mRNA_H-elongata_contig78314.15499.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78314.15499.1
Unique NamemRNA_H-elongata_contig78314.15499.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78314.15499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78314contigH-elongata_contig78314:2226..2638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size415
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.810411-CDS-H-elongata_contig78314:2225..25371622931187.810411-CDS-H-elongata_contig78314:2225..2537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78314 2226..2537 +
1691679733.8427942-CDS-H-elongata_contig78314:2225..25371691679733.8427942-CDS-H-elongata_contig78314:2225..2537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78314 2226..2537 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.826247-UTR-H-elongata_contig78314:2537..26381622931187.826247-UTR-H-elongata_contig78314:2537..2638Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78314 2538..2638 +
1691679733.8524778-UTR-H-elongata_contig78314:2537..26381691679733.8524778-UTR-H-elongata_contig78314:2537..2638Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78314 2538..2638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78314.15499.1prot_H-elongata_contig78314.15499.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78314 2226..2537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78314.15499.1

>prot_H-elongata_contig78314.15499.1 ID=prot_H-elongata_contig78314.15499.1|Name=mRNA_H-elongata_contig78314.15499.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
GTRALHPAVPCARGSRESHEGRSIVSVTRLKPREAVEVVASVGPSPPAKA
SPSDDTKQDRTQCSGRDRCQQAVCVCVCVPAYPSTQPRARALGLQVLFLP
TLI*
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mRNA from alignment at H-elongata_contig78314:2226..2638+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78314.15499.1 ID=mRNA_H-elongata_contig78314.15499.1|Name=mRNA_H-elongata_contig78314.15499.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=413bp|location=Sequence derived from alignment at H-elongata_contig78314:2226..2638+ (Himanthalia elongata Himel1 dioecious)
GGTACCAGGGCGCTGCACCCAGCGGTACCGTGCGCGCGAGGCTCCAGGGA
ATCGCACGAAGGTCGGTCAATCGTTTCAGTCACTCGGTTAAAGCCCCGAG
AGGCCGTCGAGGTCGTCGCGTCCGTGGGACCTTCTCCCCCTGCCAAGGCG
TCACCTTCTGATGACACTAAACAAGATCGAACACAGTGCAGCGGCCGTGA
TCGTTGCCAGCAAGCTGTGTGTGTGTGTGTTTGTGTCCCCGCATATCCCT
CAACACAACCACGAGCGCGTGCACTGGGGCTACAAGTGTTGTTCTTACCC
ACCCTAATTTGATCACATGATGTCATTCAATTATATCCCCACGATAGTGC
AAGTTGTCGTACAGGACGTCGTAGAACGAGGGTTGATTAAATGCGCCTCA
TATAATTCAAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig78314:2226..2638+

>mRNA_H-elongata_contig78314.15499.1 ID=mRNA_H-elongata_contig78314.15499.1|Name=mRNA_H-elongata_contig78314.15499.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig78314:2226..2638+ (Himanthalia elongata Himel1 dioecious)
GGTACCAGGGCGCTGCACCCAGCGGTACCGTGCGCGCGAGGCTCCAGGGA
ATCGCACGAAGGTCGGTCAATCGTTTCAGTCACTCGGTTAAAGCCCCGAG
AGGCCGTCGAGGTCGTCGCGTCCGTGGGACCTTCTCCCCCTGCCAAGGCG
TCACCTTCTGATGACACTAAACAAGATCGAACACAGTGCAGCGGCCGTGA
TCGTTGCCAGCAAGCTGTGTGTGTGTGTGTTTGTGTCCCCGCATATCCCT
CAACACAACCACGAGCGCGTGCACTGGGGCTACAAGTGTTGTTCTTACCC
ACCCTAATTTGAGGTACCAGGGCGCTGCACCCAGCGGTACCGTGCGCGCG
AGGCTCCAGGGAATCGCACGAAGGTCGGTCAATCGTTTCAGTCACTCGGT
TAAAGCCCCGAGAGGCCGTCGAGGTCGTCGCGTCCGTGGGACCTTCTCCC
CCTGCCAAGGCGTCACCTTCTGATGACACTAAACAAGATCGAACACAGTG
CAGCGGCCGTGATCGTTGCCAGCAAGCTGTGTGTGTGTGTGTTTGTGTCC
CCGCATATCCCTCAACACAACCACGAGCGCGTGCACTGGGGCTACAAGTG
TTGTTCTTACCCACCCTAATTTGA
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