mRNA_H-elongata_contig100144.16.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100144.16.1
Unique NamemRNA_H-elongata_contig100144.16.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: UPI001E672EAC (RNA-binding protein cabeza-like isoform X7 n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E672EAC)

HSP 1 Score: 69.7 bits (169), Expect = 6.440e-12
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  139 GGWADSYARSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315
            GGW D Y+   R S R+  KPGDWDCPSCQF NFASR  C++C+   P+  D++  G R
Sbjct:   64 GGW-DRYSDQDRYSSRSSSKPGDWDCPSCQFSNFASRTACFKCR--TPKDGDSFGSGGR 119          
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A0P4WHM5_SCYOL (Uncharacterized protein n=2 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4WHM5_SCYOL)

HSP 1 Score: 65.9 bits (159), Expect = 9.190e-11
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1
Query:  142 GWADSYA-----RSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315
            GW D Y+        R S R+  KPGDWDCPSCQF NFASR  C++C+   P+  D++  G R
Sbjct:   18 GWGDRYSDHDSGSRDRYSSRSNVKPGDWDCPSCQFSNFASRTACFKCR--TPKDGDSFGSGGR 78          
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A0P4WEJ4_SCYOL (Uncharacterized protein n=2 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4WEJ4_SCYOL)

HSP 1 Score: 65.9 bits (159), Expect = 1.970e-10
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1
Query:  142 GWADSYA-----RSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315
            GW D Y+        R S R+  KPGDWDCPSCQF NFASR  C++C+   P+  D++  G R
Sbjct:   18 GWGDRYSDHDSGSRDRYSSRSNVKPGDWDCPSCQFSNFASRTACFKCR--TPKDGDSFGSGGR 78          
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A5B7FD34_PORTR (Zinc finger protein VAR3, chloroplastic n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7FD34_PORTR)

HSP 1 Score: 65.9 bits (159), Expect = 2.550e-10
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1
Query:  142 GWADSYA-----RSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315
            GW D Y+        R S R+  KPGDWDCPSCQF NFASR  C++C+   P+  D++  G R
Sbjct:   18 GWGDRYSDHDSGSRDRYSSRSNVKPGDWDCPSCQFSNFASRTACFKCR--TPKDGDSFGSGGR 78          
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: UPI001C48D0E0 (RNA-binding protein cabeza-like isoform X6 n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C48D0E0)

HSP 1 Score: 65.1 bits (157), Expect = 3.990e-10
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1
Query:  139 GGW----ADSYARSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315
            GGW     DS +R  R S R+  KPGDWDCPSCQF NFASR  C++C+   P+  D++  G R
Sbjct:   58 GGWDRYSEDSGSRD-RYSSRSSSKPGDWDCPSCQFSNFASRTACFKCR--TPKDGDSFGSGGR 117          
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: UPI001E1CCFA7 (E3 SUMO-protein ligase RanBP2-like isoform X1 n=4 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CCFA7)

HSP 1 Score: 65.9 bits (159), Expect = 5.830e-10
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1
Query:  142 GWADSYA-----RSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315
            GW D Y+        R S R+  KPGDWDCPSCQF NFASR  C++C+   P+  D++  G R
Sbjct:  139 GWGDRYSDHDSGSRDRYSSRSNVKPGDWDCPSCQFSNFASRTACFKCR--TPKDGDSFGSGGR 199          
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A8J5CL53_CHIOP (Tyrosine--tRNA ligase n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J5CL53_CHIOP)

HSP 1 Score: 65.1 bits (157), Expect = 1.450e-9
Identity = 37/95 (38.95%), Postives = 44/95 (46.32%), Query Frame = 1
Query:    4 CSLHVFAFRQACPRCNTAKDNDRTDLEGEGGGGWEGHGTSQPGATGGWADSYARSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRG 288
            C    FA R AC +C T KD D             G+G S  G+  G            +RN   PGDW CP CQFHNF+SR +CY+C   R  G
Sbjct:  552 CQFSNFASRTACFKCRTPKDGD------------SGNGDSGFGS--GXRXXXXXXXXXXMRNM-LPGDWICPKCQFHNFSSRGMCYKCNSPRAEG 631          
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A8H7Q4G1_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q4G1_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 2.680e-9
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1
Query:  184 RNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRP 282
            R  H+PGDWDCP+C FHNFASRH C++C  + P
Sbjct:  419 RTSHRPGDWDCPNCYFHNFASRHHCFKCNAENP 451          
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A3R7PJD3_PENVA (tRNA-guanine transglycosylase n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7PJD3_PENVA)

HSP 1 Score: 60.8 bits (146), Expect = 4.780e-9
Identity = 34/89 (38.20%), Postives = 48/89 (53.93%), Query Frame = 1
Query:   58 KDNDRTDLEGEG---GGGWEGHGTSQPGATGGWADSYARSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315
            +D+ R D  GE     GGW+ +     G      D Y+    +  RN  KPGDWDCPSC+F N+ASR  C +C+   P+ +D++  G R
Sbjct:    2 EDSGRDDWGGESEQDAGGWDRYSDKDSGR-----DRYS----SGGRNSRKPGDWDCPSCKFINYASRTACLKCR--IPKDMDSFGSGGR 79          
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A8H7PJ54_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PJ54_MORIS)

HSP 1 Score: 63.2 bits (152), Expect = 6.800e-9
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1
Query:  184 RNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRP 282
            R QH+PGDWDCP+C FHNFASR  C++C  + P
Sbjct:  418 RTQHRPGDWDCPNCSFHNFASRKHCFKCNAENP 450          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E672EAC6.440e-1252.54RNA-binding protein cabeza-like isoform X7 n=1 Tax... [more]
A0A0P4WHM5_SCYOL9.190e-1147.62Uncharacterized protein n=2 Tax=Scylla olivacea Ta... [more]
A0A0P4WEJ4_SCYOL1.970e-1047.62Uncharacterized protein n=2 Tax=Scylla olivacea Ta... [more]
A0A5B7FD34_PORTR2.550e-1047.62Zinc finger protein VAR3, chloroplastic n=1 Tax=Po... [more]
UPI001C48D0E03.990e-1050.79RNA-binding protein cabeza-like isoform X6 n=1 Tax... [more]
UPI001E1CCFA75.830e-1047.62E3 SUMO-protein ligase RanBP2-like isoform X1 n=4 ... [more]
A0A8J5CL53_CHIOP1.450e-938.95Tyrosine--tRNA ligase n=1 Tax=Chionoecetes opilio ... [more]
A0A8H7Q4G1_9FUNG2.680e-963.64Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A3R7PJD3_PENVA4.780e-938.20tRNA-guanine transglycosylase n=1 Tax=Penaeus vann... [more]
A0A8H7PJ54_MORIS6.800e-963.64Uncharacterized protein n=1 Tax=Mortierella isabel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100144contigH-elongata_contig100144:324..740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.1
Seed ortholog evalue9.6e-07
Seed eggNOG ortholog225117.XP_009334764.1
KEGG rclassRC00063
KEGG koko:K15407
KEGG ReactionR03789,R10209
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0097159,GO:1901363
EggNOG free text desc.RNA-binding protein
EggNOG OGs37UMT@33090,3GIMS@35493,KOG4198@1,KOG4198@2759
EC2.4.2.29
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-26_000810.1
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.871712-CDS-H-elongata_contig100144:323..7401622929543.871712-CDS-H-elongata_contig100144:323..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100144 324..740 -
1691679062.3298454-CDS-H-elongata_contig100144:323..7401691679062.3298454-CDS-H-elongata_contig100144:323..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100144 324..740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100144.16.1prot_H-elongata_contig100144.16.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100144 324..740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100144.16.1

>prot_H-elongata_contig100144.16.1 ID=prot_H-elongata_contig100144.16.1|Name=mRNA_H-elongata_contig100144.16.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
VCSLHVFAFRQACPRCNTAKDNDRTDLEGEGGGGWEGHGTSQPGATGGWA
DSYARSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAY
AIGERGTASTYPAQYKPGDWECPSCKAHNYASRQECFRC
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mRNA from alignment at H-elongata_contig100144:324..740-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100144.16.1 ID=mRNA_H-elongata_contig100144.16.1|Name=mRNA_H-elongata_contig100144.16.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig100144:324..740- (Himanthalia elongata Himel1 dioecious)
GTTTGCAGCCTTCACGTGTTCGCCTTTCGCCAAGCTTGCCCGCGGTGCAA CACGGCGAAGGACAATGATCGCACCGATCTCGAGGGCGAAGGAGGAGGAG GCTGGGAGGGCCACGGCACAAGCCAGCCCGGCGCAACGGGGGGCTGGGCC GACTCCTACGCACGCTCGCCGAGGGCGAGCGTGCGCAATCAACATAAACC CGGAGACTGGGATTGCCCGTCGTGCCAGTTCCACAACTTCGCGAGTCGCC ATGTGTGCTACCGCTGCAAGGGAGACCGGCCGCGGGGAGTTGACGCCTAC GCGATAGGGGAGCGGGGCACAGCAAGCACTTACCCGGCCCAGTACAAACC GGGGGACTGGGAATGTCCGTCTTGCAAGGCTCACAACTACGCCAGCCGTC AAGAGTGTTTCCGCTGC
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Coding sequence (CDS) from alignment at H-elongata_contig100144:324..740-

>mRNA_H-elongata_contig100144.16.1 ID=mRNA_H-elongata_contig100144.16.1|Name=mRNA_H-elongata_contig100144.16.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig100144:324..740- (Himanthalia elongata Himel1 dioecious)
GTTTGCAGCCTTCACGTGTTCGCCTTTCGCCAAGCTTGCCCGCGGTGCAA
CACGGCGAAGGACAATGATCGCACCGATCTCGAGGGCGAAGGAGGAGGAG
GCTGGGAGGGCCACGGCACAAGCCAGCCCGGCGCAACGGGGGGCTGGGCC
GACTCCTACGCACGCTCGCCGAGGGCGAGCGTGCGCAATCAACATAAACC
CGGAGACTGGGATTGCCCGTCGTGCCAGTTCCACAACTTCGCGAGTCGCC
ATGTGTGCTACCGCTGCAAGGGAGACCGGCCGCGGGGAGTTGACGCCTAC
GCGATAGGGGAGCGGGGCACAGCAAGCACTTACCCGGCCCAGTACAAACC
GGGGGACTGGGAATGTCCGTCTTGCAAGGCTCACAACTACGCCAGCCGTC
AAGAGTGTTTCCGCTGCGTTTGCAGCCTTCACGTGTTCGCCTTTCGCCAA
GCTTGCCCGCGGTGCAACACGGCGAAGGACAATGATCGCACCGATCTCGA
GGGCGAAGGAGGAGGAGGCTGGGAGGGCCACGGCACAAGCCAGCCCGGCG
CAACGGGGGGCTGGGCCGACTCCTACGCACGCTCGCCGAGGGCGAGCGTG
CGCAATCAACATAAACCCGGAGACTGGGATTGCCCGTCGTGCCAGTTCCA
CAACTTCGCGAGTCGCCATGTGTGCTACCGCTGCAAGGGAGACCGGCCGC
GGGGAGTTGACGCCTACGCGATAGGGGAGCGGGGCACAGCAAGCACTTAC
CCGGCCCAGTACAAACCGGGGGACTGGGAATGTCCGTCTTGCAAGGCTCA
CAACTACGCCAGCCGTCAAGAGTGTTTCCGCTGC
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