mRNA_H-elongata_contig78920.15556.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78920.15556.1
Unique NamemRNA_H-elongata_contig78920.15556.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78920.15556.1 vs. uniprot
Match: A0A6H5K161_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K161_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.780e-55
Identity = 114/193 (59.07%), Postives = 139/193 (72.02%), Query Frame = 1 
Query:    1 GRLEMVDLLLEAKASTKCATNDTQSTCLHFAAKSHWAEVVRKLVKADPTIQERATTQGDTALMLACLSADETEKTAATLAAMLEPPPAADD--AKRAAQGSDGKMAKEERGVGGSNPKFTLGPDDPRLRAFNRHGHTALHCAAFASCPAAVGMLLEAGADCTAGDKAGRTAFDVATNLAGKR-TPVREIGRGG 570
            G L+M+DLLL+A+ASTK  TNDTQS+CLH AAK++ AE+V +L++ DPTI+E+AT+QGDTALM+ACLSA ETE ++ATL A+L P P +    +  A      K         G  P   LGPDDPRL A NRHGHTALHCAAF+  P AV +LLEAGADCT GDKAGRTA +VA NL  K+ T +RE  RGG
Sbjct:   71 GELKMLDLLLKARASTKMVTNDTQSSCLHIAAKNNAAEIVLRLLEVDPTIEEKATSQGDTALMVACLSAVETEASSATLNALLRPRPTSTTGPSNNATSAPPRKTGSYASAGDGKAPVAVLGPDDPRLVARNRHGHTALHCAAFSQSPTAVRLLLEAGADCTIGDKAGRTAVEVALNLNKKKATGLREGARGG 263
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BLAST of mRNA_H-elongata_contig78920.15556.1 vs. uniprot
Match: D8LLU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU4_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 3.200e-50
Identity = 105/183 (57.38%), Postives = 132/183 (72.13%), Query Frame = 1 
Query:    1 GRLEMVDLLLEAKASTKCATNDTQSTCLHFAAKSHWAEVVRKLVKADPTIQERATTQGDTALMLACLSADETEKTAATLAAMLEPPPAADD--AKRAAQGSDGKMAKEERGVGGSNPKFTLGPDDPRLRAFNRHGHTALHCAAFASCPAAVGMLLEAGADCTAGDKAGRTAFDVATNLAGKRT 543
            G L+M+DLLL+A+ASTK  TNDTQS+CLH AAK++  ++V +L++ DPTI+ERAT+QGDTALM+ACLSA ETE ++ATL A+L+P  A     + +A+     K  +      G  P   LGPDDPRL A NRHGHTALHCAAF+  P AV +LLEAGADCT  D+AG TA +VA NL  K T
Sbjct:   44 GELKMLDLLLKARASTKMVTNDTQSSCLHIAAKNNAEDIVLRLLEVDPTIEERATSQGDTALMVACLSAVETEASSATLNALLQPRLATTTGPSNKASGPPPRKTGRYASAGDGKAPVAVLGPDDPRLVARNRHGHTALHCAAFSQSPTAVRLLLEAGADCTIRDEAGLTAVEVALNLIKKAT 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78920.15556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K161_9PHAE1.780e-5559.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLU4_ECTSI3.200e-5057.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78920contigH-elongata_contig78920:436..2394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue1.3e-43
Seed eggNOG ortholog2880.D8LLU4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size573
Cds size561
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78920.15556.1prot_H-elongata_contig78920.15556.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78920 448..2394 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931193.930509-UTR-H-elongata_contig78920:435..4471622931193.930509-UTR-H-elongata_contig78920:435..447Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78920 436..447 +
1691679736.3448148-UTR-H-elongata_contig78920:435..4471691679736.3448148-UTR-H-elongata_contig78920:435..447Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78920 436..447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931193.9472446-CDS-H-elongata_contig78920:447..5431622931193.9472446-CDS-H-elongata_contig78920:447..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78920 448..543 +
1691679736.3547893-CDS-H-elongata_contig78920:447..5431691679736.3547893-CDS-H-elongata_contig78920:447..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78920 448..543 +
1622931193.9700544-CDS-H-elongata_contig78920:1323..13961622931193.9700544-CDS-H-elongata_contig78920:1323..1396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78920 1324..1396 +
1691679736.3631463-CDS-H-elongata_contig78920:1323..13961691679736.3631463-CDS-H-elongata_contig78920:1323..1396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78920 1324..1396 +
1622931193.9880092-CDS-H-elongata_contig78920:2002..23941622931193.9880092-CDS-H-elongata_contig78920:2002..2394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78920 2003..2394 +
1691679736.3744116-CDS-H-elongata_contig78920:2002..23941691679736.3744116-CDS-H-elongata_contig78920:2002..2394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78920 2003..2394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78920.15556.1

>prot_H-elongata_contig78920.15556.1 ID=prot_H-elongata_contig78920.15556.1|Name=mRNA_H-elongata_contig78920.15556.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
MVDLLLEAKASTKCATNDTQSTCLHFAAKSHWAEVVRKLVKADPTIQERA
TTQGDTALMLACLSADETEKTAATLAAMLEPPPAADDAKRAAQGSDGKMA
KEERGVGGSNPKFTLGPDDPRLRAFNRHGHTALHCAAFASCPAAVGMLLE
AGADCTAGDKAGRTAFDVATNLAGKRTPVREIGRGGG
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mRNA from alignment at H-elongata_contig78920:436..2394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78920.15556.1 ID=mRNA_H-elongata_contig78920.15556.1|Name=mRNA_H-elongata_contig78920.15556.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1959bp|location=Sequence derived from alignment at H-elongata_contig78920:436..2394+ (Himanthalia elongata Himel1 dioecious)
GGCCGGCTGGAGATGGTGGATCTTCTCTTGGAAGCCAAGGCTTCCACCAA
GTGTGCTACGAACGACACCCAGAGCACGTGTCTGCATTTTGCCGCCAAGA
GCCACTGGGTGCGAAAAGCTCAAAACAAGCACTATTATAGTATTTTGTAC
GGTAATGAATAAGAGGACGTATCCTTGTACTAGTTTATTTTTATTCGCAT
TATCCGCATAAACCGATTTGACCTTGTAAGGAGGCGTCAGCGCCGGTGTG
TCTTGTAGCCCCTCCCCCTCCTCCCCCCTCGGTTTGGAATGTTGCCCTTG
GATATTTTTACCTGATCGGTCTCTCGCGCGCGCTCGCTACAAGCTTGTTA
CAGTATGTTGCAGATGATGACCTCTCCTACCGTGTTATATTCATAGTCAT
AGTCATAGTCATAGTCGTAGTCGTACTAATATTAAAAGTATCATTGTAGC
GTTCAACCATTTGTAGCTGGCGAGGTTCGAGAAGGTGCTGCTGCATTTGC
TGCATCGTGATAAAAAAAAAAAGAGGCGTGAACCGGAGATATTTTTGGTT
GATGATTTCTTAGGGAGTAAATGCGGTGAGATGGGCAACGTGCCTTGTAT
TTGTCTAAGATAGTTAACACATCACACCTATACGGGCCATGCCCGACATT
CTCCCTCGGCACAGACAGTTAAGAACCTCAAAACTTAAACACGCCTCCCC
CACCCCTTCCCAAATCGCTTTCAGCATGAACAGTGATCATCTGCGTTGCG
CCGCTCATGTGTGCCCGGGCGCCCCCGCTTTTCAGTGTTGTTTGCTCTCT
AATTAATCATGAAAACGTTCTAATATAATGCTACGCTTTGACGCGTGCCG
TAACGGTTATTTTATCGAACGATTTCATCCTGAGCCAGGCGGAAGTCGTT
CGCAAACTCGTCAAGGCCGACCCGACCATCCAAGAGAGGGCCACCACCCA
AGGCGACACAGGTGATTGATATTACGAGCTGTGCGTGTCAAGAGTGAAAG
CGTCTGCAGGGTGGAACTCCACCGCAGGTACAGGCACTTAGCGCGCTTTT
CTTGACCTGACGACTTGAGTACCAGCCAACGGCGGTTGTTCCACGATTTG
AGGCTGGATAATATTTTGTGTGACCCGCACGGTCTCTTGCCGTTGCGGTG
TGTGTACGTGCGGGTGAACCATCATAATCGCTCGCCGATACGCGGTGTGA
CCAAGTTAATAATTGGTCCGTCAGGGAGGCATTCGCTGAACGGCCCTTGT
GTGCGCTTCCCCTAATTATTCCACCCGCGGATCCTTGGTCGGCCTCTCTC
GCCTAAACCGTGCGCTGTACGTATCCATCTTCTGGTTGGACTGAAAATAC
GCCAAAATTTCCCATCTAATTGTACCGACTGCGGAGATTTTTCAAGGGAG
ACGTATATGCGCAGAACGCGTGCGCCCCGTGTCGCATGCTCGACGCCCCC
CACCCTTCTCACCCACCCAGCACGCCAACGCGCGTAGGTACAAACCCTTC
CCGTTCTGTCCCGTATGGTGCCCTGCGATCGGCCTCCGATTCTGTTTTTC
GTGGCCACGTTTAAAAGCGCTCATGCTAGCGTGCCTATCGGCTGACGAGA
CGGAAAAAACCGCCGCAACCCTCGCCGCGATGCTGGAGCCTCCTCCTGCT
GCCGACGACGCGAAGAGGGCGGCACAGGGAAGCGACGGGAAAATGGCAAA
GGAAGAAAGAGGAGTAGGAGGAAGCAATCCGAAGTTCACGCTGGGCCCCG
ACGACCCTCGCCTTCGGGCTTTCAACCGGCACGGGCACACGGCGCTCCAC
TGCGCCGCATTTGCGTCGTGCCCGGCCGCGGTGGGCATGCTCTTGGAGGC
CGGTGCTGACTGCACGGCGGGTGATAAGGCCGGAAGGACGGCGTTCGACG
TGGCGACGAACCTTGCGGGGAAGAGGACGCCCGTGCGTGAAATTGGCCGG
GGGGGCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig78920:436..2394+

>mRNA_H-elongata_contig78920.15556.1 ID=mRNA_H-elongata_contig78920.15556.1|Name=mRNA_H-elongata_contig78920.15556.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig78920:436..2394+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGATCTTCTCTTGGAAGCCAAGGCTTCCACCAAGTGTGCTACGAA
CGACACCCAGAGCACGTGTCTGCATTTTGCCGCCAAGAGCCACTGGATGG
TGGATCTTCTCTTGGAAGCCAAGGCTTCCACCAAGTGTGCTACGAACGAC
ACCCAGAGCACGTGTCTGCATTTTGCCGCCAAGAGCCACTGGGCGGAAGT
CGTTCGCAAACTCGTCAAGGCCGACCCGACCATCCAAGAGAGGGCCACCA
CCCAAGGCGACACAGGCGGAAGTCGTTCGCAAACTCGTCAAGGCCGACCC
GACCATCCAAGAGAGGGCCACCACCCAAGGCGACACAGCGCTCATGCTAG
CGTGCCTATCGGCTGACGAGACGGAAAAAACCGCCGCAACCCTCGCCGCG
ATGCTGGAGCCTCCTCCTGCTGCCGACGACGCGAAGAGGGCGGCACAGGG
AAGCGACGGGAAAATGGCAAAGGAAGAAAGAGGAGTAGGAGGAAGCAATC
CGAAGTTCACGCTGGGCCCCGACGACCCTCGCCTTCGGGCTTTCAACCGG
CACGGGCACACGGCGCTCCACTGCGCCGCATTTGCGTCGTGCCCGGCCGC
GGTGGGCATGCTCTTGGAGGCCGGTGCTGACTGCACGGCGGGTGATAAGG
CCGGAAGGACGGCGTTCGACGTGGCGACGAACCTTGCGGGGAAGAGGACG
CCCGTGCGTGAAATTGGCCGGGGGGGCGGCCGCTCATGCTAGCGTGCCTA
TCGGCTGACGAGACGGAAAAAACCGCCGCAACCCTCGCCGCGATGCTGGA
GCCTCCTCCTGCTGCCGACGACGCGAAGAGGGCGGCACAGGGAAGCGACG
GGAAAATGGCAAAGGAAGAAAGAGGAGTAGGAGGAAGCAATCCGAAGTTC
ACGCTGGGCCCCGACGACCCTCGCCTTCGGGCTTTCAACCGGCACGGGCA
CACGGCGCTCCACTGCGCCGCATTTGCGTCGTGCCCGGCCGCGGTGGGCA
TGCTCTTGGAGGCCGGTGCTGACTGCACGGCGGGTGATAAGGCCGGAAGG
ACGGCGTTCGACGTGGCGACGAACCTTGCGGGGAAGAGGACGCCCGTGCG
TGAAATTGGCCGGGGGGGCGGC
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