mRNA_H-elongata_contig78435.15512.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78435.15512.1
Unique NamemRNA_H-elongata_contig78435.15512.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: D7G6W9_ECTSI (60S ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W9_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 2.010e-88
Identity = 126/154 (81.82%), Postives = 143/154 (92.86%), Query Frame = 1
Query:    1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF 462
            S+VRNKVKYMQ+KKKRHNTNP RGPYHFRSP++IFWRTVRGMLP KT RG+EAL RLSCFEGIP P+DKKKRMVVPNALQVIR+APGRRFCVLGRLS EVGWPH +LIKRLEAQRK+KSEAYYVDKKA K++K+ A A+A+L++V PVLEE+GF
Sbjct:   45 SLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 198          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A835Z9N1_9STRA (60S ribosomal protein L13a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N1_9STRA)

HSP 1 Score: 235 bits (599), Expect = 1.550e-76
Identity = 111/153 (72.55%), Postives = 135/153 (88.24%), Query Frame = 1
Query:    1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFG 459
            S+VRNKVKY QF+KKR NTNP+RGP+HFRSP++IFWRT+RGM+PHKT RGQ A+ RL  FEGIP PFDK+KRMVVP AL+V+R+APGR+ CVLGRLSTEVGW HGDL++RLEA+RKV+SEA+Y  KKAN +++  AEA ADLS+VTPVLE +G
Sbjct:   46 SLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYG 198          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A5J4Z3W8_PORPP (60S ribosomal protein L13a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W8_PORPP)

HSP 1 Score: 209 bits (532), Expect = 2.330e-66
Identity = 103/151 (68.21%), Postives = 121/151 (80.13%), Query Frame = 1
Query:    7 VRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFG 459
            +R K KY+ F +KR NTNPSRGP+HFR+PS+IFWRTVRGMLPHKTERGQEAL RL  FEGIP P+DK KRMVVP+AL+V+R+AP R+ CVLGRLS EVGW + D++ RLE +RKV S AYY  KKA  ++K  A   ADLS VTPVLE FG
Sbjct:   47 IRKKNKYLMFLRKRMNTNPSRGPFHFRAPSRIFWRTVRGMLPHKTERGQEALGRLKVFEGIPPPYDKMKRMVVPDALRVVRLAPRRKHCVLGRLSHEVGWKYQDVLARLETKRKVHSAAYYQRKKALDKLKRKATESADLSKVTPVLEAFG 197          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A7S0LS12_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS12_9EUKA)

HSP 1 Score: 201 bits (510), Expect = 4.520e-63
Identity = 96/144 (66.67%), Postives = 117/144 (81.25%), Query Frame = 1
Query:    1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSS 432
            S+ RNKVKY QF KKR NTNP+RGP+HFRSP++IFWRT+RGMLPHKT RGQ AL RL+CFEGIPEP+DKKKR+VVP+AL+ +R+   R F VLG LS EVGW + DL+ +LEAQRK+K +AYY +KKA   +K  A A ADLS+
Sbjct:   51 SLTRNKVKYAQFMKKRMNTNPNRGPFHFRSPARIFWRTLRGMLPHKTVRGQSALARLACFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQVALKSKAAASADLSA 194          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A7S3H512_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H512_9STRA)

HSP 1 Score: 198 bits (504), Expect = 4.060e-62
Identity = 96/154 (62.34%), Postives = 119/154 (77.27%), Query Frame = 1
Query:    1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF 462
            S+ RNK+KY QF KKR NTNP RGP+HFRSP++IFWRT+RGMLPHKT +GQ AL RL+ FEGIPEP+DKKKR+VVP+AL+ +R+   R F VLG LS EVGW + DL+ +LEAQRK+K +AYY +KKA   +K  A A ADLS V  +L   G+
Sbjct:   44 SLTRNKIKYAQFIKKRMNTNPRRGPFHFRSPARIFWRTLRGMLPHKTVKGQLALGRLAAFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQIALKSKATASADLSPVNAILAPLGY 197          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: W7TSL6_9STRA (60s ribosomal protein l13a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSL6_9STRA)

HSP 1 Score: 196 bits (499), Expect = 3.870e-61
Identity = 95/155 (61.29%), Postives = 120/155 (77.42%), Query Frame = 1
Query:    4 VVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQA--DLSSVTPVLEEFGF 462
            +VRN  +YMQF +KR NTNP RGP+H+R+PS+I WRT+RGMLPHKT RG +AL RL+ FEGIP P+D KKR+VVP AL+++R+ PGRRFC L RL+ EVGW H DL+ RLEA+RK+K+EAYY  KKA    K  AE +A  +LS+V  VL  FG+
Sbjct:   48 LVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A7S1TDT8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDT8_9RHOD)

HSP 1 Score: 195 bits (495), Expect = 9.770e-61
Identity = 91/152 (59.87%), Postives = 120/152 (78.95%), Query Frame = 1
Query:    7 VRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF 462
            +RNK KY+ F +KR NTNP+RGP HFRSPSK+FWRTVRGMLPHKT+RG +AL RL  FEGIP P+DK KRMVVPNAL+V+R+ P R++C LGR+++EVGW + D++ RLEA+RKV SEAYY  KKA  +++  A+A A +  +   L+ +G+
Sbjct:   47 IRNKNKYLIFLRKRMNTNPTRGPIHFRSPSKMFWRTVRGMLPHKTQRGADALARLKVFEGIPAPYDKTKRMVVPNALRVLRLRPDRKYCRLGRIASEVGWKYADVVDRLEAKRKVSSEAYYEKKKAEGKLRVQAKANAAIQEMETKLQNYGY 198          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: UPI000A2A5613 (60S ribosomal protein L13a n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5613)

HSP 1 Score: 193 bits (490), Expect = 1.050e-59
Identity = 91/156 (58.33%), Postives = 121/156 (77.56%), Query Frame = 1
Query:    1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQ--ADLSSVTPVLEEFGF 462
            +  RNK+KY+ F +KR NT PS GP+HFR+PS+IFWRTVRGM+PHKT+RG EA+ RL  F+G+P P+DK+KRMVVP+AL+VIR+ PGR+FCVLGRLS EVGW + D+I  LE +RK KS  Y+  KK  +++K+ AE    ++L SV  VLE +G+
Sbjct:   63 NFYRNKLKYLDFLRKRTNTKPSHGPFHFRAPSRIFWRTVRGMIPHKTKRGTEAMNRLKVFDGVPHPYDKEKRMVVPSALRVIRLKPGRKFCVLGRLSHEVGWKYQDIISTLEEKRKAKSAVYFXHKKKLQKLKDKAEKSKASELKSVNEVLEGYGY 218          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A7S1TQI9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQI9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.350e-59
Identity = 92/154 (59.74%), Postives = 120/154 (77.92%), Query Frame = 1
Query:    1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF 462
            S++RNKVK+  +++KRH TNP +GP H+RSP+++ WR VRGMLPHKT RGQ AL RL+ FEGIP P+DKKKR+VVP AL+V+R+ PGR+F VL  L+ EVGW H DLI+RLE +RK++++A+Y  KKA    K  A A  DLS+VTPVLE  G+
Sbjct:   46 SLLRNKVKWANYRRKRHLTNPKKGPIHYRSPARMLWRVVRGMLPHKTARGQAALARLATFEGIPAPYDKKKRVVVPEALKVLRLQPGRKFTVLKTLANEVGWKHKDLIERLENKRKLEAQAFYEKKKAAAAQKRAATAAVDLSAVTPVLEANGY 199          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: F0Y3B4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3B4_AURAN)

HSP 1 Score: 190 bits (483), Expect = 6.700e-59
Identity = 92/153 (60.13%), Postives = 114/153 (74.51%), Query Frame = 1
Query:    1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFG 459
            S+VRNKVK+  F KKR NTNP RGP H+RSP+++ WRTVRGMLPHKT RGQ+AL RL CFEG+P P+DK K+MVVP AL+V+R+ PGRRF VL RL++E GW H  LI ++E +R  +S  +Y  KK+   +K  A A ADLS V  VLE FG
Sbjct:   46 SLVRNKVKFTAFLKKRTNTNPKRGPIHYRSPARMLWRTVRGMLPHKTHRGQQALARLQCFEGVPPPYDKMKKMVVPEALKVLRLKPGRRFTVLARLASEFGWKHEALIAKMEEKRVARSAEFYAAKKSATALKAKATAAADLSKVADVLEAFG 198          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W9_ECTSI2.010e-8881.8260S ribosomal protein L13a n=2 Tax=Ectocarpus TaxI... [more]
A0A835Z9N1_9STRA1.550e-7672.5560S ribosomal protein L13a n=1 Tax=Tribonema minus... [more]
A0A5J4Z3W8_PORPP2.330e-6668.2160S ribosomal protein L13a n=1 Tax=Porphyridium pu... [more]
A0A7S0LS12_9EUKA4.520e-6366.67Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S3H512_9STRA4.060e-6262.34Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W7TSL6_9STRA3.870e-6161.2960s ribosomal protein l13a n=1 Tax=Nannochloropsis... [more]
A0A7S1TDT8_9RHOD9.770e-6159.87Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
UPI000A2A56131.050e-5958.3360S ribosomal protein L13a n=1 Tax=Exaiptasia diap... [more]
A0A7S1TQI9_9STRA2.350e-5959.74Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0Y3B4_AURAN6.700e-5960.13Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78435contigH-elongata_contig78435:1368..2889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.1
Seed ortholog evalue3.1e-64
Seed eggNOG ortholog2880.D7G6W9
Preferred nameRPL13A
KEGG rclassRC01978
KEGG koko:K02872,ko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,ko03010,map00785,map01100,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002237,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008407,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010243,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016477,GO:0017148,GO:0019222,GO:0019439,GO:0019538,GO:0022416,GO:0022625,GO:0022626,GO:0023052,GO:0030323,GO:0030324,GO:0030595,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0035295,GO:0040011,GO:0042221,GO:0042330,GO:0042592,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045087,GO:0045184,GO:0045947,GO:0046483,GO:0046683,GO:0046700,GO:0046907,GO:0048246,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0050900,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051591,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060326,GO:0060425,GO:0060541,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070972,GO:0071214,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071493,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097452,GO:0097529,GO:0104004,GO:1901193,GO:1901194,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1904688,GO:1904689,GO:1905517,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
EggNOG free text desc.Belongs to the universal ribosomal protein uL13 family
EggNOG OGsCOG0102@1,KOG3204@2759
EC2.8.1.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L13, eukaryotic/archaeal
Ec32 orthologEc-01_011950.1
Exons4
Model size465
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78435.15512.1prot_H-elongata_contig78435.15512.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78435 1368..2862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931188.9983466-CDS-H-elongata_contig78435:1367..14961622931188.9983466-CDS-H-elongata_contig78435:1367..1496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78435 1368..1496 -
1691679734.3096216-CDS-H-elongata_contig78435:1367..14961691679734.3096216-CDS-H-elongata_contig78435:1367..1496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78435 1368..1496 -
1622931189.026355-CDS-H-elongata_contig78435:2016..21781622931189.026355-CDS-H-elongata_contig78435:2016..2178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78435 2017..2178 -
1691679734.3227048-CDS-H-elongata_contig78435:2016..21781691679734.3227048-CDS-H-elongata_contig78435:2016..2178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78435 2017..2178 -
1622931189.0474043-CDS-H-elongata_contig78435:2452..25121622931189.0474043-CDS-H-elongata_contig78435:2452..2512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78435 2453..2512 -
1691679734.3309433-CDS-H-elongata_contig78435:2452..25121691679734.3309433-CDS-H-elongata_contig78435:2452..2512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78435 2453..2512 -
1622931189.0761786-CDS-H-elongata_contig78435:2775..28621622931189.0761786-CDS-H-elongata_contig78435:2775..2862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78435 2776..2862 -
1691679734.3425627-CDS-H-elongata_contig78435:2775..28621691679734.3425627-CDS-H-elongata_contig78435:2775..2862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78435 2776..2862 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.0944414-UTR-H-elongata_contig78435:2862..28891622931189.0944414-UTR-H-elongata_contig78435:2862..2889Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78435 2863..2889 -
1691679734.3527994-UTR-H-elongata_contig78435:2862..28891691679734.3527994-UTR-H-elongata_contig78435:2862..2889Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78435 2863..2889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78435.15512.1

>prot_H-elongata_contig78435.15512.1 ID=prot_H-elongata_contig78435.15512.1|Name=mRNA_H-elongata_contig78435.15512.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSC
FEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIK
RLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF*
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mRNA from alignment at H-elongata_contig78435:1368..2889-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78435.15512.1 ID=mRNA_H-elongata_contig78435.15512.1|Name=mRNA_H-elongata_contig78435.15512.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1522bp|location=Sequence derived from alignment at H-elongata_contig78435:1368..2889- (Himanthalia elongata Himel1 dioecious)
TCAGTTGTCCGCAACAAGGTTAAGTACATGCAGTTCAAAAAGAAGAGGCA CAACACCAACCCAAGCCGCGGTCCCTACCACTTCCGCTCTCCCTCGAAAA TCTTCTGGCGGACGGTGAGCCGGCGTCAGTTCATGCTGCCTGGGATTTGT ACGGTAGTACGGAAACGTCGCCCCAATATATGTTCAGTTTTCGACCACGC ATAAAGGAATTTCGAATTTCGTCCCAACCCTTCACGACGCTCGCTAGAGC AAAATAAGTTGAAGTTAAGTTGCTATTTTTTTAGGGTCTAATATCGCGCA ATCCGTTCTTTAACATTTAGACTTTAATATCGCTCTAATAGCTTTGCGTA ATCCTATTCTCGGGCGATCAACTTCAGGTCCGCGGTATGCTTCCTCATAA GACAGAGAGGGGACAGGAGGCGCTCAAGCGTCTGTCGGTGAGAAACCACC CCCACAATCTCGCTGTCGCACTTGACAAGAAGAGGTGATTTTAGAGAGTA AGGCGTTTACCTTTGTGATGGCTTTAGCTTGAGGATCCTGCTATAAACAG CTTGAGGAAGGTGCGGCACACGTGCCAAAGTGGTTATCTCGCTTGCTACC TCTGGCGAAGTGAACCTGACGCGATTCTTGTTCATATACTGTTAATCTAT ACTTTTAAGTTGTTGACCTCTTGTTCCCCCTTCCGTCAAATGTCGCATAC ACGATCGGCAGTGCTTCGAGGGCATCCCGGAGCCCTTCGACAAGAAGAAG CGCATGGTAGTGCCGAACGCGCTTCAGGTCATCAGGATAGCGCCTGGTCG CCGCTTCTGCGTGCTCGGGCGCCTCTCGACTGAGGTGGGATGGCCACACG GGGACCTCATCAAGCGGCTCGAGGTGAGAGCACGTATCTATACTTGTCTT AATCCAATATTCGAACTATTGTGTGACTTCTTGTCGGAAGACAAGACTAC CCTACATTAAATTTTTTTACCCCCTATGGAACCTCAATATAAAACTTTAT ATCCAGTTCTAAACGGGTTAAACCGTTAAACCATTAAACCATTTACATTC GCTGGCAATGAAAAGGCGGTGAAAGTTACTGTTTCCTTATTTGATCAATA ACCTCTGATTTCGTGTACGAAATTCATGCGAGGTTTGTTTATTATACACA CCGAGAGAAGCTCTCCAATTCTTTGACTCATCTCATGATGTCATGATTGC ACCATGTATTGTCACCACGTCGCTATCTACGACTCACGAACGAACGAAAT GGTGGTTTCGTCCTACAGTGGTATGGTGGTATTGCCACCCAATATACGAC TTGTTATTTTCTAGTAACCATCGAGACTAGATTATTCCACGACATTTGCC TCGTCAATAGCAATAGCGCCGCATTTCTCGCGTTACATTGCAGGCCCAGC GCAAGGTAAAGTCCGAGGCGTACTATGTGGACAAGAAGGCGAACAAGCGG ATCAAGGAAACGGCTGAAGCCCAGGCGGATTTATCTTCCGTTACGCCCGT CCTCGAGGAGTTCGGCTTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig78435:1368..2889-

>mRNA_H-elongata_contig78435.15512.1 ID=mRNA_H-elongata_contig78435.15512.1|Name=mRNA_H-elongata_contig78435.15512.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig78435:1368..2889- (Himanthalia elongata Himel1 dioecious)
ATGCAGTTCAAAAAGAAGAGGCACAACACCAACCCAAGCCGCGGTCCCTA
CCACTTCCGCTCTCCCTCGAAAATCTTCTGGCGGACGATGCAGTTCAAAA
AGAAGAGGCACAACACCAACCCAAGCCGCGGTCCCTACCACTTCCGCTCT
CCCTCGAAAATCTTCTGGCGGACGGTCCGCGGTATGCTTCCTCATAAGAC
AGAGAGGGGACAGGAGGCGCTCAAGCGTCTGTCGGTCCGCGGTATGCTTC
CTCATAAGACAGAGAGGGGACAGGAGGCGCTCAAGCGTCTGTCGTGCTTC
GAGGGCATCCCGGAGCCCTTCGACAAGAAGAAGCGCATGGTAGTGCCGAA
CGCGCTTCAGGTCATCAGGATAGCGCCTGGTCGCCGCTTCTGCGTGCTCG
GGCGCCTCTCGACTGAGGTGGGATGGCCACACGGGGACCTCATCAAGCGG
CTCGAGTGCTTCGAGGGCATCCCGGAGCCCTTCGACAAGAAGAAGCGCAT
GGTAGTGCCGAACGCGCTTCAGGTCATCAGGATAGCGCCTGGTCGCCGCT
TCTGCGTGCTCGGGCGCCTCTCGACTGAGGTGGGATGGCCACACGGGGAC
CTCATCAAGCGGCTCGAGGCCCAGCGCAAGGTAAAGTCCGAGGCGTACTA
TGTGGACAAGAAGGCGAACAAGCGGATCAAGGAAACGGCTGAAGCCCAGG
CGGATTTATCTTCCGTTACGCCCGTCCTCGAGGAGTTCGGCTTCTAAGCC
CAGCGCAAGGTAAAGTCCGAGGCGTACTATGTGGACAAGAAGGCGAACAA
GCGGATCAAGGAAACGGCTGAAGCCCAGGCGGATTTATCTTCCGTTACGC
CCGTCCTCGAGGAGTTCGGCTTCTAA
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