mRNA_H-elongata_contig79297.15588.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: D8LI07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI07_ECTSI) HSP 1 Score: 374 bits (961), Expect = 2.240e-114 Identity = 221/352 (62.78%), Postives = 252/352 (71.59%), Query Frame = 1
Query: 1 HTYCLLCSNEGDHIGYSLGLDLFRVAMGVERYAIHRGITPSERWDNDHESPTDHREATARNPQHENIEWDGE--IYWERGSSGVDCELLVAGSYLPAHRVVLARRSHVLESMIVQEIRP--SGDGGEGSA---PLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSPLPYDLRAAAKSYGVPRLEALCTEKISLGADPGYVA-SVGSVQAPPPPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQM------VETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGVLPESSAVSVLEDLVAADRYRLLDMKRVCQSMVRLSIDNCLQ 1014
H + LL GD IGY+LG+DLFR AMG ER+ + G SER R+ + +++ DGE + W RG GVDCELLVAGSYL AHRVVLARRS VL MI QE RP SGD G+ PLQLLLPD+RFDVARALLEFLYTGELRR+ DL SPLPYDLRAAAKSYGV RLE LCTE ISLGADPG G + PPP+LA D+G ALG MEHADVKF+AGGRPIYAHRA+L+C+SEYF+AMFRFRDQM +G G A+ EIVVPDSY+GFVRLLLFLY+ GVLP+++ SVLEDLV ADRYRLL MK V QSMVRL+ +CLQ
Sbjct: 1525 HAFALLA---GDRIGYTLGMDLFRAAMGTERH-LPGGPASSER-------------GVLRSGEG-SVDEDGEGAVGWARG--GVDCELLVAGSYLYAHRVVLARRSPVLRDMIAQEERPAISGDDGDDDGLTPPLQLLLPDIRFDVARALLEFLYTGELRRSLDLDSPLPYDLRAAAKSYGVSRLEVLCTEAISLGADPGEGGPDAGWGEVVPPPSLAGDLGEALGTMEHADVKFVAGGRPIYAHRAVLACQSEYFAAMFRFRDQMRRGAADTSSGRDEHGGHSTAMAEIVVPDSYAGFVRLLLFLYT-GVLPDANPESVLEDLVCADRYRLLGMKSVSQSMVRLAAGSCLQ 1855
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A6H5L4P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P8_9PHAE) HSP 1 Score: 255 bits (651), Expect = 4.900e-75 Identity = 161/297 (54.21%), Postives = 180/297 (60.61%), Query Frame = 1
Query: 1 HTYCLLCSNEGDHIGYSLGLDLFRVAMGVERY------AIHRGITPSERWDNDHESPTDHREATARNPQHENIEWDGEIYWERGSSGVDCELLVAGSYLPAHRVVLARRSHVLESMIVQEIRPSGDGGEG-----SAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSPLPYDLRAAAKSYGVPRLEALCTEKISLGADPGYV---ASVGSV----------------------------QAPPPPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFR 765
H + LL GD IGY+LG+DLFR AMG ER+ + RG+ S D E +G + W RG GVDCELLVAGSYL AHRVVLARRS E RP+ +G +G + PLQLLLPD+RFDVARALLEFLYTGELR + DL SPLPYDLRAAAKSYGV RLEALCTE ISLG DPG A G V Q PPP+LA DIG ALG MEHADVKF+AGGRPIYAHRA+LSC+SEYF+AM RFR
Sbjct: 283 HVFVLLA---GDRIGYTLGMDLFRTAMGTERHLPGDPASSERGVLRSGEGSVDGER-------------------EGAVGWARG--GVDCELLVAGSYLHAHRVVLARRS--------PEERPAINGDDGGDDGLTPPLQLLLPDIRFDVARALLEFLYTGELRSSLDLDSPLPYDLRAAAKSYGVTRLEALCTEAISLGGDPGEGGPDAGWGEVGDGRINCFEALSTVLKPKPSATMFGTPFQVVPPPSLAGDIGEALGTMEHADVKFVAGGRPIYAHRAVLSCQSEYFAAMLRFR 547
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: K3X898_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X898_GLOUD) HSP 1 Score: 137 bits (346), Expect = 2.340e-32 Identity = 102/290 (35.17%), Postives = 147/290 (50.69%), Query Frame = 1
Query: 247 DCELLVAGSYLPAHRVVLARRSHVLESMIVQEIRPS--------GDGGEGSAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSPLPYDLRAAAKSYGVPRLEALCTEKISL------GADPGYVASV------GSVQAPPPPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYS--AGVLPES-------------SAVSVLEDLVAADRYRLLDMKRVCQSMVRLSIDNCL 1011
D LLV+G L AH+ +LARRS VL +I+ E R G G E S ++LLLP LR+DVA+ LLEF+YT D S L D+ AA+++ +P LE +C + + G +P V G V+ TL D+ ALG +D +A G I HR +L RSEYF A+ F + + GG++ I V +SY G +R+L F+Y+ A VLP S + ++EDL+AAD+Y L KR+C+ + +++ NCL
Sbjct: 455 DIALLVSGKRLFAHQFLLARRSRVLRDLILDEQRNQYASSSTGQGSGNEQSTVMELLLPQLRYDVAKILLEFMYTDNFSAKLDPQSYLIRDVLRAAQTFELPSLETICRDIFDVSSAFGTGIEPFPSKEVEILPEDGEVRKLQ--TLNHDLHFALGDATFSDTTIVAEGHEIAVHRCVLIARSEYFRALLGFHVK--------QHGGQEQKKVIHVDESYLGMLRVLKFIYNGHATVLPHSRDGNAEPNEDPSATTEQLIEDLIAADKYGLARFKRLCEHSIHVNVANCL 734
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A7S2PMK6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PMK6_9STRA) HSP 1 Score: 129 bits (324), Expect = 1.120e-29 Identity = 91/257 (35.41%), Postives = 141/257 (54.86%), Query Frame = 1
Query: 247 DCELLVAGSYLPAHRVVLARRSHVLESMIVQEIRPSGDGGEGSAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLS--SPLPYDLRAAAKSYGVPRLEALCTEKISLGADPGYVASVGSVQAPPPPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGVLPESSAVSVLEDLVAADRYRLLDMKRVCQSMVRLSIDNCL 1011
DC L+VAG L H+VVL RS + M+ E RP+ E S ++LLLPDL ++V +LEFLYT ++ TF L+ SP+ DL AA+ + +P L ++C + + + D + TL++D+ AL + AD+KF+ G IYAHR +LS RS +F +F D + K E D + I +P+S +R+L ++Y+ V S V ED++ A R++LLDMK +S + ++ +N L
Sbjct: 175 DCVLIVAGRRLFCHKVVLHYRSEKFKEMLELEDRPT----EKSELIELLLPDLGYEVGLCVLEFLYTDDV--TFPLTPLSPITADLLRAAEKFDLPCLASICRKILDVYRDQPEAQDTKNNNYT---TLSSDLERALNDNQWADIKFVVSGTSIYAHRCILSLRSPFFRELF---DNVQR--QKIEENKVDELDVIKLPESLPCVLRMLSYVYTGRVASNLSEVGRREDILIAHRFQLLDMKHQSESEIEVTPENSL 417
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A8J5IUZ0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IUZ0_9STRA) HSP 1 Score: 128 bits (321), Expect = 5.240e-29 Identity = 108/307 (35.18%), Postives = 151/307 (49.19%), Query Frame = 1
Query: 232 GSSGVDCELLVAGSYLPAHRVVLARRSHVLESMIVQE-------IRPSGDGGEGSAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSP-LPYDLRAAAKSYGVPRLEALCTEKISLGADPGYVASVGSVQAPPPP----------------------------TLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGV-LPE-------SSAVS--VLEDLVAADRYRLLDMKRVCQSMVRLSIDNCLQ 1014
G +G D L+V+G LPAH+++LA+RS VL +I+ E + S G+ +LLLP LR DVAR LLEF+YT +S L +D+ AAK Y +P L LC +++ + AS S+ PP TL D+ AL AD IA GR I HR +L RSEYF A+ F ++ E + E + + V DSY+G VR+L F+Y V LP+ + VS +LEDLVAAD+Y L MKR+C+ + ++ NCL+
Sbjct: 408 GIAGADLVLVVSGQRLPAHKLLLAQRSPVLRELILDEEQQQQNRLTTSESDKFGTETTELLLPTLRLDVARLLLEFIYTDNFTLEVSKNSYYLVHDVLRAAKLYKLPSLVLLCRQRL-------FSASPSSLFGSPPEIEIADDELSDTSSEEDEDESEALDRSTRTLNDDMKFALSDDVWADTVLIAEGRRIPVHRCMLIARSEYFRAVLAFH-RLAENEVT-----ERKMAVVNVEDSYAGIVRVLRFIYYDQVALPQLKRTGETDAEVSDQLLEDLVAADKYGLERMKRLCEHAIGVTAANCLE 701
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A329T2Q8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T2Q8_9STRA) HSP 1 Score: 128 bits (321), Expect = 6.050e-29 Identity = 108/307 (35.18%), Postives = 152/307 (49.51%), Query Frame = 1
Query: 232 GSSGVDCELLVAGSYLPAHRVVLARRSHVLESMIVQE-------IRPSGDGGEGSAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSP-LPYDLRAAAKSYGVPRLEALCTEKISLGADPGYVASVGSVQAPPPP----------------------------TLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGV-LPE-------SSAVS--VLEDLVAADRYRLLDMKRVCQSMVRLSIDNCLQ 1014
G +G D L+V+G LPAH+++LA+RS VL +I+ E + S G+A +LLLP LR DVA+ LLEF+YT +S L +D+ AAK Y +P L LC +++ + AS S+ PP TL D+ AL AD IA GR I HR +L RSEYF A+ F ++ E + E + + V DSY+G VR+L F+Y V LP+ + VS +LEDLVAAD+Y L MKR+C+ + ++ NCL+
Sbjct: 840 GIAGADLVLVVSGQRLPAHKLLLAQRSPVLRELILDEEQQQQDRLTTSESDKFGTATTELLLPTLRLDVAQLLLEFIYTDNFTLEVSKNSYYLVHDVLRAAKLYKLPSLVLLCRQRL-------FSASPSSLFGSPPEIEIADDELSDTSSEEDEDESEALDRSTRTLNGDMKFALSDDVWADTVLIAEGRRIPVHRCMLIARSEYFRAVLAFH-RLAENEVT-----ERKMAVVNVEDSYAGIVRVLRFIYYDQVALPQLKRTGDTDAEVSDQLLEDLVAADKYGLERMKRLCEHAIGVTAANCLE 1133
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A662X905_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X905_9STRA) HSP 1 Score: 127 bits (318), Expect = 7.470e-29 Identity = 109/325 (33.54%), Postives = 152/325 (46.77%), Query Frame = 1
Query: 247 DCELLVAGSYLPAHRVVLARRSHVLESMIVQE-------IRPSGDGGEG-----SAPLQLLLPDLRFDVARALLEFLYTGELRRTFDL--SSPLPYDLRAAAKSYGVPRLEALCTEKISLGA---------------------------------DPGYVASVGSVQAPPPPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGV-LP---------------------ESSAVSVLEDLVAADRYRLLDMKRVCQSMVRLSIDNCLQ 1014
D L+V+G L AH+++L RRS VL +I++E +R DG S+P++LLLP LR DVARAL+EF+YT L + SS L D+ AA+ Y VP L LC E++ + D + G+ + TL D+ AL ADV +A GR I AHR +L RSEYF A+F F Q T G T + V +SY G +R+L F+Y V LP E ++ +LEDL+AAD+Y L MKR+C+ V +++ NCL+
Sbjct: 200 DIVLIVSGQRLAAHKLLLGRRSPVLRELILEEEQQQNQLVRRETDGELAPSSTISSPMELLLPQLRVDVARALVEFIYTDNLSPDLNPQGSSYLIRDVLRAARIYKVPNLVQLCRERLFSASPVSLFDTPIELEEGDESEEDESSATEGKEFDDDDEDSIPGTGAAR-----TLNDDMKLALTDTAWADVVLVAEGRAIPAHRCMLVARSEYFRAVFAF--QNASTHSTDGIHGSGEPTVVNVEESYDGLMRVLHFIYHDQVTLPLAKSKSEAYDGKESSDDGEEAEEASDQLLEDLLAADKYGLERMKRLCEHAVCVTVVNCLE 517
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: D0MVD1_PHYIT (Transmembrane protein, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MVD1_PHYIT) HSP 1 Score: 125 bits (313), Expect = 6.020e-28 Identity = 107/307 (34.85%), Postives = 151/307 (49.19%), Query Frame = 1
Query: 232 GSSGVDCELLVAGSYLPAHRVVLARRSHVLESMIV-----QEIRPSGDGGEG-----SAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSP---LPYDLRAAAKSYGVPRLEALCTEKISLGADPG--YVASVGSVQAPP---------------------PPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGV-LPESS---------AVSVLEDLVAADRYRLLDMKRVCQSMVRLSIDNCLQ 1014
G +G D L+V+G LPAH+++LA+RS VL +I+ Q+ R + + S ++LLLP LR DVAR LLEF+YT T D+S L +D+ AAK Y +P L LC +++ A P + AS S + P L D+ AL AD IA GR I HR +L RSEYF A+ F K + + + V DSY+ VR+L F+Y V LP+S + +LEDLVAAD+Y L +KR+C+ +R++ NCL+
Sbjct: 437 GIAGADLVLVVSGQRLPAHKLLLAQRSPVLRELILDEEQQQQNRITASDSDTYKTSVSETMELLLPALRADVARLLLEFIYTDNF--TLDVSKSSYYLVHDVLRAAKLYKLPSLVLLCRQRL-FSASPSSLFGASASSPEIAKDELSDSNSEGDEDELETLRRSPRMLNDDMKFALSDAVWADTVLIAEGRRIPVHRCMLIARSEYFRAVLAFHRLAESEATKRK------MAVVNVEDSYAAIVRVLRFIYYDQVALPQSKRNGETDTDVSDQLLEDLVAADKYGLERLKRLCEHAIRVTAANCLE 734
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A662Y5Y8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5Y8_9STRA) HSP 1 Score: 124 bits (312), Expect = 8.340e-28 Identity = 111/320 (34.69%), Postives = 149/320 (46.56%), Query Frame = 1
Query: 247 DCELLVAGSYLPAHRVVLARRSHVLESMIVQE-------IRPSGDGGEG-----SAPLQLLLPDLRFDVARALLEFLYTGELRRTFDL--SSPLPYDLRAAAKSYGVPRLEALCTEKI------SLGADPGYVASVGSVQ----------------------APPPPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGV-LP---------------------ESSAVSVLEDLVAADRYRLLDMKRVCQSMVRLSIDNCLQ 1014
D L+V+G L AH+++LARRS VL +I+ E +R DG S+P++LLLP LR DVARAL+EF+YT L + SS L D+ AA+ Y VP L +C E++ SL P + G + A TL D+ AL D +A GR I HR +L RSEYF A+F F Q T G T + V DSY G VR+L F+Y V LP E ++ +LEDL+AAD+Y L MKR+C+ V ++ NCL+
Sbjct: 489 DIVLIVSGQRLAAHKLLLARRSPVLRELILDEEQQQNQLVRNETDGESTPSSTISSPMELLLPQLRVDVARALVEFIYTDNLSPDLNPQGSSYLIRDVLRAARIYKVPSLAQICRERLFSVSPSSLFEIPVELEEEGEGEEDEAFALEDRAFNDDDEDSIPTAGAARTLNDDMKLALSDTAWTDAILVAEGRTIPVHRCMLVARSEYFRAVFAF--QNASTHAVDGVHGSGEPTVVNVEDSYDGLVRVLHFIYHDQVTLPLAKSKSEAYRGKEDSDDGEEAEDASDQLLEDLLAADKYGLDRMKRLCEHAVCVTAANCLE 806
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A8K1C934_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C934_PYTOL) HSP 1 Score: 124 bits (311), Expect = 8.850e-28 Identity = 99/277 (35.74%), Postives = 138/277 (49.82%), Query Frame = 1
Query: 247 DCELLVAGSYLPAHRVVLARRSHVLESMIVQEIRPSGDGGEGSAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSPLPYDLRAAAKSYGVPRLEALCTEKISLGADPGYVASVGSVQAPPPP---TLATDIGGALGLMEH---ADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYS---AGVLP-------ESSAV-------SVLEDLVAADRYRLLDMKRVCQSMVRLSIDNC 1008
D L+V G + AH+ +LARRS V I+ E R DG E +L+L LR DVAR LLEF+YT L T D S L DL AA+ Y + L +C E++ A Y S G + PP +L D+ G EH +D+K +A RPI HR +L RSEYF A+F F+ Q + I V +SY +R+L F+Y+ V P + A+ +LEDL+AAD+Y L MK +C+ + ++ +NC
Sbjct: 271 DLLLIVDGRGMWAHKFILARRSPVFCEQILMEERTGLDGDEPDVT-ELVLSQLRLDVARLLLEFIYTDNLTLTLDPLSYLCRDLLRAAEQYELESLAVICRERLQHAA---YDGSSGVAELFPPAVPSSLRQDLAFTGG--EHTPWSDLKILAEDRPIAVHRCMLMARSEYFRALFAFQRQQQTSNSSKRV--------ITVEESYRSMLRVLQFIYNDELTSVRPTRRPDDDDDEAMYQVDRTEELLEDLMAADKYGLARMKHLCEHHIVVTPENC 533 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig79297.15588.1 >prot_H-elongata_contig79297.15588.1 ID=prot_H-elongata_contig79297.15588.1|Name=mRNA_H-elongata_contig79297.15588.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=338bp HTYCLLCSNEGDHIGYSLGLDLFRVAMGVERYAIHRGITPSERWDNDHESback to top mRNA from alignment at H-elongata_contig79297:412..2659+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig79297.15588.1 ID=mRNA_H-elongata_contig79297.15588.1|Name=mRNA_H-elongata_contig79297.15588.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2248bp|location=Sequence derived from alignment at H-elongata_contig79297:412..2659+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig79297:412..2659+ >mRNA_H-elongata_contig79297.15588.1 ID=mRNA_H-elongata_contig79297.15588.1|Name=mRNA_H-elongata_contig79297.15588.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2028bp|location=Sequence derived from alignment at H-elongata_contig79297:412..2659+ (Himanthalia elongata Himel1 dioecious)back to top |