15603.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79498.15603.1
Unique NamemRNA_H-elongata_contig79498.15603.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79498.15603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79498contigH-elongata_contig79498:2..590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size589
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79498.15603.1prot_H-elongata_contig79498.15603.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79498 207..563 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931199.4185786-UTR-H-elongata_contig79498:1..2061622931199.4185786-UTR-H-elongata_contig79498:1..206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79498 2..206 +
1691679738.3310633-UTR-H-elongata_contig79498:1..2061691679738.3310633-UTR-H-elongata_contig79498:1..206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79498 2..206 +
1622931199.4482465-UTR-H-elongata_contig79498:563..5901622931199.4482465-UTR-H-elongata_contig79498:563..590Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79498 564..590 +
1691679738.3526912-UTR-H-elongata_contig79498:563..5901691679738.3526912-UTR-H-elongata_contig79498:563..590Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79498 564..590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931199.432016-CDS-H-elongata_contig79498:206..5631622931199.432016-CDS-H-elongata_contig79498:206..563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79498 207..563 +
1691679738.34455-CDS-H-elongata_contig79498:206..5631691679738.34455-CDS-H-elongata_contig79498:206..563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79498 207..563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79498.15603.1

>prot_H-elongata_contig79498.15603.1 ID=prot_H-elongata_contig79498.15603.1|Name=mRNA_H-elongata_contig79498.15603.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MVGRTKNQRHGMGRLQSGALVVIGFLLRPVFFRTPNTNKMEHFEYKAGNA
SRTARLFSAIRGPVHFFHSDAIVPCRGGPNLRLGLSYRQSRMGSGAGVWP
FQRARKERLVIVILTMLS*
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mRNA from alignment at H-elongata_contig79498:2..590+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79498.15603.1 ID=mRNA_H-elongata_contig79498.15603.1|Name=mRNA_H-elongata_contig79498.15603.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=589bp|location=Sequence derived from alignment at H-elongata_contig79498:2..590+ (Himanthalia elongata Himel1 dioecious)
GTATTGTGCACCATTAGTGCCGTTTCCTTTTGTATTGAAGAGTACCTTAA
ACGTTTTTGCTCCTTCGGGATGTTTTTTTTCTAGCTTGTGACCACGGGCT
GGATTTTGACATCAGCTTATGTGAGAATTCAGTCAATCAATCAACAGCGT
TGAGGAGCAAGTTAGAAAATACTTCAATGTGTATCGCCAACCTTCTTCGA
CGCGAATGGTTGGGCGAACAAAAAATCAGAGGCATGGTATGGGTCGTCTT
CAATCAGGCGCCCTTGTGGTTATCGGATTCTTGCTTCGACCGGTATTTTT
CCGTACGCCGAATACAAATAAAATGGAACACTTCGAATACAAAGCAGGAA
ATGCTTCGCGGACTGCGCGGTTGTTTTCAGCAATACGTGGTCCAGTGCAC
TTCTTTCATTCTGATGCGATTGTACCTTGTCGGGGAGGCCCAAATCTCCG
TTTGGGTTTGAGCTATAGGCAGAGCCGCATGGGATCGGGTGCGGGCGTAT
GGCCTTTTCAACGAGCGCGAAAGGAGCGGTTAGTAATCGTAATCTTGACC
ATGCTCTCGTGATCACTAAGGCAACAACGAACACTGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig79498:2..590+

>mRNA_H-elongata_contig79498.15603.1 ID=mRNA_H-elongata_contig79498.15603.1|Name=mRNA_H-elongata_contig79498.15603.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig79498:2..590+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGGGCGAACAAAAAATCAGAGGCATGGTATGGGTCGTCTTCAATC
AGGCGCCCTTGTGGTTATCGGATTCTTGCTTCGACCGGTATTTTTCCGTA
CGCCGAATACAAATAAAATGGAACACTTCGAATACAAAGCAGGAAATGCT
TCGCGGACTGCGCGGTTGTTTTCAGCAATACGTGGTCCAGTGCACTTCTT
TCATTCTGATGCGATTGTACCTTGTCGGGGAGGCCCAAATCTCCGTTTGG
GTTTGAGCTATAGGCAGAGCCGCATGGGATCGGGTGCGGGCGTATGGCCT
TTTCAACGAGCGCGAAAGGAGCGGTTAGTAATCGTAATCTTGACCATGCT
CTCGTGAATGGTTGGGCGAACAAAAAATCAGAGGCATGGTATGGGTCGTC
TTCAATCAGGCGCCCTTGTGGTTATCGGATTCTTGCTTCGACCGGTATTT
TTCCGTACGCCGAATACAAATAAAATGGAACACTTCGAATACAAAGCAGG
AAATGCTTCGCGGACTGCGCGGTTGTTTTCAGCAATACGTGGTCCAGTGC
ACTTCTTTCATTCTGATGCGATTGTACCTTGTCGGGGAGGCCCAAATCTC
CGTTTGGGTTTGAGCTATAGGCAGAGCCGCATGGGATCGGGTGCGGGCGT
ATGGCCTTTTCAACGAGCGCGAAAGGAGCGGTTAGTAATCGTAATCTTGA
CCATGCTCTCGTGA
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