mRNA_H-elongata_contig79279.15587.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.250e-33 Identity = 69/173 (39.88%), Postives = 110/173 (63.58%), Query Frame = 1
Query: 1 TMTRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 510
T TRPDI+ A + + +P +HW+AA L Y+ RT +GIT+ + G + ++DADY RRSVSGG VM GG ++WFSR QK + ++E++YVA+A+++ E+ FLRQV FM P + I + EDN+GAI++M NP ++ ++H+D+++ +R+ V+
Sbjct: 167 TQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFE-RGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLS-TTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVE 337
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE) HSP 1 Score: 135 bits (340), Expect = 1.490e-33 Identity = 75/172 (43.60%), Postives = 110/172 (63.95%), Query Frame = 1
Query: 4 MTRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 510
+TRPDI+ + + + + P IHW+AA L Y +RT LGI++ G T L A++DADY RRSVSGG VM AGGAI+WFS+ Q + +++S+YVA+A+M E+ FLRQV FM P + I ++EDNEGAI++ K+P S ++H+D+++ +R VD
Sbjct: 547 LTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFT-LIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLS-TTQSEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISKSNSKHIDVRHHFLRQLVD 716
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE) HSP 1 Score: 130 bits (328), Expect = 2.830e-33 Identity = 73/172 (42.44%), Postives = 107/172 (62.21%), Query Frame = 1
Query: 4 MTRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 510
+TRPDI+ A + + P IHWRAA L Y RT GI++ + G L + DADY RRSVSGG VM AGGAI+WFS+ QK + +++++YVA+A+M E+ FLR+V FM P + I ++EDNEGAI++ K+P S+ ++H+D+++ +R VD
Sbjct: 176 LTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQ-RGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLS-TTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVD 345
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA) HSP 1 Score: 134 bits (337), Expect = 3.810e-33 Identity = 67/170 (39.41%), Postives = 104/170 (61.18%), Query Frame = 1
Query: 7 TRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 510
TRPD++F QL + DNP HWRAA++AL+YL TR G+ GG LSA++DADY CPDTRR VSG ++ G ISW ++ Q + + ++E+++VAL+ + E +++Q+ + D + I+EDN+ I + N RR++H+D++Y VRD V+
Sbjct: 1789 TRPDLAFPLQQLSQFLDNPDPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLS-TTEAEFVALSLCIQECLYIQQLASELKQSSDQPVVIYEDNQSTIHIAHNSEHHRRSKHIDVRYMFVRDLVE 1957
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 129 bits (323), Expect = 4.630e-33 Identity = 68/173 (39.31%), Postives = 109/173 (63.01%), Query Frame = 1
Query: 1 TMTRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 510
T TRPDI+ A + + +P +HW+AA L Y+ RT +GIT+ + G + ++DADY RRSVSGG VM GG ++WFSR QK + ++E++YVA+A+++ E+ FLRQV FM P + I + EDN+GAI++ NP ++ ++H+D+++ +R+ V+
Sbjct: 112 TQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFE-RGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLS-TTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVE 282
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE) HSP 1 Score: 130 bits (328), Expect = 6.420e-33 Identity = 73/176 (41.48%), Postives = 110/176 (62.50%), Query Frame = 1
Query: 4 MTRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGT----KLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 510
+TRPDI+ + + + + P IHW+AA L Y RT GI++ Q GT L +++ADY RRSVSGG VM AGGAI+WFS+ QK + +++++YVA+A+M E+ FLRQV FM P + I ++EDNEGAI++ K+P S+ ++H+D+++ +R VD
Sbjct: 228 LTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISF-----QSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLS-TTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVD 397
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE) HSP 1 Score: 132 bits (331), Expect = 2.110e-32 Identity = 74/172 (43.02%), Postives = 107/172 (62.21%), Query Frame = 1
Query: 4 MTRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 510
+TRPDI+ A + + P IHWRAA L Y RT GI++ + G L + DADY RRSVSGG VM AGGAI+WFS+ QK + +++++YVA+A+M E+ FLRQV FM P + I ++EDNEGAI++ K+P S+ ++H+D+++ +R VD
Sbjct: 480 LTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQ-RGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLS-TTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVD 649
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 129 bits (323), Expect = 3.480e-32 Identity = 68/173 (39.31%), Postives = 109/173 (63.01%), Query Frame = 1
Query: 1 TMTRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 510
T TRPDI+ A + + +P +HW+AA L Y+ RT +GIT+ + G + ++DADY RRSVSGG VM GG ++WFSR QK + ++E++YVA+A+++ E+ FLRQV FM P + I + EDN+GAI++ NP ++ ++H+D+++ +R+ V+
Sbjct: 229 TQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFE-RGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLS-TTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVE 399
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA) HSP 1 Score: 130 bits (328), Expect = 5.640e-32 Identity = 66/170 (38.82%), Postives = 103/170 (60.59%), Query Frame = 1
Query: 7 TRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 510
TRPD++F QL + DNP HWRAA++AL+YL TR G+ GG LSA++DADY CPDTRR VSG ++ G ISW ++ Q + + ++E+++VAL+ + E +++Q+ + D + I+EDN+ I + +N R++H D++Y VRD V+
Sbjct: 645 TRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLTKKQNIVTLS-TTEAEFVALSLCIQECLYIQQLASELKQSSDQPVVIYEDNQSTIHIAQNSEHHGRSKHFDVRYMFVRDLVE 813
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6A4YVS9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YVS9_9STRA) HSP 1 Score: 124 bits (312), Expect = 1.230e-31 Identity = 66/173 (38.15%), Postives = 101/173 (58.38%), Query Frame = 1
Query: 7 TRPDISFAAHQLEKI--NDNPIHWRAAQKALQYLWRTRDLGITYGGKPGQGGTK-LSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVDGG 516
TRPD+++ QL + N P HW A Q+AL+YL TR GI GG LSA++DA+Y +C DTRR +SG + G +SW ++ Q + + ++E+++VALA + EL +LRQ+ + D + + EDN+ IK+ N R++H+D++Y VRD VD G
Sbjct: 20 TRPDLAYTLQQLSQFLHNPGPTHWSAVQRALRYLKGTRTYGIRLGGIASIDDFPFLSAYVDANYAMCVDTRRCISGFFTLFFGSPVSWLAKKQPLVTLS-TTEAEFVALALCIQELLYLRQLASELQQTSDQPVLVDEDNQSTIKIATNAELHGRSKHIDVRYMFVRDLVDSG 191 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig79279.15587.1 >prot_H-elongata_contig79279.15587.1 ID=prot_H-elongata_contig79279.15587.1|Name=mRNA_H-elongata_contig79279.15587.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp MTRPDISFAAHQLEKINDNPIHWRAAQKALQYLWRTRDLGITYGGKPGQGback to top mRNA from alignment at H-elongata_contig79279:2396..2926- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig79279.15587.1 ID=mRNA_H-elongata_contig79279.15587.1|Name=mRNA_H-elongata_contig79279.15587.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=531bp|location=Sequence derived from alignment at H-elongata_contig79279:2396..2926- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig79279:2396..2926- >mRNA_H-elongata_contig79279.15587.1 ID=mRNA_H-elongata_contig79279.15587.1|Name=mRNA_H-elongata_contig79279.15587.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig79279:2396..2926- (Himanthalia elongata Himel1 dioecious)back to top |