mRNA_H-elongata_contig78775.15546.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78775.15546.1
Unique NamemRNA_H-elongata_contig78775.15546.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A6H5KYR4_9PHAE (V-type proton ATPase subunit a n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYR4_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.260e-40
Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 3
Query:  318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDEVRHESV 548
            MA+WFRSEDMAYVSIIVNEDAAHTCI DLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKL+FFG+EVR  +V
Sbjct:    1 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEEVRFSTV 77          
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: D7FPY6_ECTSI (V-type proton ATPase subunit a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPY6_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.860e-36
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 3
Query:  315 TMAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDEVR 536
            TMA+WFRSEDMAYVSIIVNEDAAHTCI DLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKL+FFG+EV+
Sbjct:   83 TMARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEEVK 156          
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A6U2Q738_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2Q738_9STRA)

HSP 1 Score: 122 bits (306), Expect = 7.760e-32
Identity = 55/71 (77.46%), Postives = 65/71 (91.55%), Query Frame = 3
Query:  318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDE 530
            MAKWFRSE+M YVS+IVNEDAAH C+ DLGKLG++QFTDLNP+LT FQRRYV+Y+KR DELERKL +FG+E
Sbjct:    1 MAKWFRSEEMEYVSLIVNEDAAHQCLSDLGKLGVLQFTDLNPDLTPFQRRYVSYVKRCDELERKLRYFGNE 71          
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A7S4JK70_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JK70_9STRA)

HSP 1 Score: 117 bits (292), Expect = 8.440e-31
Identity = 52/69 (75.36%), Postives = 62/69 (89.86%), Query Frame = 3
Query:  318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFG 524
            MA+WFRSE+M Y+S+IVNEDAAH C+ DLG+LG+IQFTDLNP+LT FQRRYV+Y+KR DELERKL FF 
Sbjct:    1 MARWFRSEEMEYISLIVNEDAAHDCLADLGRLGVIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRFFA 69          
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A835ZAQ4_9STRA (V-type proton ATPase subunit a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ4_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.790e-30
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 3
Query:  318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDEV 533
            MA WFRSEDM YVS+I+NEDAAH+CI DLGKLG++QFTDLNPELT FQRRYV +IKRIDELERK+ FFG+E+
Sbjct:    1 MASWFRSEDMTYVSLIMNEDAAHSCISDLGKLGVVQFTDLNPELTPFQRRYVNFIKRIDELERKIKFFGEEI 72          
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: K0RXJ3_THAOC (V-type proton ATPase subunit a n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXJ3_THAOC)

HSP 1 Score: 117 bits (292), Expect = 9.810e-30
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 3
Query:  318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDE 530
            MA+WFRSE M Y+S+IVNEDAAH C+ DLGKL  IQFTDLNP+LT FQRRYV+Y++R DELERKL FFG E
Sbjct:    1 MARWFRSEHMEYISLIVNEDAAHDCLADLGKLSAIQFTDLNPDLTPFQRRYVSYVRRCDELERKLRFFGSE 71          
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A7S1BU79_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BU79_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.510e-28
Identity = 55/71 (77.46%), Postives = 63/71 (88.73%), Query Frame = 3
Query:  318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDE 530
            MA+WFRSE M Y+S+IVNEDAAH C+ DLG+LGMIQFTDLNP+LT FQRRYV+Y+KR DELERKL FFG E
Sbjct:    1 MARWFRSEPMEYISLIVNEDAAHDCLSDLGQLGMIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRFFGSE 71          
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A7S2IB47_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IB47_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.790e-28
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 3
Query:  318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDE 530
            M++WFRSE M Y+S+IVN DAAH C+ DLGKLG+IQFTDLNPELT FQRRYV+Y+KR DELERKL +F  E
Sbjct:   28 MSRWFRSEPMEYISLIVNGDAAHDCLSDLGKLGVIQFTDLNPELTPFQRRYVSYVKRCDELERKLRYFSTE 98          
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: B7G3I2_PHATC (V-type proton ATPase subunit a n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3I2_PHATC)

HSP 1 Score: 119 bits (298), Expect = 7.100e-28
Identity = 53/72 (73.61%), Postives = 64/72 (88.89%), Query Frame = 3
Query:  318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDEV 533
            MA+WFRSE M Y+S+IVNEDAAH C+ DLGKLG+IQFTDLNP+LT FQRRYV+Y+KR DELERKL +F +E+
Sbjct:    1 MARWFRSEPMEYISLIVNEDAAHDCLADLGKLGVIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRYFSNEI 72          
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A4D9CU34_9STRA (V-type proton ATPase subunit a n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU34_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.180e-27
Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 3
Query:  318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDEV 533
            MAKWFRSE+M YVS+IVNEDAAH  + DLG LG+IQFTDLN E TAFQRRY++YIKR DELERKL +   E+
Sbjct:    1 MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEI 72          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYR4_9PHAE2.260e-4090.91V-type proton ATPase subunit a n=1 Tax=Ectocarpus ... [more]
D7FPY6_ECTSI1.860e-3693.24V-type proton ATPase subunit a n=1 Tax=Ectocarpus ... [more]
A0A6U2Q738_9STRA7.760e-3277.46V-type proton ATPase subunit a (Fragment) n=1 Tax=... [more]
A0A7S4JK70_9STRA8.440e-3175.36V-type proton ATPase subunit a (Fragment) n=1 Tax=... [more]
A0A835ZAQ4_9STRA2.790e-3079.17V-type proton ATPase subunit a n=1 Tax=Tribonema m... [more]
K0RXJ3_THAOC9.810e-3074.65V-type proton ATPase subunit a n=1 Tax=Thalassiosi... [more]
A0A7S1BU79_9STRA1.510e-2877.46V-type proton ATPase subunit a (Fragment) n=1 Tax=... [more]
A0A7S2IB47_9STRA2.790e-2873.24V-type proton ATPase subunit a (Fragment) n=1 Tax=... [more]
B7G3I2_PHATC7.100e-2873.61V-type proton ATPase subunit a n=3 Tax=Phaeodactyl... [more]
A0A4D9CU34_9STRA1.180e-2772.22V-type proton ATPase subunit a n=1 Tax=Nannochloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78775contigH-elongata_contig78775:1541..2088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.3e-32
Seed eggNOG ortholog2880.D7FPY6
KEGG koko:K02154
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04721,ko04966,ko05110,ko05120,ko05152,ko05165,ko05323,map00190,map01100,map04142,map04145,map04721,map04966,map05110,map05120,map05152,map05165,map05323
KEGG ModuleM00160
EggNOG free text desc.vacuolar proton-transporting V-type ATPase complex assembly
EggNOG OGsCOG1269@1,KOG2189@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size548
Cds size231
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.8461413-UTR-H-elongata_contig78775:1540..18571622931192.8461413-UTR-H-elongata_contig78775:1540..1857Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78775 1541..1857 +
1691679735.9479651-UTR-H-elongata_contig78775:1540..18571691679735.9479651-UTR-H-elongata_contig78775:1540..1857Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78775 1541..1857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.8674006-CDS-H-elongata_contig78775:1857..20881622931192.8674006-CDS-H-elongata_contig78775:1857..2088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78775 1858..2088 +
1691679735.9603684-CDS-H-elongata_contig78775:1857..20881691679735.9603684-CDS-H-elongata_contig78775:1857..2088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78775 1858..2088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78775.15546.1prot_H-elongata_contig78775.15546.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78775 1858..2088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78775.15546.1

>prot_H-elongata_contig78775.15546.1 ID=prot_H-elongata_contig78775.15546.1|Name=mRNA_H-elongata_contig78775.15546.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRR
YVAYIKRIDELERKLSFFGDEVRHESV
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mRNA from alignment at H-elongata_contig78775:1541..2088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78775.15546.1 ID=mRNA_H-elongata_contig78775.15546.1|Name=mRNA_H-elongata_contig78775.15546.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=548bp|location=Sequence derived from alignment at H-elongata_contig78775:1541..2088+ (Himanthalia elongata Himel1 dioecious)
ATAAGACATCACGACGCTTTTTGGTGAAATGTAGCTCGTACACATAAGAA CTGTTGGTAGAAATGGAATATGGCCGGCGATGTTGCCACGAAAAATGTGC GGAGGAGCACTGGGCTTTGGTTACAACTTGGACTCTCTTCTAAAATATCA CGATTATCGGCTGGTTTTGTTTTTGTAAGCATTTTGTTCCATCATTGCCG AGCCTCGGCGATCGCGTAGTCTTTATATTCTCTTGCTGAAACGGCTTCGG TCTGTCGCTCGCTCTCGCATTTACTCGCCCTTCTCTCCCTCCTCTCTTCG GGCGAAGGAAGTAGACCATGGCGAAATGGTTCCGCTCAGAGGACATGGCT TACGTGTCCATCATCGTGAACGAGGACGCGGCGCACACGTGCATCTTCGA CCTAGGCAAGCTTGGAATGATTCAGTTCACCGACCTAAACCCGGAACTCA CGGCGTTCCAACGGCGATACGTGGCGTACATCAAGCGCATCGACGAGCTC GAGCGCAAGCTATCCTTCTTTGGGGATGAGGTACGTCACGAATCAGTA
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Coding sequence (CDS) from alignment at H-elongata_contig78775:1541..2088+

>mRNA_H-elongata_contig78775.15546.1 ID=mRNA_H-elongata_contig78775.15546.1|Name=mRNA_H-elongata_contig78775.15546.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig78775:1541..2088+ (Himanthalia elongata Himel1 dioecious)
ATGGCGAAATGGTTCCGCTCAGAGGACATGGCTTACGTGTCCATCATCGT
GAACGAGGACGCGGCGCACACGTGCATCTTCGACCTAGGCAAGCTTGGAA
TGATTCAGTTCACCGACCTAAACCCGGAACTCACGGCGTTCCAACGGCGA
TACGTGGCGTACATCAAGCGCATCGACGAGCTCGAGCGCAAGCTATCCTT
CTTTGGGGATGAGGTACGTCACGAATCAGTAATGGCGAAATGGTTCCGCT
CAGAGGACATGGCTTACGTGTCCATCATCGTGAACGAGGACGCGGCGCAC
ACGTGCATCTTCGACCTAGGCAAGCTTGGAATGATTCAGTTCACCGACCT
AAACCCGGAACTCACGGCGTTCCAACGGCGATACGTGGCGTACATCAAGC
GCATCGACGAGCTCGAGCGCAAGCTATCCTTCTTTGGGGATGAGGTACGT
CACGAATCAGTA
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