mRNA_H-elongata_contig79147.15574.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79147.15574.1
Unique NamemRNA_H-elongata_contig79147.15574.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79147.15574.1 vs. uniprot
Match: D7FQU4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQU4_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 5.240e-6
Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:    1 GDKLGLMDGQNLKFATSQMLRRGVREASGEATVSTRSRGDRPPRTATDHRTNSTTPWAFDAQLEKGNPTRRPSD 222
            GDKLGL+D QNLKFATSQ+LR+G R  +         R  RPP TAT     +++ W F  Q E    +RR  D
Sbjct:   49 GDKLGLLDEQNLKFATSQVLRKGPRAGN--------QRPRRPPTTAT----GTSSAWGFGTQGETDEASRRAVD 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79147.15574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQU4_ECTSI5.240e-645.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79147contigH-elongata_contig79147:490..1328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size239
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79147.15574.1prot_H-elongata_contig79147.15574.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79147 490..1310 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931196.114207-CDS-H-elongata_contig79147:489..5781622931196.114207-CDS-H-elongata_contig79147:489..578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79147 490..578 -
1691679737.126954-CDS-H-elongata_contig79147:489..5781691679737.126954-CDS-H-elongata_contig79147:489..578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79147 490..578 -
1622931196.1282845-CDS-H-elongata_contig79147:1180..13101622931196.1282845-CDS-H-elongata_contig79147:1180..1310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79147 1181..1310 -
1691679737.1350133-CDS-H-elongata_contig79147:1180..13101691679737.1350133-CDS-H-elongata_contig79147:1180..1310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79147 1181..1310 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931196.1458416-UTR-H-elongata_contig79147:1310..13281622931196.1458416-UTR-H-elongata_contig79147:1310..1328Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79147 1311..1328 -
1691679737.143576-UTR-H-elongata_contig79147:1310..13281691679737.143576-UTR-H-elongata_contig79147:1310..1328Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79147 1311..1328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79147.15574.1

>prot_H-elongata_contig79147.15574.1 ID=prot_H-elongata_contig79147.15574.1|Name=mRNA_H-elongata_contig79147.15574.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MDGQNLKFATSQMLRRGVREASGEATVSTRSRGDRPPRTATDHRTNSTTP
WAFDAQLEKGNPTRRPSDGLPPR
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mRNA from alignment at H-elongata_contig79147:490..1328-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79147.15574.1 ID=mRNA_H-elongata_contig79147.15574.1|Name=mRNA_H-elongata_contig79147.15574.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=839bp|location=Sequence derived from alignment at H-elongata_contig79147:490..1328- (Himanthalia elongata Himel1 dioecious)
GGCGACAAGCTTGGCCTCATGGACGGACAAAACCTCAAGTTCGCCACAAG
CCAGATGCTCCGCCGTGGCGTGCGGGAAGCGAGCGGCGAGGCCACTGTAA
GCACTCGATCCCGAGGCGACCGACCCCCTCGCACGGCGACTGACCATCGT
GAGTTTTTCTTGTATAAAGTTTTGGACGTAGTCTTCTTTTTATTTTCTTC
TCCGTTTCTGCTATATCCACCACCGCTGCTGACTGTTGACCACGATAATA
GCGAATAGTGGGACTGTTAGTCGATCAGGACCGGACGCTTATTGTGCGAG
TTCAATTCAATTCAAATATTACTGCCGAGCTGCTCGTTGTTTCTTATGGT
GCGACCGTTACGACCGTTACCACCACCTCAATCATCACCATCATATCACC
ATCAGACGTTCACGACATCTAAATGTGTGTGTGTTTGTGTGTGTGTCTGT
GTCTGTGTTTTAGGAGTAACTTTGGATACAATGTTCGGAAAGCTTAAATC
TGCGGACATCGAATGAAACGGCCGACATGACGTCGGACGCGCAGTCCTTG
TGCCCTGGGCGTTCGTTGTCTTTTCACCAAGGAGAGCCAAACACGCGAAC
ACTTTGTTTTGTTTTGGATGTTGAATATTTATCATGAGGACTTAGTAAAC
CTACTACATCGTCGTTCCCAGCCCCCTCCCGCCCTCGCCTCTTCTCCTCG
ACGGACCTCCCTTTCCCTCCCCTCCCCTCCCGGCTTTCTTCTCCCGATAG
GAACAAACTCAACGACGCCGTGGGCTTTCGATGCCCAACTGGAGAAAGGC
AACCCAACCCGGCGTCCGTCCGACGGCCTTCCCCCTCGC
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Coding sequence (CDS) from alignment at H-elongata_contig79147:490..1328-

>mRNA_H-elongata_contig79147.15574.1 ID=mRNA_H-elongata_contig79147.15574.1|Name=mRNA_H-elongata_contig79147.15574.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig79147:490..1328- (Himanthalia elongata Himel1 dioecious)
ATGGACGGACAAAACCTCAAGTTCGCCACAAGCCAGATGCTCCGCCGTGG
CGTGCGGGAAGCGAGCGGCGAGGCCACTGTAAGCACTCGATCCCGAGGCG
ACCGACCCCCTCGCACGGCGACTGACCATCATGGACGGACAAAACCTCAA
GTTCGCCACAAGCCAGATGCTCCGCCGTGGCGTGCGGGAAGCGAGCGGCG
AGGCCACTGTAAGCACTCGATCCCGAGGCGACCGACCCCCTCGCACGGCG
ACTGACCATCGAACAAACTCAACGACGCCGTGGGCTTTCGATGCCCAACT
GGAGAAAGGCAACCCAACCCGGCGTCCGTCCGACGGCCTTCCCCCTCGCG
AACAAACTCAACGACGCCGTGGGCTTTCGATGCCCAACTGGAGAAAGGCA
ACCCAACCCGGCGTCCGTCCGACGGCCTTCCCCCTCGC
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