mRNA_H-elongata_contig12014.1554.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12014.1554.1
Unique NamemRNA_H-elongata_contig12014.1554.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12014.1554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12014contigH-elongata_contig12014:1180..4554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 orthologEc-16_001910.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001910.2
Exons2
Model size2341
Cds size1770
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12014.1554.1prot_H-elongata_contig12014.1554.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12014 1479..4282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.4096487-UTR-H-elongata_contig12014:1179..14781622929704.4096487-UTR-H-elongata_contig12014:1179..1478Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12014 1180..1478 -
1691679125.5186021-UTR-H-elongata_contig12014:1179..14781691679125.5186021-UTR-H-elongata_contig12014:1179..1478Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12014 1180..1478 -
1622929704.4680865-UTR-H-elongata_contig12014:4282..45541622929704.4680865-UTR-H-elongata_contig12014:4282..4554Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12014 4283..4554 -
1691679125.547225-UTR-H-elongata_contig12014:4282..45541691679125.547225-UTR-H-elongata_contig12014:4282..4554Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12014 4283..4554 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.4280243-CDS-H-elongata_contig12014:1478..16191622929704.4280243-CDS-H-elongata_contig12014:1478..1619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12014 1479..1619 -
1691679125.5286484-CDS-H-elongata_contig12014:1478..16191691679125.5286484-CDS-H-elongata_contig12014:1478..1619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12014 1479..1619 -
1622929704.449877-CDS-H-elongata_contig12014:2653..42821622929704.449877-CDS-H-elongata_contig12014:2653..4282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12014 2654..4282 -
1691679125.5379016-CDS-H-elongata_contig12014:2653..42821691679125.5379016-CDS-H-elongata_contig12014:2653..4282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12014 2654..4282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12014.1554.1

>prot_H-elongata_contig12014.1554.1 ID=prot_H-elongata_contig12014.1554.1|Name=mRNA_H-elongata_contig12014.1554.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=590bp
MTSVTQGAVGGSSAGSGVTRLPGGLGNVSRSPGGRGATEKAARDDGDEPS
RRFPGDGSARGSGAMKLSGGLGNVSRSHGGGKEGNTSGQDYRRGTTSVNS
LQRKANSDSTYVCGKRKQSYLAQEHIHGRTSGTLPSESSSSSEGEGVETT
ETLAGLENMDAVVVSTVTRVDAGSAPADSRAASKRPETVPTTRNESGNDV
DADVNSSLKSSTPPTLDVPAGSSVATSDGRTPGQKSVSEPASGGRRRHER
GRECPPRNPCTSDDYIGKIKQGKKRALSSAAVVDDVDVDKEGKRETNGKE
EEEDSEDDPRVASLFRFAAELSSSRSASRGGDDDGKIKKKHVTKKKRASP
VGKGDSCPEAATRNKLSGKTPDKSFWATRRDKRETTAEASKQRGGMNNLP
APSSEGPKPADDSMPPSAATALDEPSMTRAPSGALRERSTAGASLIRRNG
PRTVEIGAGDTSSDSGSDDNENADQTAPTKGKVISGAGSRRDDGGGTVTA
AIGRGRGMHNDDDVDAGKEDATVIAACCREEQAQQANIKKACGDSSQDAI
ASINLNSDGEGNHVIDTAVPSQELGETSSDSDGGEDDGN*
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mRNA from alignment at H-elongata_contig12014:1180..4554-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12014.1554.1 ID=mRNA_H-elongata_contig12014.1554.1|Name=mRNA_H-elongata_contig12014.1554.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3375bp|location=Sequence derived from alignment at H-elongata_contig12014:1180..4554- (Himanthalia elongata Himel1 dioecious)
AGTCTGTCGGAGACTTGCATGAGACGGTGGAAAGCAGCGGTCATTTCGGG
GGTGGTGGTAGTGGCGAGGGTGGTGAAGGAGGCGGGGGGAGGACCAGCGG
AGGTACAGGCTTGAGAACGATCAGACGGATAGGTGTTCGGGATCATTTGA
GACTGGTCGCGAAAAGCCTGCAAGAATCAGAGGAAAACGATGACCAAAGC
GCCGCCAACGAAAGAAGGCAGGGGGAGGGCTCGGGAATCTACAGCGGCGC
GGGGTCGCAGGGAAGCAACCGAATGACGAGCGTTACCCAAGGCGCGGTTG
GCGGCTCCTCCGCGGGCTCAGGGGTCACGAGACTACCGGGAGGTCTGGGC
AACGTCTCGCGGAGTCCGGGCGGACGAGGCGCGACTGAGAAGGCTGCCCG
TGACGATGGTGATGAACCGAGCCGGAGATTTCCGGGCGACGGCTCCGCGC
GCGGTAGCGGGGCGATGAAGCTGTCTGGTGGCCTCGGCAACGTGTCGCGG
AGTCACGGTGGCGGAAAAGAAGGCAATACTTCAGGCCAAGATTATCGTCG
CGGTACGACCAGCGTCAATTCTCTTCAACGAAAAGCTAATAGTGATAGCA
CTTATGTCTGCGGCAAGCGGAAGCAATCATATCTCGCTCAAGAACATATC
CACGGTCGCACCAGCGGTACGTTGCCAAGCGAAAGCAGCTCGTCCAGCGA
AGGAGAGGGGGTTGAGACAACCGAAACGTTGGCTGGGTTGGAGAACATGG
ATGCGGTTGTGGTCTCCACCGTGACTCGGGTGGATGCGGGTAGCGCCCCT
GCTGACAGCCGAGCCGCAAGCAAAAGACCGGAAACCGTCCCCACTACGAG
AAACGAAAGTGGAAATGATGTTGATGCCGATGTAAACTCGTCGCTGAAGT
CGTCCACGCCCCCTACCCTAGACGTCCCGGCAGGATCCTCGGTTGCTACG
TCTGACGGGCGAACGCCTGGCCAAAAGAGTGTGTCCGAGCCCGCCTCAGG
TGGACGACGGAGACACGAACGAGGGCGCGAGTGCCCTCCTCGAAATCCGT
GTACCTCGGACGATTATATTGGAAAGATAAAACAGGGCAAAAAGAGGGCC
CTGAGTTCTGCTGCAGTGGTCGACGATGTAGACGTGGATAAGGAGGGGAA
AAGAGAAACTAATGGGAAGGAGGAGGAGGAGGACAGCGAGGATGATCCAA
GAGTTGCCTCACTGTTCCGTTTCGCAGCCGAACTCTCTTCTTCCCGTTCA
GCATCGCGTGGCGGGGATGATGACGGAAAAATCAAGAAAAAACACGTGAC
AAAGAAAAAACGAGCTTCGCCGGTTGGCAAAGGTGATTCTTGTCCGGAGG
CGGCAACGAGAAACAAACTCTCCGGAAAAACGCCTGATAAGTCGTTCTGG
GCCACTCGGCGGGACAAACGCGAAACCACCGCCGAAGCGTCCAAGCAGCG
GGGGGGCATGAATAACCTGCCCGCCCCCTCCTCCGAGGGACCGAAACCGG
CTGATGACTCCATGCCCCCTTCAGCTGCTACGGCTTTGGATGAACCTTCG
ATGACTCGTGCCCCTTCTGGAGCGTTGCGGGAGAGATCGACTGCCGGAGC
GTCCTTGATTAGGCGGAACGGGCCGAGAACGGTCGAGATCGGGGCCGGTG
ACACAAGCAGCGACTCGGGTTCGGATGATAATGAGAACGCGGACCAGACT
GCCCCGACCAAGGGAAAGGTCATTAGTGGCGCTGGGAGCCGGAGAGATGA
CGGAGGTGGCACGGTGACAGCTGCGATTGGTCGAGGAAGGGGCATGCATA
ATGATGACGATGTCGATGCGGGTAAAGAAGATGCAACGGTAATCGCTGCT
TGCTGCCGAGAAGAGCAGGCGCAACAAGCCAACATCAAAAAGGCGTGTGG
GGTGAAAGCCAAAATAAAAAGGGGGGGGGGGGGGGGACGGAGTTTTTTAT
TTCCATAGCGGGGTTCTGCGGTCACCTGCGGTCCCCCCCCCCCCCCGTGC
GCGTCTTTTCATTGGTCTTGACGCCGCGAGGCAGTAATGGTTATATTTAA
AGTAATATTTGGGTGTATGTGTATGTGTGTGTCTGTTTTTTCCAATATAA
TTCTTCGCCTTGGCCTCGTATGTAGCTATCACCATGGCGCCACATGCTTT
TAGAGAATTGCACAACCCCCCTCAACCGTTTTGCTACCTCTGTCGGCTCA
CACCTCCGCTTGTTGCTATTGTAGCACCTGGTAAATTATCTTTTAATGAA
ATGAAATATATTTTAAATCGTAGCATTCGGTCTTGGTCCAAGTCCCGATG
GCGGTCAGCAGCAGAGAAAATTAACACTAGACACCAGGCAAGAAAACACG
GCGCGCAGGTGGCCGCGACGGCGAAGATAATTTCACAAACGGTCAAGAAT
GCGCGCGGAAATTGATGTATTCGACCTCGCGTATGACATCCACGTAATAC
TGTTTGGCTTTTCGGAACTCATGGGAGCTCGATTCTGTAGCGGCATTATT
AATATTAAATAGTTGCAAAACAAACATATGAACGGGGAGTGAGCAAAGTC
CTTGGATGGCCCATTGCCATAAAGCGAGAAATAAATTCCCGGTGGAAAAA
AAGAATAGTATAAACGATTACATACCCCATCCCGCCTATTACTCTGGAGG
GGTTTGGAGGGAGGAGGTCAATAACTAATTATTAATAGTATTACACGATG
CCATACATTTTCCTACGCTCTCCACTTGATGCCAATGCCCGAAAAACAAG
ATCGGATCCCCCCCCCCCTCTCTCACCCCCTCTCTCTCTTGCTNNNNNNN
NNNAATATATTTACCCACGCCCAAACTTTTTCTCCCCCCCCCCCTTTGTG
CCCACTCCCCCAAAACAAAATCCGGGCCCCCCCCCCCCCTCTCTCACCCC
CTCTCTCTCTTGCTACTATCCTCTGAGGAACAAAGGACTCGAGCCAGGAT
GCTATCGCCAGCATCAACCTTAACAGTGATGGAGAGGGCAATCATGTTAT
TGATACCGCGGTGCCAAGCCAGGAACTGGGAGAGACGTCGAGCGACAGTG
ACGGTGGAGAGGACGATGGTAACTAACGGTTGCCTTGGCTCTCGAAGGCA
GCTCGACGCCTCCGACTTTGGATGGAACTCCTCTAGAAGAGCAATAACTT
GTTTTTTGTTGCGGGGAGTCTTCTCGTACTCAAGTAACCATCAGCGGAGG
ATGCGCTGCGCCCAGCGGGTGATTTTGTGCGAGGGTGACGCCCCTCTCGA
CCCGGTGCTTTAGTTGACTCATTTATATTCATGTAAATAAAAATATAAAG
TTACATTCATGTCCGTTGATGTTTGGACATGCACCACACAACTGAAGAGG
CAGAAGAAACAGAACCCAAACCCAA
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Coding sequence (CDS) from alignment at H-elongata_contig12014:1180..4554-

>mRNA_H-elongata_contig12014.1554.1 ID=mRNA_H-elongata_contig12014.1554.1|Name=mRNA_H-elongata_contig12014.1554.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3540bp|location=Sequence derived from alignment at H-elongata_contig12014:1180..4554- (Himanthalia elongata Himel1 dioecious)
ATGACGAGCGTTACCCAAGGCGCGGTTGGCGGCTCCTCCGCGGGCTCAGG
GGTCACGAGACTACCGGGAGGTCTGGGCAACGTCTCGCGGAGTCCGGGCG
GACGAGGCGCGACTGAGAAGGCTGCCCGTGACGATGGTGATGAACCGAGC
CGGAGATTTCCGGGCGACGGCTCCGCGCGCGGTAGCGGGGCGATGAAGCT
GTCTGGTGGCCTCGGCAACGTGTCGCGGAGTCACGGTGGCGGAAAAGAAG
GCAATACTTCAGGCCAAGATTATCGTCGCGGTACGACCAGCGTCAATTCT
CTTCAACGAAAAGCTAATAGTGATAGCACTTATGTCTGCGGCAAGCGGAA
GCAATCATATCTCGCTCAAGAACATATCCACGGTCGCACCAGCGGTACGT
TGCCAAGCGAAAGCAGCTCGTCCAGCGAAGGAGAGGGGGTTGAGACAACC
GAAACGTTGGCTGGGTTGGAGAACATGGATGCGGTTGTGGTCTCCACCGT
GACTCGGGTGGATGCGGGTAGCGCCCCTGCTGACAGCCGAGCCGCAAGCA
AAAGACCGGAAACCGTCCCCACTACGAGAAACGAAAGTGGAAATGATGTT
GATGCCGATGTAAACTCGTCGCTGAAGTCGTCCACGCCCCCTACCCTAGA
CGTCCCGGCAGGATCCTCGGTTGCTACGTCTGACGGGCGAACGCCTGGCC
AAAAGAGTGTGTCCGAGCCCGCCTCAGGTGGACGACGGAGACACGAACGA
GGGCGCGAGTGCCCTCCTCGAAATCCGTGTACCTCGGACGATTATATTGG
AAAGATAAAACAGGGCAAAAAGAGGGCCCTGAGTTCTGCTGCAGTGGTCG
ACGATGTAGACGTGGATAAGGAGGGGAAAAGAGAAACTAATGGGAAGGAG
GAGGAGGAGGACAGCGAGGATGATCCAAGAGTTGCCTCACTGTTCCGTTT
CGCAGCCGAACTCTCTTCTTCCCGTTCAGCATCGCGTGGCGGGGATGATG
ACGGAAAAATCAAGAAAAAACACGTGACAAAGAAAAAACGAGCTTCGCCG
GTTGGCAAAGGTGATTCTTGTCCGGAGGCGGCAACGAGAAACAAACTCTC
CGGAAAAACGCCTGATAAGTCGTTCTGGGCCACTCGGCGGGACAAACGCG
AAACCACCGCCGAAGCGTCCAAGCAGCGGGGGGGCATGAATAACCTGCCC
GCCCCCTCCTCCGAGGGACCGAAACCGGCTGATGACTCCATGCCCCCTTC
AGCTGCTACGGCTTTGGATGAACCTTCGATGACTCGTGCCCCTTCTGGAG
CGTTGCGGGAGAGATCGACTGCCGGAGCGTCCTTGATTAGGCGGAACGGG
CCGAGAACGGTCGAGATCGGGGCCGGTGACACAAGCAGCGACTCGGGTTC
GGATGATAATGAGAACGCGGACCAGACTGCCCCGACCAAGGGAAAGGTCA
TTAGTGGCGCTGGGAGCCGGAGAGATGACGGAGGTGGCACGGTGACAGCT
GCGATTGGTCGAGGAAGGGGCATGCATAATGATGACGATGTCGATGCGGG
TAAAGAAGATGCAACGGTAATCGCTGCTTGCTGCCGAGAAGAGCAGGCGC
AACAAGCCAACATCAAAAAGGCGTGTGGGATGACGAGCGTTACCCAAGGC
GCGGTTGGCGGCTCCTCCGCGGGCTCAGGGGTCACGAGACTACCGGGAGG
TCTGGGCAACGTCTCGCGGAGTCCGGGCGGACGAGGCGCGACTGAGAAGG
CTGCCCGTGACGATGGTGATGAACCGAGCCGGAGATTTCCGGGCGACGGC
TCCGCGCGCGGTAGCGGGGCGATGAAGCTGTCTGGTGGCCTCGGCAACGT
GTCGCGGAGTCACGGTGGCGGAAAAGAAGGCAATACTTCAGGCCAAGATT
ATCGTCGCGGTACGACCAGCGTCAATTCTCTTCAACGAAAAGCTAATAGT
GATAGCACTTATGTCTGCGGCAAGCGGAAGCAATCATATCTCGCTCAAGA
ACATATCCACGGTCGCACCAGCGGTACGTTGCCAAGCGAAAGCAGCTCGT
CCAGCGAAGGAGAGGGGGTTGAGACAACCGAAACGTTGGCTGGGTTGGAG
AACATGGATGCGGTTGTGGTCTCCACCGTGACTCGGGTGGATGCGGGTAG
CGCCCCTGCTGACAGCCGAGCCGCAAGCAAAAGACCGGAAACCGTCCCCA
CTACGAGAAACGAAAGTGGAAATGATGTTGATGCCGATGTAAACTCGTCG
CTGAAGTCGTCCACGCCCCCTACCCTAGACGTCCCGGCAGGATCCTCGGT
TGCTACGTCTGACGGGCGAACGCCTGGCCAAAAGAGTGTGTCCGAGCCCG
CCTCAGGTGGACGACGGAGACACGAACGAGGGCGCGAGTGCCCTCCTCGA
AATCCGTGTACCTCGGACGATTATATTGGAAAGATAAAACAGGGCAAAAA
GAGGGCCCTGAGTTCTGCTGCAGTGGTCGACGATGTAGACGTGGATAAGG
AGGGGAAAAGAGAAACTAATGGGAAGGAGGAGGAGGAGGACAGCGAGGAT
GATCCAAGAGTTGCCTCACTGTTCCGTTTCGCAGCCGAACTCTCTTCTTC
CCGTTCAGCATCGCGTGGCGGGGATGATGACGGAAAAATCAAGAAAAAAC
ACGTGACAAAGAAAAAACGAGCTTCGCCGGTTGGCAAAGGTGATTCTTGT
CCGGAGGCGGCAACGAGAAACAAACTCTCCGGAAAAACGCCTGATAAGTC
GTTCTGGGCCACTCGGCGGGACAAACGCGAAACCACCGCCGAAGCGTCCA
AGCAGCGGGGGGGCATGAATAACCTGCCCGCCCCCTCCTCCGAGGGACCG
AAACCGGCTGATGACTCCATGCCCCCTTCAGCTGCTACGGCTTTGGATGA
ACCTTCGATGACTCGTGCCCCTTCTGGAGCGTTGCGGGAGAGATCGACTG
CCGGAGCGTCCTTGATTAGGCGGAACGGGCCGAGAACGGTCGAGATCGGG
GCCGGTGACACAAGCAGCGACTCGGGTTCGGATGATAATGAGAACGCGGA
CCAGACTGCCCCGACCAAGGGAAAGGTCATTAGTGGCGCTGGGAGCCGGA
GAGATGACGGAGGTGGCACGGTGACAGCTGCGATTGGTCGAGGAAGGGGC
ATGCATAATGATGACGATGTCGATGCGGGTAAAGAAGATGCAACGGTAAT
CGCTGCTTGCTGCCGAGAAGAGCAGGCGCAACAAGCCAACATCAAAAAGG
CGTGTGGGGACTCGAGCCAGGATGCTATCGCCAGCATCAACCTTAACAGT
GATGGAGAGGGCAATCATGTTATTGATACCGCGGTGCCAAGCCAGGAACT
GGGAGAGACGTCGAGCGACAGTGACGGTGGAGAGGACGATGGTAACTAAG
ACTCGAGCCAGGATGCTATCGCCAGCATCAACCTTAACAGTGATGGAGAG
GGCAATCATGTTATTGATACCGCGGTGCCAAGCCAGGAACTGGGAGAGAC
GTCGAGCGACAGTGACGGTGGAGAGGACGATGGTAACTAA
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