mRNA_H-elongata_contig78677.15538.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78677.15538.1
Unique NamemRNA_H-elongata_contig78677.15538.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78677.15538.1 vs. uniprot
Match: UPI000C20B82D (zinc finger BED domain-containing protein 1-like n=2 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20B82D)

HSP 1 Score: 57.0 bits (136), Expect = 1.360e-6
Identity = 46/150 (30.67%), Postives = 72/150 (48.00%), Query Frame = 1 
Query:    1 CATHCLEPTAGKTFASDQVFGIFNRCRKIVTRYTGS-IQLEEWLLMFCTSQTPKVAVLKVIQGVVTRWWSIHDMCDRMVVL-GPAIRAQERAEQAPLLLIALNWEILVGIVLVLKPFKQLQNVLEGSAYVT-SCFIGLISNLCDKLKAAV 441
            C T  L+ T       + V  +  +CR +V  +  S +  E+   M      P+   LKV Q V TRW S   M +R++ +  P   A     +AP  + A  W++L+ +V +LKPF+++   L G  Y+T S  I LI  L   LK+ +
Sbjct:  300 CVTDALKST-------EPVMRLIKKCRALVAHFKHSTVACEKLKSMQKQMLYPE---LKVKQDVSTRWNSTLIMAERLLAIKDPLSAAITSLPRAPEFITATEWDLLIDVVSILKPFEKITIELSGEKYITMSLIIPLIRCLQHSLKSRI 439
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BLAST of mRNA_H-elongata_contig78677.15538.1 vs. uniprot
Match: UPI00084F0C70 (zinc finger BED domain-containing protein 4-like n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=UPI00084F0C70)

HSP 1 Score: 52.8 bits (125), Expect = 3.160e-5
Identity = 46/147 (31.29%), Postives = 66/147 (44.90%), Query Frame = 1 
Query:    1 CATHCLEPTAGKTFAS-DQVFGIFNRCRKIVTRYTGSIQLEEWLLMFCTSQTPKVAVLKVIQGVVTRWWSIHDMCDRMVVLGPAIRAQERAEQAPLLLIALNWEILVGIVLVLKPFKQLQNVLEGSAYVT-SCFIGLISNLCDKLKA 435
            C  H L   A     + D +  +  +CR IV  +  S    E LL     +   V  L + + V TRW S + M  R++ L   + A   A +   L+    WE++VGIV VLKP  Q    + G  YVT S  I ++  +   LKA
Sbjct:   36 CFAHTLNLVAQSALKNIDSIVNVLQKCRNIVIVFKNSNTTAE-LLRKEQIRQGIVTPLSLKRDVPTRWNSTYLMLSRIIELRNILPAVLTARKDVSLIAYEEWEMIVGIVNVLKPVYQATKEMSGEHYVTISKVIPILGCINSALKA 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78677.15538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000C20B82D1.360e-630.67zinc finger BED domain-containing protein 1-like n... [more]
UPI00084F0C703.160e-531.29zinc finger BED domain-containing protein 4-like n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78677contigH-elongata_contig78677:1781..2236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.0420916-CDS-H-elongata_contig78677:1780..22361622931192.0420916-CDS-H-elongata_contig78677:1780..2236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78677 1781..2236 -
1691679735.62227-CDS-H-elongata_contig78677:1780..22361691679735.62227-CDS-H-elongata_contig78677:1780..2236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78677 1781..2236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78677.15538.1prot_H-elongata_contig78677.15538.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78677 1781..2236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78677.15538.1

>prot_H-elongata_contig78677.15538.1 ID=prot_H-elongata_contig78677.15538.1|Name=mRNA_H-elongata_contig78677.15538.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
CATHCLEPTAGKTFASDQVFGIFNRCRKIVTRYTGSIQLEEWLLMFCTSQ
TPKVAVLKVIQGVVTRWWSIHDMCDRMVVLGPAIRAQERAEQAPLLLIAL
NWEILVGIVLVLKPFKQLQNVLEGSAYVTSCFIGLISNLCDKLKAAVKLF
QD
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mRNA from alignment at H-elongata_contig78677:1781..2236-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78677.15538.1 ID=mRNA_H-elongata_contig78677.15538.1|Name=mRNA_H-elongata_contig78677.15538.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at H-elongata_contig78677:1781..2236- (Himanthalia elongata Himel1 dioecious)
TGCGCTACACATTGCCTCGAGCCCACAGCAGGGAAGACGTTCGCAAGCGA
CCAGGTATTCGGTATTTTCAACCGGTGCCGTAAGATAGTTACTCGCTACA
CCGGTTCGATTCAACTTGAGGAATGGCTTCTCATGTTCTGCACATCACAA
ACACCCAAGGTCGCCGTTCTCAAGGTTATCCAAGGCGTGGTGACAAGGTG
GTGGTCTATACATGATATGTGCGACCGAATGGTGGTGCTCGGTCCGGCAA
TTCGTGCCCAAGAACGAGCAGAGCAGGCACCACTTTTGCTGATTGCACTG
AACTGGGAAATCCTGGTGGGCATCGTCCTCGTTCTCAAGCCATTCAAACA
ACTCCAAAATGTACTAGAGGGCTCCGCCTACGTCACGAGTTGCTTTATCG
GCCTCATCAGTAACCTGTGCGATAAGCTCAAAGCAGCCGTGAAGCTTTTC
CAGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig78677:1781..2236-

>mRNA_H-elongata_contig78677.15538.1 ID=mRNA_H-elongata_contig78677.15538.1|Name=mRNA_H-elongata_contig78677.15538.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig78677:1781..2236- (Himanthalia elongata Himel1 dioecious)
TGCGCTACACATTGCCTCGAGCCCACAGCAGGGAAGACGTTCGCAAGCGA
CCAGGTATTCGGTATTTTCAACCGGTGCCGTAAGATAGTTACTCGCTACA
CCGGTTCGATTCAACTTGAGGAATGGCTTCTCATGTTCTGCACATCACAA
ACACCCAAGGTCGCCGTTCTCAAGGTTATCCAAGGCGTGGTGACAAGGTG
GTGGTCTATACATGATATGTGCGACCGAATGGTGGTGCTCGGTCCGGCAA
TTCGTGCCCAAGAACGAGCAGAGCAGGCACCACTTTTGCTGATTGCACTG
AACTGGGAAATCCTGGTGGGCATCGTCCTCGTTCTCAAGCCATTCAAACA
ACTCCAAAATGTACTAGAGGGCTCCGCCTACGTCACGAGTTGCTTTATCG
GCCTCATCAGTAACCTGTGCGATAAGCTCAAAGCAGCCGTGAAGCTTTTC
CAGGATTGCGCTACACATTGCCTCGAGCCCACAGCAGGGAAGACGTTCGC
AAGCGACCAGGTATTCGGTATTTTCAACCGGTGCCGTAAGATAGTTACTC
GCTACACCGGTTCGATTCAACTTGAGGAATGGCTTCTCATGTTCTGCACA
TCACAAACACCCAAGGTCGCCGTTCTCAAGGTTATCCAAGGCGTGGTGAC
AAGGTGGTGGTCTATACATGATATGTGCGACCGAATGGTGGTGCTCGGTC
CGGCAATTCGTGCCCAAGAACGAGCAGAGCAGGCACCACTTTTGCTGATT
GCACTGAACTGGGAAATCCTGGTGGGCATCGTCCTCGTTCTCAAGCCATT
CAAACAACTCCAAAATGTACTAGAGGGCTCCGCCTACGTCACGAGTTGCT
TTATCGGCCTCATCAGTAACCTGTGCGATAAGCTCAAAGCAGCCGTGAAG
CTTTTCCAGGAT
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