mRNA_H-elongata_contig7916.15576.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7916.15576.1
Unique NamemRNA_H-elongata_contig7916.15576.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7916.15576.1 vs. uniprot
Match: D7G8I9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I9_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 1.300e-95
Identity = 219/452 (48.45%), Postives = 283/452 (62.61%), Query Frame = 1 
Query:    1 LLPFGDDSLNLVDARGITGVA--RTWLD--GAAAGGPGGVLTGVLAAGQIFMEKHARETVGRGPRLQM----EVVQCLRLLVTAIVATESCAMKHEARARTEAAVLTELPMLMGSGKRTWSAGWRCFTRRERARKRVKFCAFDLSTVDMPCEAIQGSEVPAREVADCLARVVDSSMILQEALQKVAPRKGRGGAAAVERQDGF-----AVWRAFLRGVRTVS-VAPVASSALVEAVKTVCLDLGGEASTDTITRAAILLLDELIPLE--RDEASVKTPLRMRLASFLSALVRFNLRMLLNPPPPRPPLSFLGLGSSA---RQVYQVIQLTTDKTKP-QKRDDYDPTRDGATSAAVSRALRRLYGYSDEGAVRVISAAEAFVEKIKTEGN--LSADDVASLTRQHSLATVDVVAAIRARGFMLELLEFPGVEEAIAEAQGWGEVERLSATLRK 1290
            LLP+G +  + V A+ I   A  R+WL   G A GGP G LTGVLA  ++ M+K +    GR   LQ     E ++     +TAIVATE+CAMKHE RA TEA     +P   G+G                  K V+FCAFDLSTVDMP +AI+ S+  A+EVA CLARVV SS +LQE + K A   G  G AA     G      +V +AF+RG++TV+ VA   S  LV + +  C +LG E ST+ + RAA LLL+    LE   + A+ + PLR RLA  LSAL+RFNLR LLNPPP +  LS L +  S    R+V++VI L ++++KP  K+D +DPTRDGA SA +SRALRRLY +SD  AV V+S AEAFV  +K +       ++ AS  R HS +TVD+VAAIRAR F+LELLEFPGVE A+++A+GWGE+ERLS  LRK
Sbjct:  888 LLPYGAEVTDGVTAKDIFEAASSRSWLGDGGGADGGPRGALTGVLATARVLMQKASGP--GRASSLQSAVPPEAMRQFESFLTAIVATEACAMKHELRAGTEAG--ETVPPSAGAGVAXXXXXXXXXXXXXXXXKGVRFCAFDLSTVDMPTDAIEDSDAAAKEVAQCLARVVASSKLLQEGMPKRASGAGGAGKAAAVADGGIGGGLASVVKAFMRGLKTVAGVAEPDSCPLVASARGACRELGTEISTEVVKRAAALLLESFEALEGGAEVAATRCPLRQRLAIMLSALIRFNLRTLLNPPPHKS-LSSLHIADSTDKPRKVHEVILLVSEESKPASKKDAFDPTRDGAASAVLSRALRRLYEFSD--AVEVMSRAEAFVADMKGKNRDLYGDEEKASRARLHSQSTVDIVAAIRARNFVLELLEFPGVELAVSQARGWGELERLSTELRK 1332
[Close]
BLAST of mRNA_H-elongata_contig7916.15576.1 vs. uniprot
Match: A0A6H5LA33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA33_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.490e-63
Identity = 167/364 (45.88%), Postives = 222/364 (60.99%), Query Frame = 1 
Query:    1 LLPFGDDSLNLVDARGITGVA--RTWL-DGAAA-GGPGGVLTGVLAAGQIFMEKHARETVGRGPRLQM----EVVQCLRLLVTAIVATESCAMKHEARARTEAAVLTELPMLMGSGKRTWSAGWRCFTRRERARKR--VKFCAFDLSTVDMPCEAIQGSEVPAREVADCLARVVDSSMILQEALQKVAPRKGRGGAAAVERQDGF-----AVWRAFLRGVRTVS-VAPVASSALVEAVKTVCLDLGGEASTDTITRAAILLLDELIPLE--RDEASVKTPLRMRLASFLSALVRFNLRMLLNPPPPRPPLSFLGLGSSA---RQVYQVIQLTTDKTKP-QKRDDYDPTRDGATSAAVSRALRRL 1026
            LLP+G +  + V AR I   A  R+W+ DG+ A GGP G LTGVLA  ++ M+K +    G    LQ     E ++     +T IVATE+CAMKHE RA TEA     +P   G+G    +AG     +    +K+  V+FCAFDLSTVDMP +AI+ S+  A+EVA CLARVV SS +LQE + K A   G  G AA     G      +  +AF+RG++TV+ VA   S  LV +V+  C +LG E ST  + RAA LLL+    LE   +  + + PLR RLA  LSAL+RFNLR LLNPPP +  LS L +  S    R+V++VIQL ++++KP  K+D +DPTRDGA SA +SRALRR+
Sbjct: 1104 LLPYGAEVTDGVTARDIFEAASSRSWVGDGSGAEGGPRGALTGVLATARVLMQKASGP--GGASSLQSSVPPEAMRQFESFLTTIVATEACAMKHELRAGTEAG--ETVPPSAGAGA---AAGTVAAAKAAEGKKKKGVRFCAFDLSTVDMPTDAIEDSDAAAKEVAQCLARVVASSKLLQEGMPKRASGAGGAGKAAAVADGGIGGGLASAVKAFMRGLKTVAGVAEPDSCPLVSSVRAACRELGTEISTKVVKRAAALLLESFEALEGGAEVPATRCPLRQRLAIMLSALIRFNLRTLLNPPPHKS-LSSLHIADSTDKPRKVHEVIQLVSEESKPASKKDAFDPTRDGAASAVLSRALRRV 1459
[Close]
BLAST of mRNA_H-elongata_contig7916.15576.1 vs. uniprot
Match: D7FV49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV49_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.380e-40
Identity = 130/357 (36.41%), Postives = 171/357 (47.90%), Query Frame = 1 
Query:  385 VKFCAFDLSTVDMPCEAIQGSEVPAREVADCLARVVDSSMILQEALQK---VAPRKGRGGAAAVERQDGFAVWRAFLRGVRTVSVAPVASSALVEAVKTVCLDLGGEAST--------DTITRAAILLLDELIPLERD-EASVKTPLRMRLASFLSALVRFNLRMLLNPPPPRPPLSFLGLGSSARQVYQVIQLTTDKTKPQKRD------DYDPTRDGATSAAVSRALRRLYGYSDEGAVRVISAAEAFVEKIKTEGNLSADDVASLTRQHSL-----ATVDVVAAIRARGFMLELLEFPGVEEAIAEAQGWGEVERLSATLRKVRDCPDADAALSLLADVQDLKRWLGTSSPWSH 1386
            V+ CAF+ STV MP +   GSE+ A EV  CL  VV +   ++   ++   V    G  G  +         WRAF   VR  +                     G              + +A ++LL EL PLER  E  VK+PLR RLAS LS+L+RF+LR+ L+ PP R   +   L S     Y   +   +   P          D   T D    A+ S+AL RL G+S E AV V+SAAEAF    +T   L+  D     R  S      AT DVV A+RAR F+L LLE  GVEEAI EA GWG VE  +++L+ ++ C D D  L+LL+DV   K WL +   W H
Sbjct: 1479 VRLCAFNFSTVGMPLDTATGSELQALEVVRCLQGVVTALHKIENFHRRCNLVLKTTGGSGDESNGNSHRLVAWRAFQHEVRAAAANXXXXXXXXXXXXXXXXXXRGRQGRRPSAGMKEKEMAKAGLVLLGELEPLERSPEGLVKSPLRDRLASMLSSLIRFHLRIRLDAPPERLTRAPEALPSCGDPSYAEAKRRAEVLPPSHFSKVHTVVDVSET-DATLGASFSKALFRLEGFSCEMAVEVLSAAEAFAAADQTR--LAERDGGCPARVESAGRLLSATADVVDAVRARKFVLSLLELEGVEEAIVEAGGWGNVEMWASSLKGLKGCADIDEPLTLLSDVGAFKAWLMSKPTWGH 1832
[Close]
BLAST of mRNA_H-elongata_contig7916.15576.1 vs. uniprot
Match: A0A836CH73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH73_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.960e-19
Identity = 141/509 (27.70%), Postives = 201/509 (39.49%), Query Frame = 1 
Query:    1 LLPFGDDSLNLVDARGITGVARTWLDGAAAGGPGGVLTGVLAAGQIFMEKHARETVGRGPRLQMEVVQCLRLLVTAIVATESCAMKHEARARTEAAVLTELPMLMGSGKRTWSAGWRCFTRRERARKRVKFCAFDLSTVDMPCEAIQGSEVPAREVADCLARVVDSSMILQEALQKVAPRKGRGGAAAVERQDGFAVWRAFLRGVRTVS--------------VAPVASSALVEAV-KTVCLDLGGEASTDTITRAAILLLDELIPLERDEASVKTP-----------------LRMRLASFLSALVRFNLRMLLNPPPPRPPLSF----------LGLGSSARQV----YQVIQLTTDKTKPQKRDDYDPTRDGATSAAVSRALRRLYGYSDEGAVRVISAAEAFVEK-----------------------IKTEGNLSADDVASLTRQHSLATVDVVAAIRARGFMLELLEFPGVEEAIAEAQGWGEVERLSATLRKVRDCPDADAA 1320
            L+PF     + + A  +   AR W        PG V+  VLAA     E+      G G      + + L  L  A+VA E+ A+  +A +   AA     PM                        RV FCA+DLST+D PC+A   S      VA  L  V   SM L  A+       G GG+ + E         A L+G+ TV+              V P+  S  ++AV +  C D+G  A        A LLL E+  L    ++   P                 LR RL   LS+ +RF+LR LLN PP  P  +              GSSA  V    +Q+++L         R       + A S+ +++AL  L+      A R ++AAEAF+++                        K  G   ++  A+L     ++ V   AA  A  F+L L+++PG  EAIA A GWG VE L++ L  V     A AA
Sbjct:  312 LVPFSASVTSAITATAVCECARRWFGDTHV--PGCVMPVVLAAAHCLAERS-----GGGXXGTSRMCEPLLPLFKALVALEAAAVLGDAASGATAASSAR-PM------------------------RVLFCAYDLSTIDPPCDARPDSAQHVEAVALLLMAVRRESMALCRAM-------GHGGSTSRELP-----MLALLQGLATVARAAGTGSAATAGKAVLPLEQSGALKAVVEQACRDIGTAACARYAGGCATLLLAEISCLHMQVSAGGAPGDAQAQLSGPGVSSESFLRRRLLEILSSALRFHLRRLLNAPPQSPTAATDMERAGVALRAAAGSSAAAVRSAVWQLVRLA--------RASDGAADESALSSVLTQALAMLWHAQRGAAQRSVAAAEAFLQQRGGGATAPAAQVRSTKAARPARVTKAGGGARSEYEAALVHLEHVSGVQGAAA--ASTFVLSLMDWPGAAEAIAVAGGWGPVETLASQLADVCGGETAGAA 766
[Close]
BLAST of mRNA_H-elongata_contig7916.15576.1 vs. uniprot
Match: A0A7S1VYI4_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VYI4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.490e-6
Identity = 52/179 (29.05%), Postives = 79/179 (44.13%), Query Frame = 1 
Query:  781 TPLRMRLASFLSALVRFNLRMLLNPPP-----PRPPLSFLGLGSSARQVYQVIQLTTDKTKPQKRDDYDPTRDGATSAAVSRALRRLYGYSDEGAVRVISAAEAFVEKI----KTEGNLSADDVASLTRQHSL--ATVDV------VAAIRARGFMLELLEFPGVEEAIAEAQGWGEVE 1266
            +PLR RL  F+ + +RF LR   NP P     P        L  +   V++++++         RD      DG+ S+  S ALR++Y +      +      +FV +      +   L   D   +   H L    VD+      +A  RA  FM +LL +PGV EAI  + GWG+VE
Sbjct:  825 SPLRRRLGEFIGSAIRFYLRRFFNPVPLPLTTPSKAFPPKDLSFARSSVHEIVEMAVTGGNS-GRDT--AVADGSISSVFSSALRQIYDFYQFNKEKQKEGTGSFVTEFCVRQASRRGLGTKDSPIVLSDHDLNEILVDIDEAHISLAGARACKFMHDLLNWPGVTEAIQNSGGWGKVE 1000
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7916.15576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8I9_ECTSI1.300e-9548.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LA33_9PHAE1.490e-6345.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV49_ECTSI2.380e-4036.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CH73_9STRA1.960e-1927.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1VYI4_9STRA5.490e-629.05Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7916contigH-elongata_contig7916:4825..9594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003180.1
Exons9
Model size1386
Cds size1386
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931196.292323-CDS-H-elongata_contig7916:4824..49741622931196.292323-CDS-H-elongata_contig7916:4824..4974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 4825..4974 +
1691679737.1857195-CDS-H-elongata_contig7916:4824..49741691679737.1857195-CDS-H-elongata_contig7916:4824..4974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 4825..4974 +
1622931196.3065104-CDS-H-elongata_contig7916:5327..55401622931196.3065104-CDS-H-elongata_contig7916:5327..5540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 5328..5540 +
1691679737.1954906-CDS-H-elongata_contig7916:5327..55401691679737.1954906-CDS-H-elongata_contig7916:5327..5540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 5328..5540 +
1622931196.320345-CDS-H-elongata_contig7916:6225..63191622931196.320345-CDS-H-elongata_contig7916:6225..6319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 6226..6319 +
1691679737.2041318-CDS-H-elongata_contig7916:6225..63191691679737.2041318-CDS-H-elongata_contig7916:6225..6319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 6226..6319 +
1622931196.3342924-CDS-H-elongata_contig7916:7071..73821622931196.3342924-CDS-H-elongata_contig7916:7071..7382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 7072..7382 +
1691679737.2147737-CDS-H-elongata_contig7916:7071..73821691679737.2147737-CDS-H-elongata_contig7916:7071..7382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 7072..7382 +
1622931196.3512962-CDS-H-elongata_contig7916:7766..78711622931196.3512962-CDS-H-elongata_contig7916:7766..7871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 7767..7871 +
1691679737.2269552-CDS-H-elongata_contig7916:7766..78711691679737.2269552-CDS-H-elongata_contig7916:7766..7871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 7767..7871 +
1622931196.380627-CDS-H-elongata_contig7916:8056..82061622931196.380627-CDS-H-elongata_contig7916:8056..8206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 8057..8206 +
1691679737.2381434-CDS-H-elongata_contig7916:8056..82061691679737.2381434-CDS-H-elongata_contig7916:8056..8206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 8057..8206 +
1622931196.3954005-CDS-H-elongata_contig7916:8463..86141622931196.3954005-CDS-H-elongata_contig7916:8463..8614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 8464..8614 +
1691679737.2467947-CDS-H-elongata_contig7916:8463..86141691679737.2467947-CDS-H-elongata_contig7916:8463..8614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 8464..8614 +
1622931196.4130902-CDS-H-elongata_contig7916:8894..90091622931196.4130902-CDS-H-elongata_contig7916:8894..9009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 8895..9009 +
1691679737.2550113-CDS-H-elongata_contig7916:8894..90091691679737.2550113-CDS-H-elongata_contig7916:8894..9009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 8895..9009 +
1622931196.4291017-CDS-H-elongata_contig7916:9497..95941622931196.4291017-CDS-H-elongata_contig7916:9497..9594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 9498..9594 +
1691679737.2707822-CDS-H-elongata_contig7916:9497..95941691679737.2707822-CDS-H-elongata_contig7916:9497..9594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7916 9498..9594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7916.15576.1prot_H-elongata_contig7916.15576.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7916 4825..9594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7916.15576.1

>prot_H-elongata_contig7916.15576.1 ID=prot_H-elongata_contig7916.15576.1|Name=mRNA_H-elongata_contig7916.15576.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=462bp
LLPFGDDSLNLVDARGITGVARTWLDGAAAGGPGGVLTGVLAAGQIFMEK
HARETVGRGPRLQMEVVQCLRLLVTAIVATESCAMKHEARARTEAAVLTE
LPMLMGSGKRTWSAGWRCFTRRERARKRVKFCAFDLSTVDMPCEAIQGSE
VPAREVADCLARVVDSSMILQEALQKVAPRKGRGGAAAVERQDGFAVWRA
FLRGVRTVSVAPVASSALVEAVKTVCLDLGGEASTDTITRAAILLLDELI
PLERDEASVKTPLRMRLASFLSALVRFNLRMLLNPPPPRPPLSFLGLGSS
ARQVYQVIQLTTDKTKPQKRDDYDPTRDGATSAAVSRALRRLYGYSDEGA
VRVISAAEAFVEKIKTEGNLSADDVASLTRQHSLATVDVVAAIRARGFML
ELLEFPGVEEAIAEAQGWGEVERLSATLRKVRDCPDADAALSLLADVQDL
KRWLGTSSPWSH
back to top

mRNA from alignment at H-elongata_contig7916:4825..9594+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7916.15576.1 ID=mRNA_H-elongata_contig7916.15576.1|Name=mRNA_H-elongata_contig7916.15576.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4770bp|location=Sequence derived from alignment at H-elongata_contig7916:4825..9594+ (Himanthalia elongata Himel1 dioecious)
CTACTTCCGTTTGGAGACGACAGCTTGAATCTGGTAGACGCACGGGGAAT
CACAGGGGTCGCGAGGACTTGGCTTGACGGGGCTGCTGCAGGAGGTCCTG
GCGGTGTGCTAACCGGTGTGCTTGCCGCAGGGCAGATATTCATGGAGAAG
GTGCACTTTTTGTTCTGCGCCAGTTAGAGACAAAAAATATTTTTCATGGC
TAACCCCCCCCCCCTTCACGCTTATCTCTGCACCACGTGATAGTGTGGTA
TAAGCTGAAAAGCGCAAGAAATATATAGCATGTTTGGAATCGCTTTCTCG
TTGCCGTACGAGGTGGAGAAACGTAGGAGGGAATGTATCGCTAGCGCAGG
GAGTGCTTCAAAGCTTGTCACAACCGTAAGCAAAGCATGTACGCTTGAGG
ACATCTAGTAAGCAAGCTGCACTTGCGTTCCTTGGATGCCTACCCACAGT
CTTCCCCGGTAATCGGACCCGCCTATACCCAGTGTCACCCCAACGTGGTG
CAGCACGCGCGGGAAACCGTGGGGCGAGGACCGCGCTTGCAGATGGAGGT
GGTGCAGTGCCTGCGTTTGTTGGTGACTGCTATTGTGGCGACGGAGTCAT
GTGCGATGAAACACGAGGCTCGAGCGAGGACGGAGGCGGCGGTGTTAACG
GAGTTGCCAATGTTGATGGGATCAGGTAAGAGGACCTGGTCGGCCGGATG
GCGATGTTTCACGAGAGTAAGTGGTTGGTTGGCTAATTCTTACGACTCTG
CTCGCTTGTTCAGCTTGTGGCAATAAGAGAGGGAGTTGTAAGTAGTACGG
GGATGCTCTGGATAGCAAGGGGAGGGTTAGATTATGTATGTACTGTGTAT
GTATGAACCTCGGTGCAATAAATAGTCCGGCGGCCGGTGGCACTAGTTTT
CTCTCGTGGTATCTCTCCTGTTACGGGACGATGAGCTATGGGTGCTGTCA
GGAATATATTTATGCCGTGCGTCGTGCTTACGTAGTCTCACTTTCACTTG
CCACGGGGGCGTGAAGTTTGTGTCGAGGGAATCTAGCGGCGGCAAGGGCC
TGGGCTGGCGTAACCTGCATGGTTTACTGCTGTGACATATCGAGCACGTG
ATCAAGTACTCGAAAGATTAAAAAATGAACATTGAAGCTCTACGCCAGCC
TCTTTTATGTAGAGAAACGCATCGTTGTCCTGTAGGCCACCACTGGTGGT
TACACCCTTCCCTTCTGCAGTTCACCCATTACCGTGCATTTTAAATCGCT
GAGGCGGTCGCGTGCTTCTCTCTTTTATCATCCCGAGACCTTGGCCACAA
GCTTTTGATAGCCCCTAACGCCGGTAACTATGTCCGACCACTCCCAACCA
CCCTCCTTGGTACCGTGGCAACTCCCAGAAAAGAGAAAGAGTGGTGATCA
GCGGGAAAGGGCGAGGAAGAGGGTGAAGTTTTGCGCCTTTGACCTTTCCA
CCGTGGACATGCCTTGCGAAGCCATCCAAGGTTCTGAGGTGCCAGGTGAG
ATGAGCCAAGGGCGTGTGAAGCTTTGGGGGGTTCTCGTATTTGTGGCGCT
CTCTGTTGTTATGAATGCCGTGTCGGTTAACCGGAAGAATCGAGTGGTTG
ACTATTCGCTGGTAGCAGAGTCGGGAGTGCGGAGCGAGGATCAATGTTGG
TAGTAGTGGGGATGGTGATAGTGATGATCATTAACATTTTCAACATTATG
CCCTCGCAAGAATAAAAATGTCATAACACAATTCAGTCAGCCAGAGACCT
CTGCATCGCCACTCGCGCTTGTGGCATTAAATGGGTAAAAAAAATCACGA
GTCACTTCATAACGGATTCCCGCTACGTACACCATCCGAAATTGCCACTA
AATGTTTGGCAAGCGGAACCACCCGACTGCAGGTGTAAGCCTAACCACGC
CACGTCGATACCATCGAGCGCTAATCAAAGCGTCTGTTGTCAGGAAGGGA
TAGGGTGCCGAATATTTTAGGTAGGGATAGGGTGTAACAGTAGCATCACG
GATCCCAGATTGAAAATATCACGATGTGCTTTCCCCCGTGGTGGTCTCGC
CCTAAAGAGCTGATGCCATCGGATGTCCGCTGGGTGTTTGTTCACCGCGT
ATACGTCGATTTATTGACAGCCCTGTAAGTGGCCCTTCTCAACGCAGTTT
GTTCCTCTTGCCCCCGGTGGTAGTGCCAATAATATCCAATTATCGATACG
TTCTACCGAAGTCGTGACTCTCTCGGATCGGCGCTCCGCTGCTACAGCCA
GGGAAGTCGCAGACTGCCTGGCGAGGGTGGTCGACTCCTCCATGATCCTG
CAAGAGGCCTTGCAGAAGGTTGCGCCCCGGAAGGGAAGGGGTGGAGCGGC
GGCGGTGGAGAGACAAGACGGTTTTGCGGTGTGGAGAGCGTTCCTACGCG
GTGTGCGCACTGTTTCCGTCGCCCCGGTGGCGTCCTCGGCGCTGGTGGAG
GCCGTGAAGACGGTGTGTCTTGATCTCGGGGGCGAGGCCTCGACCGATAC
GATTACGCGTGCGGCAATTCTCTTGCTGGACGAGTTAATACCGCTGGAGA
GGGACGAGGTGAGTCACGAGTTTAAGGGATCGTACGGATAGAGGTTGGTC
AGTCTAGGGAGTTTTGTCGGAGACTAGCAAGACGAGCAATTTAGTTACGG
ATTTGAGAGGAGTGAGGTGAGCTTTCTGACGAGCCGAGAAACTCGAGTAT
TTAGCGAAGCACTTGTTGCTTGCGCCGTTTATTTCATGTTACTGTTCTTC
AACAAAGATATGGAACCGCCAACATTGTTGCTCGGTAGATGTAGACCAGG
GTCACGTGTTTAAATCATCGAGGATGTGCGGCTTTAACTTCTCGTCGGTA
CGACTTTGACTTTGACCACTACGGTAAACTTCTGGGGGTTGCACGGGGTT
CGCTGGCTCGCGCCTATCCTTCCTCTTGCTTCTGCTTGGCAGGCCTCCGT
CAAAACTCCGCTGAGGATGAGGCTCGCCAGCTTTTTGTCGGCTCTGGTTC
GGTTCAACCTTAGGATGCTGCTAAACCCTCCGCCGCCGCGGCCCCCCGTT
CTCAGCCTGTACTCGACTTCCGCGGTCGGCACTGACCATAGCAAGGTATT
CAAAGGTTACCGCCCGCGATTGCCTTCAGGAGGTTGGTGTTATCACGCTA
CCAACCAAGCCCCGCAACCGCATGCTTCTTCTGATATATGTGTTTGAGTT
TTAGGCTGTACGGTTAGTCGCTCGTCTTTCAGTTGAGTTTTTTAGGTCTC
GGCTCGTCGGCACGGCAGGTGTATCAGGTGATACAGCTCACTACGGACAA
GACGAAGCCTCAAAAGAGGGATGATTACGATCCCACCAGGGACGGAGCGA
CGTCTGCCGCGGTCTCGAGAGCGCTGCGCAGGGTAGGCCATCTCAGCATT
GCGTTTAAACGAGGAAGGCTCTTGTTTTAGGGAGAAGCATCCCGGTGGTA
CGCACACATGCATGATAATCCGGTGGTATAAATAACATGACGCGTCGTGA
GGTTGATTGGACAAGGCAGCGTCGACGAACGACTTGTGGTAGCCGAGCGA
GATCAAATCTTTAGGTGTTATCGGCCTCTGGTGCACCCTGATATTTTCTG
CGGCATCTCCGATCTTTTCCTTGCCCTCTCATGCACCAGCTTTACGGGTA
CTCGGACGAAGGGGCGGTACGGGTGATCTCGGCAGCGGAGGCTTTCGTGG
AGAAAATCAAGACAGAAGGCAACCTGTCCGCCGACGATGTCGCCTCCCTG
ACGCGCCAGCATTCGCTTGCAACGGTGGATGTTGTCGCCGGTGAGAAAAT
ACCTCCCTGTGGACGTTGAGTTCTGGACGTGGGCAGGAAAGAGAGGTAGA
TTGCGACGTCGCGAGAGTTTGGCTTCTACCCTTGTCCATCATATACATGT
AACCTTTTAATATTTATTAGAACATAAGCGCGCGGAGTATTTCTTATCTT
TATTTTTGTACCTGCCAAGGCGATCGCTCATGTATTGGCATGTATTGGCA
TGTATTGGAACGTTTGAGGTGATCGCTAAGGTCTCGTCAACTTTTCCCTT
GCTCGCTCTTGTTCGATAAGCTATCCGCGCCAGGGGCTTCATGCTTGAGC
TTCTGGAGTTCCCCGGAGTCGAGGAAGCTATCGCAGAAGCACAGGGATGG
GGCGAAGTGGAGCGGCTGTCGGCGACGCTCCGAAAGTGAGTCAGTTTCCC
GTTCCGCGAAAAGCCTCGTTGTTAAAAGCCTGTCGTTACAAAAGCCCTGC
GGCACCCCTTTAAGAGACTGGTGCGATGGGGCGAAGAAAGAGAGTAGGGA
TGGTCGGTTTTAGTGCGATATTTACTGTTTTCCCTAACACGACGATCTAG
AGCTTGAAATTATTTATCAATGTTTAGGTGACCAGGTGACGCTTTTCTCT
CTGGTGAGTCAGGAAGTTCAACTGCACCTCTCAAGGGAGAGAGGGGTGAT
ATCCTGTATCACATATTTTCTGCCGCTGTTTTCCTTGGGGAGATGACGTG
CTCGGGAGCACAAATACGGACGAGCGCTTGTGTGATAATCTTCTTAAGTA
ATCCAGACTGTGAAACATGCCTTCGCCGCTCGACAAGCTCGAATTTTATG
TTACCTTTGAAAATAGTAAGCGTCATGCAGTACCTCCCTTCTTCTCTTAT
TTTTTACTGAACATGCCTTCCAGGGTGAGGGACTGTCCAGACGCCGACGC
GGCGCTAAGTCTCCTTGCCGATGTACAAGATCTCAAGAGGTGGCTAGGAA
CGAGTTCGCCGTGGAGCCAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7916:4825..9594+

>mRNA_H-elongata_contig7916.15576.1 ID=mRNA_H-elongata_contig7916.15576.1|Name=mRNA_H-elongata_contig7916.15576.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2772bp|location=Sequence derived from alignment at H-elongata_contig7916:4825..9594+ (Himanthalia elongata Himel1 dioecious)
CTACTTCCGTTTGGAGACGACAGCTTGAATCTGGTAGACGCACGGGGAAT
CACAGGGGTCGCGAGGACTTGGCTTGACGGGGCTGCTGCAGGAGGTCCTG
GCGGTGTGCTAACCGGTGTGCTTGCCGCAGGGCAGATATTCATGGAGAAG
CTACTTCCGTTTGGAGACGACAGCTTGAATCTGGTAGACGCACGGGGAAT
CACAGGGGTCGCGAGGACTTGGCTTGACGGGGCTGCTGCAGGAGGTCCTG
GCGGTGTGCTAACCGGTGTGCTTGCCGCAGGGCAGATATTCATGGAGAAG
CACGCGCGGGAAACCGTGGGGCGAGGACCGCGCTTGCAGATGGAGGTGGT
GCAGTGCCTGCGTTTGTTGGTGACTGCTATTGTGGCGACGGAGTCATGTG
CGATGAAACACGAGGCTCGAGCGAGGACGGAGGCGGCGGTGTTAACGGAG
TTGCCAATGTTGATGGGATCAGGTAAGAGGACCTGGTCGGCCGGATGGCG
ATGTTTCACGAGACACGCGCGGGAAACCGTGGGGCGAGGACCGCGCTTGC
AGATGGAGGTGGTGCAGTGCCTGCGTTTGTTGGTGACTGCTATTGTGGCG
ACGGAGTCATGTGCGATGAAACACGAGGCTCGAGCGAGGACGGAGGCGGC
GGTGTTAACGGAGTTGCCAATGTTGATGGGATCAGGTAAGAGGACCTGGT
CGGCCGGATGGCGATGTTTCACGAGACGGGAAAGGGCGAGGAAGAGGGTG
AAGTTTTGCGCCTTTGACCTTTCCACCGTGGACATGCCTTGCGAAGCCAT
CCAAGGTTCTGAGGTGCCAGCGGGAAAGGGCGAGGAAGAGGGTGAAGTTT
TGCGCCTTTGACCTTTCCACCGTGGACATGCCTTGCGAAGCCATCCAAGG
TTCTGAGGTGCCAGCCAGGGAAGTCGCAGACTGCCTGGCGAGGGTGGTCG
ACTCCTCCATGATCCTGCAAGAGGCCTTGCAGAAGGTTGCGCCCCGGAAG
GGAAGGGGTGGAGCGGCGGCGGTGGAGAGACAAGACGGTTTTGCGGTGTG
GAGAGCGTTCCTACGCGGTGTGCGCACTGTTTCCGTCGCCCCGGTGGCGT
CCTCGGCGCTGGTGGAGGCCGTGAAGACGGTGTGTCTTGATCTCGGGGGC
GAGGCCTCGACCGATACGATTACGCGTGCGGCAATTCTCTTGCTGGACGA
GTTAATACCGCTGGAGAGGGACGAGCCAGGGAAGTCGCAGACTGCCTGGC
GAGGGTGGTCGACTCCTCCATGATCCTGCAAGAGGCCTTGCAGAAGGTTG
CGCCCCGGAAGGGAAGGGGTGGAGCGGCGGCGGTGGAGAGACAAGACGGT
TTTGCGGTGTGGAGAGCGTTCCTACGCGGTGTGCGCACTGTTTCCGTCGC
CCCGGTGGCGTCCTCGGCGCTGGTGGAGGCCGTGAAGACGGTGTGTCTTG
ATCTCGGGGGCGAGGCCTCGACCGATACGATTACGCGTGCGGCAATTCTC
TTGCTGGACGAGTTAATACCGCTGGAGAGGGACGAGGCCTCCGTCAAAAC
TCCGCTGAGGATGAGGCTCGCCAGCTTTTTGTCGGCTCTGGTTCGGTTCA
ACCTTAGGATGCTGCTAAACCCTCCGCCGCCGCGGCCCCCCGCCTCCGTC
AAAACTCCGCTGAGGATGAGGCTCGCCAGCTTTTTGTCGGCTCTGGTTCG
GTTCAACCTTAGGATGCTGCTAAACCCTCCGCCGCCGCGGCCCCCCTTGA
GTTTTTTAGGTCTCGGCTCGTCGGCACGGCAGGTGTATCAGGTGATACAG
CTCACTACGGACAAGACGAAGCCTCAAAAGAGGGATGATTACGATCCCAC
CAGGGACGGAGCGACGTCTGCCGCGGTCTCGAGAGCGCTGCGCAGGTTGA
GTTTTTTAGGTCTCGGCTCGTCGGCACGGCAGGTGTATCAGGTGATACAG
CTCACTACGGACAAGACGAAGCCTCAAAAGAGGGATGATTACGATCCCAC
CAGGGACGGAGCGACGTCTGCCGCGGTCTCGAGAGCGCTGCGCAGGCTTT
ACGGGTACTCGGACGAAGGGGCGGTACGGGTGATCTCGGCAGCGGAGGCT
TTCGTGGAGAAAATCAAGACAGAAGGCAACCTGTCCGCCGACGATGTCGC
CTCCCTGACGCGCCAGCATTCGCTTGCAACGGTGGATGTTGTCGCCGCTT
TACGGGTACTCGGACGAAGGGGCGGTACGGGTGATCTCGGCAGCGGAGGC
TTTCGTGGAGAAAATCAAGACAGAAGGCAACCTGTCCGCCGACGATGTCG
CCTCCCTGACGCGCCAGCATTCGCTTGCAACGGTGGATGTTGTCGCCGCT
ATCCGCGCCAGGGGCTTCATGCTTGAGCTTCTGGAGTTCCCCGGAGTCGA
GGAAGCTATCGCAGAAGCACAGGGATGGGGCGAAGTGGAGCGGCTGTCGG
CGACGCTCCGAAACTATCCGCGCCAGGGGCTTCATGCTTGAGCTTCTGGA
GTTCCCCGGAGTCGAGGAAGCTATCGCAGAAGCACAGGGATGGGGCGAAG
TGGAGCGGCTGTCGGCGACGCTCCGAAAGGTGAGGGACTGTCCAGACGCC
GACGCGGCGCTAAGTCTCCTTGCCGATGTACAAGATCTCAAGAGGTGGCT
AGGAACGAGTTCGCCGTGGAGCCACGGTGAGGGACTGTCCAGACGCCGAC
GCGGCGCTAAGTCTCCTTGCCGATGTACAAGATCTCAAGAGGTGGCTAGG
AACGAGTTCGCCGTGGAGCCAC
back to top