mRNA_H-elongata_contig7847.15517.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7847.15517.1 vs. uniprot
Match: D7G6C4_ECTSI (Eukaryotic elongation factor-1 B gamma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6C4_ECTSI) HSP 1 Score: 187 bits (475), Expect = 4.070e-54 Identity = 118/160 (73.75%), Postives = 129/160 (80.62%), Query Frame = 1
Query: 1 PVIGYVSYKDAAVIKAKGGLKIALGALKKALIENTYLVGDKITLADITVASALVYPMKLVMSPEYPKAFPCVTRWFTTCVNQPQLMAVLRNVELAKEELTAEGAPAVPKKAKKATXXXXXXXXXXXXXXXXXXXSSPRDIEEPAPENKAPNPLAILDKDV 480
PVIGY+ Y DAAV KAK LKIALGAL+KAL+ TYLVGDKITLADITVASALVYPMKLV+SPEY KAFPCVTRWFTTCVNQPQ AV+ VELAKEE+TAEGAP P K XXXXXXXXXXXXXXXX RD+ PA E KAP+PLA++DK+
Sbjct: 114 PVIGYMPYNDAAVSKAKEDLKIALGALEKALLHRTYLVGDKITLADITVASALVYPMKLVVSPEYRKAFPCVTRWFTTCVNQPQFKAVIGTVELAKEEMTAEGAPKAP---KXXXXXXXXXXXXXXXXXXXEEDDGSRDLGMPAEEKKAPHPLAVMDKEA 270
BLAST of mRNA_H-elongata_contig7847.15517.1 vs. uniprot
Match: A0A6H5JF10_9PHAE (GST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF10_9PHAE) HSP 1 Score: 186 bits (471), Expect = 9.540e-54 Identity = 119/160 (74.38%), Postives = 130/160 (81.25%), Query Frame = 1
Query: 1 PVIGYVSYKDAAVIKAKGGLKIALGALKKALIENTYLVGDKITLADITVASALVYPMKLVMSPEYPKAFPCVTRWFTTCVNQPQLMAVLRNVELAKEELTAEGAPAVPKKAKKATXXXXXXXXXXXXXXXXXXXSSPRDIEEPAPENKAPNPLAILDKDV 480
PVIGY+ Y DAAV KAK LKIALGAL+KAL+ TYLVGDKITLADITVASALVYPMKLV+SPEY KAFPCVTRWFTTCVNQPQ MAV+ VELAKEE+TAEGAP K XXXXXXXXXXXXXXXXX RD+ PA E KAP+PLA++DK+
Sbjct: 92 PVIGYMPYNDAAVSKAKEDLKIALGALEKALLHRTYLVGDKITLADITVASALVYPMKLVVSPEYRKAFPCVTRWFTTCVNQPQFMAVIGTVELAKEEMTAEGAP---KXXXXXXXXXXXXXXXXXXXXXXXEDDGSRDLGMPAEEKKAPHPLAVMDKEA 248
BLAST of mRNA_H-elongata_contig7847.15517.1 vs. uniprot
Match: A0A836CFW7_9STRA (Eukaryotic elongation factor-1 B gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW7_9STRA) HSP 1 Score: 138 bits (347), Expect = 3.250e-35 Identity = 72/110 (65.45%), Postives = 81/110 (73.64%), Query Frame = 1
Query: 1 PVIGYVSYKDAAVIKAKGGLKIALGALKKALIENTYLVGDKITLADITVASALVYPMKLVMSPEYPKAFPCVTRWFTTCVNQPQLMAVLRNVELAKEELTAEGAPAVPKK 330
PVIGY+ + AAV KAK L L L+K L++ TYLVGDK+TLADI V SALVYP+KLVM EY KAFPCV RWFTTCVNQPQ +AV+ VE AKEELT G A P K
Sbjct: 113 PVIGYMPHNAAAVAKAKADLARGLETLEKHLLDKTYLVGDKVTLADIVVVSALVYPVKLVMDAEYRKAFPCVMRWFTTCVNQPQFVAVVGKVEPAKEELTPAGVAAAPAK 222
BLAST of mRNA_H-elongata_contig7847.15517.1 vs. uniprot
Match: A0A7S3XWT6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWT6_HETAK) HSP 1 Score: 125 bits (314), Expect = 2.070e-30 Identity = 67/106 (63.21%), Postives = 75/106 (70.75%), Query Frame = 1
Query: 1 PVIGYVSYKDAAVIKAKGGLKIALGALKKALIENTYLVGDKITLADITVASALVYPMKLVMSPEYPKAFPCVTRWFTTCVNQPQLMAVLRNVELAKEELTAEGAPA 318
PVIGY+ + A KAK L ALG L+ L++ TYLVGDKITLADIT+ SALVYPMKLVM Y FPCV RWFTT VNQPQ AV+ V L + ELTA GAPA
Sbjct: 114 PVIGYMPFNPLATEKAKTDLAKALGVLEGHLLDKTYLVGDKITLADITLCSALVYPMKLVMDAAYRADFPCVQRWFTTVVNQPQFKAVVGEVVLCETELTASGAPA 219
BLAST of mRNA_H-elongata_contig7847.15517.1 vs. uniprot
Match: A0A7S2Y1Q3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1Q3_9STRA) HSP 1 Score: 121 bits (304), Expect = 1.950e-29 Identity = 63/101 (62.38%), Postives = 76/101 (75.25%), Query Frame = 1
Query: 1 PVIGYVSYKDAAVIKAKGGLKIALGALKKALIENTYLVGDKITLADITVASALVYPMKLVMSPEYPKAFPCVTRWFTTCVNQPQLMAVLRNVELAKEELTA 303
PVIGY+ AA KAK L +L ++ L++ TYLVG+KITLADIT+ASALVYP+KLVMSP Y AFPC+ RWFTT VNQPQ AV+ V LA++ELTA
Sbjct: 35 PVIGYMPLNAAATEKAKADLAKSLAVVEAHLVDKTYLVGEKITLADITLASALVYPLKLVMSPAYRAAFPCLIRWFTTIVNQPQFKAVVGEVVLAEQELTA 135
BLAST of mRNA_H-elongata_contig7847.15517.1 vs. uniprot
Match: A0A7R9UIM6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UIM6_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.140e-28 Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 1
Query: 1 PVIGYVSYKDAAVIKAKGGLKIALGALKKALIENTYLVGDKITLADITVASALVYPMKLVMSPEYPKAFPCVTRWFTTCVNQPQLMAVLRNVELAKEELTAEG 309
PV+GY+ Y A KA+G L AL L+ L++ TYLVG+KITLADI VA++L+YP L+ PEY +FPCV RWF TCVNQP+ +AV V LA++EL A+G
Sbjct: 115 PVLGYMPYNAMATEKARGDLAKALSVLEAYLLDKTYLVGEKITLADIHVATSLIYPFSLLCGPEYRSSFPCVMRWFNTCVNQPEFVAVCGTVTLAEKELVAKG 217
BLAST of mRNA_H-elongata_contig7847.15517.1 vs. uniprot
Match: A0A7R9UHZ1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UHZ1_9STRA) HSP 1 Score: 117 bits (293), Expect = 2.560e-27 Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 1
Query: 1 PVIGYVSYKDAAVIKAKGGLKIALGALKKALIENTYLVGDKITLADITVASALVYPMKLVMSPEYPKAFPCVTRWFTTCVNQPQLMAVLRNVELAKEELTAEG 309
PV+GY+ Y A KA+G L AL L+ L++ TYLVG+KITLADI VA++L+YP L+ PEY +FPCV RWF TCVNQP+ +AV V LA++EL A+G
Sbjct: 115 PVLGYMPYNAMATEKARGDLAKALSVLEAYLLDKTYLVGEKITLADIHVATSLIYPFSLLCGPEYRSSFPCVMRWFNTCVNQPEFVAVCGTVTLAEKELVAKG 217
BLAST of mRNA_H-elongata_contig7847.15517.1 vs. uniprot
Match: W7TL25_9STRA (Elongation factor 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL25_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.980e-25 Identity = 59/105 (56.19%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 1 PVIGYVSYKDAAVIKAKGGLKIALGALKKALIENTYLVGDKITLADITVASALVYPMKLVMSPEYPKAFPCVTRWFTTCVNQPQLMAVLRNVELAKEELTAEGAP 315
PV GY+ + A KAK L A+ L L + TYLVG+K+TLADITVASALVYP K+VMSPEY +P V RWF T VNQP AV+ +V LA++EL GAP
Sbjct: 113 PVFGYLPHNAAVTEKAKADLGAAMEILDNHLADKTYLVGEKVTLADITVASALVYPYKIVMSPEYRAQYPHVLRWFLTIVNQPHFRAVIGDVVLAEKELVPSGAP 217
BLAST of mRNA_H-elongata_contig7847.15517.1 vs. uniprot
Match: A0A8J2WRT9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WRT9_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.530e-24 Identity = 56/113 (49.56%), Postives = 76/113 (67.26%), Query Frame = 1
Query: 1 PVIGYVSYKDAAVIKAKGGLKIALGALKKALIENTYLVGDKITLADITVASALVYPMKLVMSPEYPKAFPCVTRWFTTCVNQPQLMAVLRNVELAKEELTAEGAPAVPKKAKK 339
P+IGY+ + A KAK + AL L L++ TY+VG+ +TLADIT+ASALVYP KL M P++ FP V RWF CV+QPQ +AV+ +V LA+ E+ EGA + P+ KK
Sbjct: 108 PIIGYMPFSGPAYGKAKAHVSQALKTLDAHLLDKTYMVGEAMTLADITIASALVYPAKLAMDPKFRAQFPNVFRWFDLCVHQPQFVAVIGDVALAESEMKPEGASSAPQGGKK 220
BLAST of mRNA_H-elongata_contig7847.15517.1 vs. uniprot
Match: A0A484DSB6_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSB6_BRELC) HSP 1 Score: 105 bits (261), Expect = 3.560e-23 Identity = 66/159 (41.51%), Postives = 93/159 (58.49%), Query Frame = 1
Query: 1 PVIGYVSYKDAAVIKAKGGLKIALGALKKALIENTYLVGDKITLADITVASALVYPMKLVMSPEYPKAFPCVTRWFTTCVNQPQLMAVLRNVELAKEELTAEGAPAVPKKAKKATXXXXXXXXXXXXXXXXXXXSSPRDIEEPAPENKAPNPLAILDKD 477
P+IG + AA+ KAK +K AL ++ L+ TYLVG+++TLADI VASALVYP K ++ E+ K F VTRWF+T VNQP+ AV+ +V L LTAEG + K KK ++P++ + P P+ K +PLAIL++D
Sbjct: 80 PIIGVGKFNAAALAKAKADVKKALQIIENHLLLRTYLVGEQVTLADIVVASALVYPFKFILDKEFRKPFSAVTRWFSTVVNQPEFQAVVGDVPLIDVALTAEGDNSNTKAVKKDASKKEKKEN-----------ATPKE-DTPKPK-KVEHPLAILNRD 225 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7847.15517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7847.15517.1 >prot_H-elongata_contig7847.15517.1 ID=prot_H-elongata_contig7847.15517.1|Name=mRNA_H-elongata_contig7847.15517.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp MKLVMSPEYPKAFPCVTRWFTTCVNQPQLMAVLRNVELAKEELTAEGAPAback to top mRNA from alignment at H-elongata_contig7847:5904..6541+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7847.15517.1 ID=mRNA_H-elongata_contig7847.15517.1|Name=mRNA_H-elongata_contig7847.15517.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=638bp|location=Sequence derived from alignment at H-elongata_contig7847:5904..6541+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7847:5904..6541+ >mRNA_H-elongata_contig7847.15517.1 ID=mRNA_H-elongata_contig7847.15517.1|Name=mRNA_H-elongata_contig7847.15517.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig7847:5904..6541+ (Himanthalia elongata Himel1 dioecious)back to top |