mRNA_H-elongata_contig7824.15495.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7824.15495.1
Unique NamemRNA_H-elongata_contig7824.15495.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7824.15495.1 vs. uniprot
Match: D8LT14_ECTSI (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT14_ECTSI)

HSP 1 Score: 509 bits (1310), Expect = 1.660e-160
Identity = 302/691 (43.70%), Postives = 414/691 (59.91%), Query Frame = 1
Query:  121 GTWVVNEVSCPEVEDLMEAFKSMSTVIKAANMNLRSGDLAVAEQNYIDALIIFKKLANDRGVAIANNNLGTLHTLQAQELEYKASLVHESNSTEGRQLSEAIDHLYGDAIVNYQLAISDAEMLCAAVTP--QDDGRSRVLADSISAGKTESKTKDFKSEXXXXXXXXXXXENALAVSPDVRIEGP---------------AIKREMDESTSNAAALFLQLSHRKFNLAVCLLAKANSA-PSKKEPDAKGIDQARQLLINCIRLTSKIKDEAGDEWRAKCLLELANLERAAHNRCQEASEALDAAERVIDPYRGVKG--------------------DLKEGTPRFSLAVVLPQRLLAAFGANRLATGDTVAAINFWTRAIIGSGDKMDVGAVESSLVGLRRLARSRQDRGHFPSELLMALGLSN---EGGVGVRSLVSAIDGALVKV----RKSSTQRKGRQTIDVDLCFVMDCTGSMQPWVDQAKNKLTAIIEEAKKEGTVRKLRVAFVGYRDYGYIVRYEGPYDFHTEQELPALLVKIKNINTRVCPTTSNDLPEDAAGGLFHATNFSWSSPVRLCTVIADMPCHGREYHNLSDNYPDGCPSGQDPAKLLDKLQHDLGVDIYFVKITDNTDKMIAVLQDKLSSFKASRQEDKSRDLREPSNADPAFKVHDLGSDDNQFLEIMVESVKES 2058
            GTW+VN+V+ PEVE+LM AF++M+TV+K AN+ +  GD+ VA+QNYI+A ++F KL N+RGV I +NNLG+++TLQA+E   +A+   E++  +   L E  D  + DA+ NYQ+AI DA +LCA      +DD  +  + D  + G       +FK             E    V+   RI                  ++ R   ++ ++A AL LQL++RK NLA+CL  K  S  P  + PD   ++ AR+LL  C  L +   D  GD+   +CLLE+A LER A  R +EA EALD A+RV+   +GV G                       EG    +    L Q++L A G + +A+G    AI  WT A++G GD+MDV AV  +L+GLR+LA +      FP  L+ ALG S+      VGV  LV+A+D AL K+    +KS T     +   VDLCFVMDCT SMQ W++QA++KL  IIE+AKK+    +LRVAFVGYRD+G   R EGPYDFHTE ++P LL K+  I      T   D+PED AGGL +AT  SW SP+RLC +IAD PCHG  YH+  DNYP GCP G DP+KLL KLQ++LGVD YFV+IT  TDKMI+VLQ+ ++ + + R   + R L+  +N +P F VHDLG +D++FL+I+VESVK S
Sbjct:  370 GTWIVNDVTSPEVEELMTAFQAMTTVVKFANIRVNHGDIDVAQQNYIEAKVLFLKLGNERGVGIVHNNLGSVYTLQAREFAKQAAA--ETDKAKADLLMEKADEKFYDAVTNYQVAIDDAFLLCAGQDQIHEDDSDNGGIDDYANRGG------EFKEGQPRQSGSRPDVEQGSGVAGGSRIMSNHGYRHVSARRASSTYSVSRLSLDNPNSALALDLQLANRKLNLALCLATKGFSGVPLGRPPDLNAVNHARRLLNECATLAANRNDPKGDQRHVECLLEVAKLERQA-GRSKEAFEALDTAQRVVMDSQGVGGAGSAHRTAGLGNPVSIGIAVPPPEGVSLSAPLAALRQQVLVARGEHCVASGKPNEAIEHWTDAVVGCGDRMDVVAVRGALMGLRKLAENGLK---FPKTLMDALGFSDLEPNRTVGVDQLVAAVDEALAKLDSVAKKSGTAVPAVEATKVDLCFVMDCTRSMQSWIEQARSKLIDIIEQAKKDVDNLELRVAFVGYRDFGDKERCEGPYDFHTEDKIPQLLEKLNRIKA----TGGKDVPEDIAGGLQNATQLSWESPIRLCMLIADAPCHGSMYHSCRDNYPTGCPKGLDPSKLLYKLQYELGVDFYFVRITGITDKMISVLQNTVTGYTSDRNHARRRPLKGTANTEPKFMVHDLGCNDHRFLDIVVESVKAS 1044          
BLAST of mRNA_H-elongata_contig7824.15495.1 vs. uniprot
Match: D8LT13_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT13_ECTSI)

HSP 1 Score: 444 bits (1143), Expect = 1.480e-136
Identity = 291/677 (42.98%), Postives = 386/677 (57.02%), Query Frame = 1
Query:  112 QRVGTWVVNEVSCPEVEDLMEAFKSMSTVIKAANMNLRSGDLAVAEQNYIDALIIFKKLANDRGVAIANNNLGTLHTLQAQELEYKASLVHESNSTEGRQLSEAIDHLYGDAIVNYQLAISDAEMLCAAVTPQDDGRSRVLADSISAGKTESKTKDFKSEXXXXXXXXXXXENALAVSPDVRIEGPAIKREMDESTSNAAALFLQLSHRKFNLAVCLLAKANSAPSKK-EPDAKGIDQARQLLINCIRLTSKIKDEAG---------DEWRAKCLLELANLERAAHNRCQEASEALDAAERVIDPYRGVKGDLKEGTPRFSLAV-------VLPQRLLAAFGANRLATGDTVAAINFWTRAIIGSGDKMDVGAVESSLVGLRRLARSRQDRGHFPSELLMALGLSNEGGVGVRSLVSAIDGALVKVRKSSTQRKGRQT-----IDVDLCFVMDCTGSMQPWVDQAKNKLTAIIEEAKKEGTVRKLRVAFVGYRDYGYIVRYEGPYDFHTEQELPALLVKIKNINTRVCPTTSNDLPEDAAGGLFHATNFSWSSPVRLCTVIADMPCHGREYH-NLSDNYPDGCPSGQDPAKLLDKLQHDLGVDIYFVKITDNTDKMIAVLQDKLSS-FKASRQEDKSRD-LREPSNADPAFKVHDLGSDDNQFLEIMVESVKESVDR 2067
            Q  G  +VN +SCPEVE+LMEA  +M+TV+K A   L +G++A A+  Y +AL +F    ND GV+I  NNLG  + ++A+EL   A    E N  + + L E     + DA +NY++AI DAEMLCAA   + +G S +   +   G        F+ +           E A A   DV           D+   + AAL  QL+ RKFNLA+C  AK NSA S   +PD + I++AR L+  CI+LTS   +  G         D  R + LL+LA LER    R +EA EALDAAE VI PY     D   G P  ++A        +L QRLL    A+ +A+G+   AI  +T+A+IG+GD +D+    +SL GLR LA        F  +LL+ALGL  +       L SAID  L KV+ + T+ +  Q        +DLCFVMDCTGSMQ W+DQAK KL  II +A+K+     LRVAFVGYRD+G  VRYE  +DFH E++LP LL K+  I         +D PED AGGL  AT   W   +RLC +IAD PCHG  YH  + D YP+GCP G DP+KLL KLQ+++G D YF++IT+ TD+MI VLQ++  + F  SR    SR  LR     D    VHDL S+DN+FLE++VESV +SV R
Sbjct:  357 QVAGPHMVNRISCPEVEELMEAAPAMNTVVKFATTTLATGNIAAAKVIYREALTLFTIRCNDSGVSIVRNNLGNAYAMEAEELVAHAK--DEENPAQTKTLMEKAKECFADAEINYKVAIEDAEMLCAATLHRPNGASPLHRGAHHGGHDGVDEAKFEEDV----------EAARAARADVDAND-------DDENMSHAALCRQLAVRKFNLALCTEAKGNSAVSTGGQPDLEIINEARNLIQQCIQLTSAGGNIGGNRNKGNTKNDLQRFRYLLQLAALERRQQGRSREAWEALDAAELVIVPYENNHPD---GGPGAAMATSLETPVQILRQRLLEERAAHCVASGNHAEAIAHYTQAMIGTGDIIDLSVARASLWGLRGLASDGNYGRLFSPDLLVALGLHPDADTEPEGLTSAIDQGLDKVKTAKTKMEALQDNPSRKTHIDLCFVMDCTGSMQYWIDQAKTKLLDIINQARKDVANINLRVAFVGYRDFGDRVRYE-LFDFHKEKDLPELLAKLNKIEAY----GGDDFPEDVAGGLKLATELDWRGTIRLCILIADAPCHGSIYHAGVGDRYPNGCPKGNDPSKLLYKLQYEIGADFYFIRITEVTDRMIRVLQNRAGNMFAESRTHPSSRQGLRVAKRRD--IVVHDLSSEDNRFLEVVVESVLDSVWR 1004          
BLAST of mRNA_H-elongata_contig7824.15495.1 vs. uniprot
Match: A0A6H5KL16_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL16_9PHAE)

HSP 1 Score: 427 bits (1099), Expect = 5.800e-129
Identity = 284/666 (42.64%), Postives = 380/666 (57.06%), Query Frame = 1
Query:  136 NEVSCPEVEDLMEAFKSMSTVIKAANMNLRSGDLAVAEQNYIDALIIFKKLANDRGVAIANNNLGTLHTLQAQELEYKASLVHESNSTEGRQLSEAIDHLYGDAIVNYQLAISDAEMLCAAVTPQDDGRSRVLADSISA---GKTESKTKDFKSEXXXXXXXXXXXENALAVSPDVRIEGPAIKREMDESTSNAAALFLQLSHRKFNLAVCLLAKANSAPSKK-EPDAKGIDQARQLLINCIRLTSKIKDEAG---------DEWRAKCLLELANLERAAHNRCQEASEALDAAERVIDPYRGVKGDLKEG----TPRFSLAVVLPQRLLAAFGANRLATGDTVAAINFWTRAIIGSGDKMDVGAVESSLVGLRRLARSRQDRGHFPSELLMALGLSNEGGVGVRSLVSAIDGAL-----VKVRKSSTQRKGRQTIDVDLCFVMDCTGSMQPWVDQAKNKLTAIIEEAKKEGTVRKLRVAFVGYRDYGYIVRYEGPYDFHTEQELPALLVKIKNINTRVCPTTSNDLPEDAAGGLFHATNFSWSSPVRLCTVIADMPCHGREYH-NLSDNYPDGCPSGQDPAKLLDKLQHDLGVDIYFVKITDNTDKMIAVLQDKLSSFKASRQEDKSRDLREPSNADPAF-KVHDLGSDDNQFLEIMVESVKESV 2061
            N++  PEV+DL+EAF+SM+T +K AN  L +G++A A+  Y+DAL +F KL N+RG+ I  NNLG +  ++A EL  +A      N  + + L EA    + DA +N++LAI DAEMLCAA   Q +G   VL    SA   G+       F+ +           E A A   DV         + D+  ++ AAL  QL+ RK NLA C  A+ NSA +   +PD + I++AR LL  CI+LTS   +  G         D  R   LL+L+ LER    R Q+A EALDAAE VI PY     D   G    TP  +   +L QRLL A  A  +A G    AI+ +T+A+IG+GD +D     +SL+GLR LA        F SELL+AL L    G     L SAID  L     VK R ++ +    +  DVDLCFVMDCTGSMQ W+DQA+ +L  II++AKK+     LRVAFVGYRD+G  V+YE  +DFH E +LP L  K+  I          D PED AGGL  AT   W   +RLC ++AD PCHG  YH  + D YP+GCP G DP+KLL +LQ+++G D YF+++T +TDKMI VLQ++  +   S    +    +  S A   +  VHDLGS+DN+FLE++VESV  SV
Sbjct:  492 NDMLSPEVDDLVEAFESMNTAVKFANTTLATGNMAAAKSIYLDALKLFIKLENERGIGIVRNNLGNICAMEAGELVAQARDAR--NPAQAKALMEAALLSFTDAAINFKLAIDDAEMLCAATNHQPNG---VLPQHPSAHHGGRDGVGETKFEEDV----------EAAHAALADVDAN------DDDDDNTSHAALDRQLASRKSNLARCTEARGNSAVATGGKPDLEVINEARNLLQECIQLTSADLNSGGNRSTGDTKNDLQRFGYLLQLSVLERG-QGRFQQAGEALDAAELVIAPYERHSVDAGPGATTATPLETPVHILRQRLLEARAALSVANGYHEEAIDHYTQALIGTGDIIDPSVATASLLGLRGLASVGNYGRLFSSELLVALSLHPGAGKDPECLTSAIDHGLDRVKRVKTRMAAARNDSTRKTDVDLCFVMDCTGSMQRWIDQARTRLLDIIDQAKKDVANINLRVAFVGYRDFGDKVQYE-TFDFHKEHDLPKLRAKLNKIKAY----GGADFPEDVAGGLKLATELDWRGTIRLCILLADAPCHGSMYHIGIGDRYPNGCPKGNDPSKLLYELQYEIGADFYFIRMTRHTDKMIRVLQNRAGAMWDSNGRPRPSSRQGASVAATRYIVVHDLGSEDNRFLEVVVESVNVSV 1130          
BLAST of mRNA_H-elongata_contig7824.15495.1 vs. uniprot
Match: D7FWV2_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV2_ECTSI)

HSP 1 Score: 422 bits (1086), Expect = 2.110e-127
Identity = 276/665 (41.50%), Postives = 375/665 (56.39%), Query Frame = 1
Query:  154 EVEDLMEAFKSMSTVIKAANMNLRSGDLAVAEQNYIDALIIFKKLANDRGVAIANNNLGTLHTLQAQELEYKASLVHESNSTEGRQLSEAIDHLYGDAIVNYQLAISDAEMLCAAVTPQDDGRSRVLADSISAG-KTESKTKDFKSEXXXXXXXXXXXENALAVSPDVRIEGPA---IKREMDESTSNAAALFLQLSHRKFNLAVCLLAKANSAPSKK-EPDAKGIDQARQLLINCIRLTSKIKDEAG---------DEWRAKCLLELANLERAAHNRCQEASEALDAAERVIDPYRGVKGD---LKEGTPRFSLAVVLPQRLLAAFGANRLATGDTVAAINFWTRAIIGSGDKMDVGAVESSLVGLRRLARSRQDRGHFPSELLMALGLSNEGGVGVRSLVSAIDGALVKVRK-----SSTQRKGRQTIDVDLCFVMDCTGSMQPWVDQAKNKLTAIIEEAKKEGTVRKLRVAFVGYRDYGYIVRYEGPYDFHTEQELPALLVKIKNINTRVCPTTSNDLPEDAAGGLFHATNFSWSSPVRLCTVIADMPCHGREYH-NLSDNYPDGCPSGQDPAKLLDKLQHDLGVDIYFVKITDNTDKMIAVLQDKLSSFKASRQEDKSRDLREPSNADPAFK----VHDLGSDDNQFLEIMVESVKESVDR 2067
            ++ D++ +   M    + ANM L +GD+  A+  Y+ AL +F KL NDRGV I NNNLG L+ LQA +   KA      N  + + L EA    + DA+ NY+LAI+DAEMLCAA   Q +  S +   +   G K   +TK                         V+ EG A   + +  D+   + AAL  QL++RK+NLA+CL AK  SA +   +PD K ID+AR L+  CI+L    +   G         D  R   LL+++ LER    R +EA EALDAAE VI PY     D       TP  +   +L QRLL A  A+ +A+G   AAI+ +T+A+IG+GD +D     +SL+GLR LA        F  +LL+ALG+ ++ G    SL SAID  L +V++     ++ Q   R+   VDLCFVMDCTGSMQ W+DQAK KL  II++AKK+     LRVAFVGYRD+G  V+YE  +DFH E+EL  LL  +     ++      D PED AGGL  AT   W   +RLC ++AD PCHG  YH  + D YP+GCP+G DP+KLL +LQ+++G D YF+++T +TDKMI VL+ K     A    D        +    A K    VHDLGS+DN+FLE++VESVK SV +
Sbjct:  464 QLTDIVHSLNRMDFSRQFANMTLATGDMVAAKVIYVAALALFTKLRNDRGVGIVNNNLGNLYALQAGQFVAKARDAE--NPDQAKALREAAQGSFADAVANYELAINDAEMLCAATNQQPNDASPLHRSAHHGGLKGVDETK---------------------CEEGVKTEGAARADVDKNYDDENMSHAALCRQLANRKYNLALCLAAKGKSAVATGGQPDLKTIDEARNLMQQCIQLAPARQHNGGNPNNGDTKTDLRRFGYLLQVSALEREQPGRSREAGEALDAAELVIVPYERHYPDGAGAATATPLETPVQILRQRLLEARAAHCVASGYHEAAIDHYTQALIGTGDLIDPSVAWASLLGLRGLASDGNYGRLFSPDLLVALGVHSDAGADPESLTSAIDHGLDRVKRIQPSMAAAQHYPREA-KVDLCFVMDCTGSMQRWIDQAKTKLLDIIDQAKKDVKNISLRVAFVGYRDFGDKVQYES-FDFHEEKELSKLLAALN----KIMAYGGKDFPEDLAGGLKLATELDWRGNIRLCILLADAPCHGSIYHIGVGDRYPNGCPNGNDPSKLLYELQYEIGADFYFIRMTQHTDKMIQVLRKKAGDTFA----DAGAHSLAGNGGRAATKRDIVVHDLGSEDNRFLEVVVESVKVSVQQ 1095          
BLAST of mRNA_H-elongata_contig7824.15495.1 vs. uniprot
Match: A0A6H5KWB6_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWB6_9PHAE)

HSP 1 Score: 414 bits (1064), Expect = 9.990e-124
Identity = 279/686 (40.67%), Postives = 380/686 (55.39%), Query Frame = 1
Query:  121 GTWVVNEVSCPEVEDLMEAFKSMSTVIKAANMNLRSGDLAVAEQNYIDALIIFKKLANDRGVAIANNNLGTLHTLQAQELEYKASLVHESN--STEGRQLSEAIDHLYGDAIVNYQLAISDAEMLCA---AVTPQ--DDGRSRVLADSISAGKTESKTKDFKSEXXXXXXXXXXXENALAVSPDVRIEGPAIKREMD------------ESTSNAAALFLQLSHRKFNLAVCLLAKANSAPSKKEPDAKGIDQARQLLINCIR----LTSKIKDEAGDEWRAKCLLELANLERAAHNRCQEASEALDAAERVID-------PYRGVKGDLKEGTPRFSLAVVLPQRLLAAFGANRLATGDTVAAINFWTRAIIGSGDKMDVGAVESSLVGLR-RLARSRQDRGHFPSELLMALGL---SNEGG------VGVRSLVSAIDGALVKVRKSSTQRKGRQTIDVDLCFVMDCTGSMQPWVDQAKNKLTAIIEEAKKEGTVRKLRVAFVGYRDY-GYIVRYEGPYDFHTEQELPALLVKIKNINTRV-CPTTSNDLPEDAAGGLFHATNFSWSSPVRLCTVIADMPCHGREYHNLSDNYPDGCPSGQDPAKLLDKLQHDLGVDIYFVKITDNTDKMIAVLQDKLSSFKASRQEDKSRDLREPSNAD-PAFKVHDLGSDDNQFLEIMVESV 2049
            G W+ NE SCPEVE+LM+AFK+M+ V+K AN  L SGD+  A+QN ++AL +FKKL N RGVAI NNN+G ++TLQA+ L  KA    E+   +   + + +A D  + DA+++++LAI DAEML +    + P+  D  +S  L  + +A   E++ + F+ E           E + A S D+  +  +     D            E   + +AL LQL++RKFNLA+CL AKA     +   D                    L ++  D  G E + + LL LA LE +  +R  EA +AL+ AE +ID       P  G          R +   VL  RLL A G  RLA GD  AA+ FW+ A++G GD MD  AV  SLVGL+  L      +G  P    +A GL   S E G      V    L  AI   + ++  ++ Q      + VDLCFVMDCTGSM  W++QAK KL AIIE+ KK+    +LRVAFVGYRD+ G+  +YEGPYDFH E++LP L  K+K I     C   +     D AGGL HAT  SWSSPVRLC + AD PCHG+ YH++ D YP GCP G DP+ ++ +L H+LGVD YF++I   TDKM+ + Q  +    A +   KS      SN + P F VH+LGSDDN F++ +VESV
Sbjct:  479 GRWMFNESSCPEVEELMDAFKTMTFVVKFANEPLESGDVDAAQQNNMEALTLFKKLKNARGVAIVNNNMGNVYTLQAKVLLEKAGTQRENKHPAAADKTMRQA-DEKFQDAVISFRLAIEDAEMLISWTDQLKPRLADVQKSAPLRLATTARAGENEQEKFEQEHKAG-------EVSRAESLDIEAQDASKNSPTDGENDXXXXXDPAEGPESVSALKLQLANRKFNLALCLAAKATGDGDRLRGDXXXXXXXXXXXXXXXXXXEDLAAERDDAIGTERQVEYLLALAALELSQPDRKHEAIQALERAETIIDAACSQSSPVIGTLAAAAATEARGAPPAVLKCRLLTARGEERLAAGDVEAAVRFWSEAVVG-GDVMDPAAVRQSLVGLQAHLCSVDNGQGLSPYTEALARGLGLASEEEGDAKGVVVSHAELTGAIQAEVKRMGGAAFQVSRSPAVKVDLCFVMDCTGSMGSWINQAKKKLFAIIEQTKKDIANLELRVAFVGYRDFEGHDNQYEGPYDFHAEEQLPQLEAKLKKIRAGGGCGYVA-----DVAGGLKHATTLSWSSPVRLCILFADAPCHGKMYHDVPDQYPKGCPEGVDPSNMIYQL-HELGVDFYFIRIAQVTDKMVDIFQSSVRQM-AVKHGRKSSPSPSFSNTNRPKFVVHNLGSDDNSFVDTVVESV 1148          
BLAST of mRNA_H-elongata_contig7824.15495.1 vs. uniprot
Match: A0A6H5KZ40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ40_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 3.410e-79
Identity = 211/589 (35.82%), Postives = 291/589 (49.41%), Query Frame = 1
Query:  112 QRVGTWVVNEVSCPEVEDLMEAFKSMSTVIKAANMNLRSGDLAVAEQNYIDALIIFKKLANDRGVAIANNNLGTLHTLQAQELEYKASLVHESNSTEGRQLSEAIDHLYGDAIVNYQLAISDAEMLCAAVTPQDDGRSRVLADSISAGKTESKTKDFKSEXXXXXXXXXXXENALAVSPDVRIEGPAIKREMDESTSNAAALFLQLSHRKFNLAVCLLAKANSAPSKK-EPDAKGIDQARQLLINCIRLTSKIKDEAG---------DEWRAKCLLELANLERAAHNRCQEASEALDAAERVIDPYRGVK--GDLKEG--TPRFSLAVVLPQRLLAAFGANRLATGDTVAAINFWTRAIIGSGDKMDVGAVESSLVGLRRLARSRQDRGHFPSELLMALGLSNEGGVGVRSLVSAIDGALVKVRKSSTQRKGRQTIDVDLCFVMDCTGSMQPWVDQAKNKLTAIIEEAKKEGTVRKLRVAFVGYRDYGYIVRYEGPYDFHTEQELPALLVKIKNINTRVCPTTSNDLPEDAAGGLFHATNFSWSSPVRLCTVIADMPCHGREYHN-LSDNYPDGCPSGQDPAKLLDKLQ 1833
            Q  GTW+VN+VS  EVE+LM+AF+ M+TV+K AN  L + ++A A++ Y  A+ +F+KL NDRGV+I NNNLG ++ LQA +   KA    + N  + + L EA      DA+ N++LAI+DAE+LCAA   Q +  S +L  +   G+          E           ++  A   D  +         ++S    AAL  QL +RKF LA+CL AK NS  +   +PD K ID+AR L+  CI LT   +   G         D  R   LL+L+ LER   +R +EA EALDAAE VI PY      G L     TP  +   +L QRLL A  A+ +A+G   AAI+ +T+AIIG+GD +D     +SL+GLR LA S  + G   S  + ++GL++  G G R  +                                         D+ +                         YRD+G  V+YE  +DFH E +L  L  K++ I          D PED AGGL  AT   W   +RLC ++AD PCHG  +H    D +P+ CP G DPAKLL KLQ
Sbjct:   90 QAPGTWMVNDVSSREVEELMDAFEQMTTVVKFANTTLATENIAEAQRIYAGAMALFRKLGNDRGVSIMNNNLGNVYALQAGQFVAKAR--DDVNPAQTKALMEAAQDSVADAVTNHELAINDAEVLCAATNQQPNHASPLLRSAHRGGR----------EGVDETECEEGVKSEGAALADADVNDXXXXXXXNKSH---AALCQQLVNRKFILALCLTAKGNSTVATGGQPDLKTIDEARNLMQQCILLTHVGQHNGGKRNNGDAKTDLRRIGYLLQLSALEREQQDRSREAGEALDAAELVIAPYESFHFAGGLGAAMATPLETPVRILRQRLLEARAAHCVASGFHAAAIDHYTQAIIGTGDLIDPSVARASLLGLRSLA-SDGNYGRL-SRAIGSVGLASWRGRGPRGHILG---------------------------------------DRPR-------------------------YRDFGDSVQYES-FDFHKEYDLHKLTKKLEKIKAY----GGQDFPEDVAGGLKLATELVWRGNIRLCILLADAPCHGNVHHTGAGDMFPNCCPMGNDPAKLLYKLQ 592          
BLAST of mRNA_H-elongata_contig7824.15495.1 vs. uniprot
Match: R1DM21_EMIHU (VWFA domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DM21_EMIHU)

HSP 1 Score: 148 bits (373), Expect = 4.460e-34
Identity = 94/229 (41.05%), Postives = 131/229 (57.21%), Query Frame = 1
Query: 1381 VDLCFVMDCTGSMQPWVDQAKNKLTAIIEEAKKEGTVRKLRVAFVGYRDYGYIVRYEGPYDFHTEQELPALLVKIKNINTRV-CPTTSNDLPEDAAGGLFHATNFSWSSPVRLCTVIADMPCHGREYHN-LSDNYPDGCPSGQDPAKLLDKLQHDLGVDIYFVKITDNTDKMIAVLQDKLSSFKASRQEDKSRDLREPSNADPAFKVHDLGSDDNQFLEIMVESVKESV 2061
            VDLC +MDCT SM P++  AK+K+  ++++A+++  V  LRVAFVGYRDYG+  R+        +  +  L   I +      CP    D+PED AGGL  A   +WSS +++   +AD P HG EYH+ L DN+ DG P   DPA L+ +L  D  V  YF KI  +TDKM+  L++   + K SR+E               FKVH+LGSD N F E+M+ S+  SV
Sbjct:  267 VDLCILMDCTASMGPYIQAAKDKMALVVDQAREKFHV-DLRVAFVGYRDYGHRERFAVKDFVCGDDGIRDLQQFIAHTRASTDCPNGDIDIPEDVAGGLEKALGMTWSSRIKMLVHVADAPAHGSEYHDGLGDNH-DG-PQDPDPAALMTRLG-DKRVAFYFFKINSSTDKMVGKLRE---AHKNSRRE---------------FKVHELGSDVNMFAEMMLGSIASSV 473          
BLAST of mRNA_H-elongata_contig7824.15495.1 vs. uniprot
Match: Q559D6_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q559D6_DICDI)

HSP 1 Score: 136 bits (343), Expect = 2.980e-30
Identity = 92/253 (36.36%), Postives = 123/253 (48.62%), Query Frame = 1
Query: 1312 AIDGALVKVRKSSTQRKGRQTIDVDLCFVMDCTGSMQPWVDQAKNKLTAIIEEAKKEGTVRKLRVAFVGYRDYGYIVRYEGPYDFHTEQELPALLVKIKNINTRVCPTTSNDLPEDAAGGLFHATNFSWS-SPVRLCTVIADMPCHGREYHNLSDNYPDGCPSGQDPAKLLDKLQHDLGVDIYFVKITDNTDKMIAVLQDKLSSFKASRQEDKSRDLREPSNADPAFKVHDLGSDDNQFLEIMVESVKESVDR 2067
            A+D A    R    Q K +  + V LC +MDCTGSM  W+ ++K K+ ++           +L  +F+GYRD     R+E    F T+    A       IN  V PT   D PED  G      N SW  +  +L   + D PCHG++YHN  D+YPDG PSG  P KLL KL     +D YF+KIT  TDKMI + +             KS D     +      VHDLGSD ++ L  +V  V+ S+ R
Sbjct:  259 ALDEAESLRRNRLRQEKNKPPM-VQLCLMMDCTGSMGSWIKESKEKIISLTGLLASSYVGLELNASFIGYRDITDSNRFE-VVPFTTDMGYLA-----SKINEAV-PTGGGDTPEDITGAFLQVNNLSWKPTHTKLVVHVGDAPCHGKKYHNCVDSYPDGDPSGLVPEKLLQKLSSK-SIDYYFIKITSQTDKMIEIFR-------------KSYD-----SPQKKIVVHDLGSDVSKLLPSLVNFVQTSITR 484          
BLAST of mRNA_H-elongata_contig7824.15495.1 vs. uniprot
Match: A0A397T9Q4_9GLOM (VWFA domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T9Q4_9GLOM)

HSP 1 Score: 127 bits (318), Expect = 1.750e-29
Identity = 72/179 (40.22%), Postives = 104/179 (58.10%), Query Frame = 1
Query: 1375 IDVDLCFVMDCTGSMQPWVDQAKNKLTAIIEEAKKEGTVRKLRVAFVGYRDYGYIVRYEGPYDFHTEQELPALLVKIKNINTRVCPTTSN--DLPEDAAGGLFHATNFSWSSPVRLCTVIADMPCHGREYHNLSDNYPDGCPSGQDPAKLLDKLQHDLGVDIYFVKITDNTDKMIAVLQ 1905
            ++VDLCFVMDCTGSM+ +++ AKN +  + E   K     K+RV F GYRD+    R +  +DF    +      + KN N    P T    D PED  GGL  A + SW +P+R+   I D P HGR Y+N +D+YPDG P+G     +L++++  +G+  +FVKIT+ T  MI + Q
Sbjct:    1 MEVDLCFVMDCTGSMKGYIEGAKNSIKEVAEYMAKMEPAIKIRVGFCGYRDHHDTNRLQ-IFDFTNSCD------EFKN-NLSNVPATGGGGDGPEDVLGGLNAAVHMSWQNPIRVLLHIGDFPPHGRRYNNAADDYPDGDPNGLTAECVLEEMRS-VGIHYFFVKITNETATMIRIFQ 170          
BLAST of mRNA_H-elongata_contig7824.15495.1 vs. uniprot
Match: A0A397T620_9GLOM (Uncharacterized protein (Fragment) n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T620_9GLOM)

HSP 1 Score: 125 bits (315), Expect = 4.410e-29
Identity = 69/177 (38.98%), Postives = 97/177 (54.80%), Query Frame = 1
Query: 1375 IDVDLCFVMDCTGSMQPWVDQAKNKLTAIIEEAKKEGTVRKLRVAFVGYRDYGYIVRYEGPYDFHTEQELPALLVKIKNINTRVCPTTSNDLPEDAAGGLFHATNFSWSSPVRLCTVIADMPCHGREYHNLSDNYPDGCPSGQDPAKLLDKLQHDLGVDIYFVKITDNTDKMIAVLQ 1905
            ++VDLCFVMDCTGSM   ++ AKN +  + E   K     K+RV F GYRD+         +DF    +      + KN  + V  T   D PED  GGL  A + +W +P R+   I D P HGR +HN+ DNYPDG P+G     +L++++   G+  +F KIT+ T  MI + Q
Sbjct:    1 MEVDLCFVMDCTGSMGGHIEGAKNSIKEVAEYMAKMEPAIKIRVGFCGYRDHCDNHNRLQIFDFTNSCD------EFKNNVSNVSATGGGDSPEDVLGGLNAAVHMTWRNPTRVLLHIGDYPPHGRRFHNIDDNYPDGDPNGLTAECVLEEMKS-AGIHYFFGKITNETATMIRIFQ 170          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7824.15495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT14_ECTSI1.660e-16043.70VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
D8LT13_ECTSI1.480e-13642.98VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KL16_9PHAE5.800e-12942.64VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
D7FWV2_ECTSI2.110e-12741.50VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KWB6_9PHAE9.990e-12440.67VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KZ40_9PHAE3.410e-7935.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
R1DM21_EMIHU4.460e-3441.05VWFA domain-containing protein n=1 Tax=Emiliania h... [more]
Q559D6_DICDI2.980e-3036.36Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A397T9Q4_9GLOM1.750e-2940.22VWFA domain-containing protein n=1 Tax=Glomus cere... [more]
A0A397T620_9GLOM4.410e-2938.98Uncharacterized protein (Fragment) n=1 Tax=Glomus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7824contigH-elongata_contig7824:2415..6173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score488.8
Seed ortholog evalue3.9e-135
Seed eggNOG ortholog2880.D8LT14
EggNOG free text desc.von Willebrand factor (vWF) type A domain
EggNOG OGs2DNG0@1,2S673@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size2938
Cds size1923
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.4386654-UTR-H-elongata_contig7824:2414..32611622931187.4386654-UTR-H-elongata_contig7824:2414..3261Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7824 2415..3261 -
1691679733.6895304-UTR-H-elongata_contig7824:2414..32611691679733.6895304-UTR-H-elongata_contig7824:2414..3261Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7824 2415..3261 -
1622931187.5639055-UTR-H-elongata_contig7824:6005..61731622931187.5639055-UTR-H-elongata_contig7824:6005..6173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7824 6006..6173 -
1691679733.75411-UTR-H-elongata_contig7824:6005..61731691679733.75411-UTR-H-elongata_contig7824:6005..6173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7824 6006..6173 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.456787-CDS-H-elongata_contig7824:3261..35191622931187.456787-CDS-H-elongata_contig7824:3261..3519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7824 3262..3519 -
1691679733.7026472-CDS-H-elongata_contig7824:3261..35191691679733.7026472-CDS-H-elongata_contig7824:3261..3519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7824 3262..3519 -
1622931187.47452-CDS-H-elongata_contig7824:3691..40071622931187.47452-CDS-H-elongata_contig7824:3691..4007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7824 3692..4007 -
1691679733.716294-CDS-H-elongata_contig7824:3691..40071691679733.716294-CDS-H-elongata_contig7824:3691..4007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7824 3692..4007 -
1622931187.4907303-CDS-H-elongata_contig7824:4149..42501622931187.4907303-CDS-H-elongata_contig7824:4149..4250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7824 4150..4250 -
1691679733.7270188-CDS-H-elongata_contig7824:4149..42501691679733.7270188-CDS-H-elongata_contig7824:4149..4250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7824 4150..4250 -
1622931187.5321136-CDS-H-elongata_contig7824:4483..55961622931187.5321136-CDS-H-elongata_contig7824:4483..5596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7824 4484..5596 -
1691679733.735266-CDS-H-elongata_contig7824:4483..55961691679733.735266-CDS-H-elongata_contig7824:4483..5596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7824 4484..5596 -
1622931187.5483088-CDS-H-elongata_contig7824:5870..60051622931187.5483088-CDS-H-elongata_contig7824:5870..6005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7824 5871..6005 -
1691679733.745704-CDS-H-elongata_contig7824:5870..60051691679733.745704-CDS-H-elongata_contig7824:5870..6005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7824 5871..6005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7824.15495.1prot_H-elongata_contig7824.15495.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7824 3262..6005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7824.15495.1

>prot_H-elongata_contig7824.15495.1 ID=prot_H-elongata_contig7824.15495.1|Name=mRNA_H-elongata_contig7824.15495.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=641bp
MEAFKSMSTVIKAANMNLRSGDLAVAEQNYIDALIIFKKLANDRGVAIAN
NNLGTLHTLQAQELEYKASLVHESNSTEGRQLSEAIDHLYGDAIVNYQLA
ISDAEMLCAAVTPQDDGRSRVLADSISAGKTESKTKDFKSETKNLESGAK
DLENALAVSPDVRIEGPAIKREMDESTSNAAALFLQLSHRKFNLAVCLLA
KANSAPSKKEPDAKGIDQARQLLINCIRLTSKIKDEAGDEWRAKCLLELA
NLERAAHNRCQEASEALDAAERVIDPYRGVKGDLKEGTPRFSLAVVLPQR
LLAAFGANRLATGDTVAAINFWTRAIIGSGDKMDVGAVESSLVGLRRLAR
SRQDRGHFPSELLMALGLSNEGGVGVRSLVSAIDGALVKVRKSSTQRKGR
QTIDVDLCFVMDCTGSMQPWVDQAKNKLTAIIEEAKKEGTVRKLRVAFVG
YRDYGYIVRYEGPYDFHTEQELPALLVKIKNINTRVCPTTSNDLPEDAAG
GLFHATNFSWSSPVRLCTVIADMPCHGREYHNLSDNYPDGCPSGQDPAKL
LDKLQHDLGVDIYFVKITDNTDKMIAVLQDKLSSFKASRQEDKSRDLREP
SNADPAFKVHDLGSDDNQFLEIMVESVKESVDRLPLILEE*
back to top

mRNA from alignment at H-elongata_contig7824:2415..6173-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7824.15495.1 ID=mRNA_H-elongata_contig7824.15495.1|Name=mRNA_H-elongata_contig7824.15495.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3759bp|location=Sequence derived from alignment at H-elongata_contig7824:2415..6173- (Himanthalia elongata Himel1 dioecious)
CGTAGTCTGGTGCGATTTCCCTTGCGAAGATAGATCCAAGCTGGAGCCCA AGTAATGAAGTCAATTTATTGAAACTACCCTGCCGTTCGTGGATGTGACC ATACTCCTGCGCAGAGGGTCGGGACATGGGTGGTAAATGAGGTGTCATGC CCAGAAGTGGAGGATCTAATGGAGGCGTTCAAGTCCATGAGTACCGTCAT CAAGGCGGCAAATATGAACCTGAGGAGTGGTGACCTAGCGGTCGCGGAGC AGAACTACATCGACGCCCTAATCATATTTAAGAAGCTCGCAAATGACCGA GGGGTGAGGGTGCAGACACCTTTCCCGCTGACGAATTTTATCACTTTGTG AGAGCAGAAGTTGACGTTAGCTTGAGTGCATCACGCTGCCGAAGTAGGAA ACTCTTTAACGTGGTAGGGTGTGCATAAATTATTATAGAGATCTTCGGTT TTATTGTGTTGATAGAGATGCGTTATGCTCATGCAACGGATCAATGGTTA CTACTCTCGCTCAAGGAGTCTTTTTAAGTTCGGCGTTTGCGCCGTCCGCT TCTGTTTTACCCTGCTATCGTTGCTAGGTGGCAATTGCCAACAACAACTT GGGCACTCTCCACACTTTACAAGCCCAGGAGTTAGAATATAAGGCGTCGT TGGTTCATGAAAGCAACAGTACCGAAGGCAGGCAGCTCAGCGAGGCGATC GACCATCTTTACGGTGACGCGATCGTGAACTACCAGCTTGCGATATCTGA CGCCGAGATGCTTTGCGCAGCCGTCACCCCGCAAGACGACGGCCGGTCAC GAGTGCTTGCCGACTCAATCTCTGCGGGTAAGACCGAAAGTAAGACGAAG GACTTCAAAAGTGAGACGAAGAATCTCGAAAGTGGTGCTAAGGACCTTGA AAATGCCTTGGCTGTTTCTCCAGATGTGCGAATCGAGGGCCCCGCCATCA AACGAGAGATGGATGAAAGCACCTCTAACGCCGCCGCCCTTTTCCTCCAA CTCTCTCATCGTAAGTTCAACTTGGCAGTGTGCCTCCTTGCTAAGGCCAA TAGTGCACCCTCAAAGAAAGAACCGGATGCAAAAGGGATCGATCAGGCGC GACAGCTTCTCATCAATTGCATTCGCTTGACAAGCAAAATCAAGGACGAG GCAGGAGATGAATGGCGAGCGAAATGCCTCCTCGAGTTGGCCAATCTCGA GCGCGCTGCGCATAATCGATGTCAAGAGGCTAGTGAGGCGCTCGATGCCG CTGAGCGCGTGATCGACCCCTACCGCGGCGTCAAGGGCGATCTCAAGGAG GGAACACCACGTTTCTCGCTCGCTGTTGTACTCCCGCAACGACTTCTCGC GGCGTTCGGAGCGAATCGGCTAGCCACTGGCGACACGGTGGCAGCAATCA ACTTCTGGACCCGAGCAATAATTGGCAGCGGCGACAAGATGGATGTAGGG GCGGTAGAATCCTCCCTGGTGGGACTTCGCCGTCTCGCTAGGAGCCGGCA AGACAGGGGGCATTTTCCCTCCGAGTTGTTGATGGCATTGGGTCTATCTA ACGAGGGGGGGGTGGGCGTCCGGTCGTTGGTGTCGGCAATTGACGGCGCA TTGGTCAAGGTCAGAAAATCGTCGACGCAAAGAAAGGGGCGACAGACAAT TGATGTTGACCTATGTTTCGTCATGGACTGCACGGGGTCGGTGAGAGCGC TAAAGCAACATGACACTACTCCACGCCCCTCTATAGGGTTTCCTGCCCTT TTCACGAGTCTCCTGTGACCTCTGGGGGGAATGGCGGCAAATCTCGTTGA TATATTTGCTCTTTACAGACTAGTTTGGACCCGAGAAGGATACTGAACGT GCGCGCCCAATATCGTATTGGTGAATCGCCCCTTATTTGTTTTTTTTTCA TTTATTTTGTATGTTGCACTCAGATGCAACCCTGGGTGGATCAAGCCAAG AACAAGCTGACAGCTATAATCGAAGAAGCGAAAAAAGAAGGAACCGTCCG AAAGCTTCGTGTGGCTTTCGTAGGGTGGGTCGGGGCGTCACCGCCAAATT TTCTTTGTCGTGCTTACATATTCGCTCTACATTGATTGACACTTCGCGGA GTTTTCCCGCAATAACTACAACATCTCCCCTAGACTCCGACCGTTTCCCG ATGAATTAACCAGCAGATACCGCGACTACGGATATATTGTGCGATACGAG GGCCCGTACGACTTCCACACGGAACAAGAGCTCCCTGCACTCCTCGTGAA GATTAAGAATATTAACACCCGTGTTTGTCCTACAACATCGAACGATCTCC CAGAGGATGCTGCCGGCGGACTTTTTCACGCCACTAATTTTTCGTGGAGC AGTCCGGTCAGGCTGTGCACAGTGATTGCTGACATGCCTTGCCACGGCCG CGAGTACCACAATCTTTCGGATAATTATCCAGACGGATGCCCTAGTGGCC AGGATCCGGCTAAACTCCTCGATAAGCTGCAGGTACGTCGAGACGCATAC AGCTTATCTGCTTACCCTTGAAAAGTTCGCGCGGTGAACGCTTAAGTAAG ACAAATTTGCTACAGGAACGTGTTTCACTGGAGTCCAGAAGCCCGTGTTA TCTTCATTGTTTACGACCCCCCCCGTTGCTCGATCGTATACCATTCCACA ACAGCACGATCTTGGGGTTGATATTTACTTCGTCAAGATCACAGACAACA CGGATAAGATGATTGCAGTTCTTCAGGACAAACTGTCATCCTTCAAAGCG AGCCGGCAAGAAGATAAATCCCGGGATCTCCGGGAACCATCAAACGCAGA TCCAGCGTTCAAAGTCCACGACCTCGGCTCGGACGACAACCAATTTTTGG AGATAATGGTCGAAAGTGTTAAAGAGAGCGTCGATAGACTGCCGCTAATC CTTGAGGAGTAGCGAAACCTTCGAGAGTGATATGGTAGTATCCGCAAAAC CAGGTCGTGTTATTGTCCCCGATCTACGGACTTTAAACAAACTCGGTATA TGATATCCTTCTATATTCCCAAAAGGTGTAGACTACCATATCGGCTGGGA ATTCGGAAATCCGGGGTTGCTAACGGCTCGTTTTGTTGTCTCGTTCATCT AATTATTTCTAGGTATAGGGCAGAGATAGTGTATCAACATTTTTCCTTTG GTTCTTTGGTGGGAAGTACATTTTACCCGGCTGCGTTGGGCCTATGGCAG GACTCTAGCCACGGCCTGTTCAGATGGCCAACTAACTCGATCACCCAGTT GTTTTGTGGAATCAGTCTTGCAGCGACAATAATATGTCATCACGAGGTTC GAGGCGGGTGGTACTTTGTACCTGGTGGTGCGTTTCAGCTTCAGCTCTCC GGCCGACGCAGGCTTGGACTGAAACTTCTGGGTATATACGAAGGCCGAGC TCTAGATCATTTGTGAGTGATTGCGCGAGACATGGGCTTTCTCGAGCTAC AGTCAATCGTTTGAAAATACCATTAGAGTTAGCACTACCATCATGTCGTG TGCTTATCCTTCTGTTAATGTACCCACGTCAGAGTAATCTCTGTTGGTAG ATCCATGGCTGCGCCAGGTGCCTCCGTAAAAAAATATCGCCATGACTAGT CGGCACGGAGAAGCTTATCGGGCGAACAAGATTTGTCCCAGAATCACAAC ATCAAAGCTAATAGCACGGTGCCACCCTCCTTTTAGAGAATCTAGGGAGG TTTATAGAGCTCTCGCCGATTGCGCCACTCATTCCGATAACCTCCGCGTT CCCTACTCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7824:2415..6173-

>mRNA_H-elongata_contig7824.15495.1 ID=mRNA_H-elongata_contig7824.15495.1|Name=mRNA_H-elongata_contig7824.15495.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3846bp|location=Sequence derived from alignment at H-elongata_contig7824:2415..6173- (Himanthalia elongata Himel1 dioecious)
ATGGAGGCGTTCAAGTCCATGAGTACCGTCATCAAGGCGGCAAATATGAA
CCTGAGGAGTGGTGACCTAGCGGTCGCGGAGCAGAACTACATCGACGCCC
TAATCATATTTAAGAAGCTCGCAAATGACCGAGGGATGGAGGCGTTCAAG
TCCATGAGTACCGTCATCAAGGCGGCAAATATGAACCTGAGGAGTGGTGA
CCTAGCGGTCGCGGAGCAGAACTACATCGACGCCCTAATCATATTTAAGA
AGCTCGCAAATGACCGAGGGGTGGCAATTGCCAACAACAACTTGGGCACT
CTCCACACTTTACAAGCCCAGGAGTTAGAATATAAGGCGTCGTTGGTTCA
TGAAAGCAACAGTACCGAAGGCAGGCAGCTCAGCGAGGCGATCGACCATC
TTTACGGTGACGCGATCGTGAACTACCAGCTTGCGATATCTGACGCCGAG
ATGCTTTGCGCAGCCGTCACCCCGCAAGACGACGGCCGGTCACGAGTGCT
TGCCGACTCAATCTCTGCGGGTAAGACCGAAAGTAAGACGAAGGACTTCA
AAAGTGAGACGAAGAATCTCGAAAGTGGTGCTAAGGACCTTGAAAATGCC
TTGGCTGTTTCTCCAGATGTGCGAATCGAGGGCCCCGCCATCAAACGAGA
GATGGATGAAAGCACCTCTAACGCCGCCGCCCTTTTCCTCCAACTCTCTC
ATCGTAAGTTCAACTTGGCAGTGTGCCTCCTTGCTAAGGCCAATAGTGCA
CCCTCAAAGAAAGAACCGGATGCAAAAGGGATCGATCAGGCGCGACAGCT
TCTCATCAATTGCATTCGCTTGACAAGCAAAATCAAGGACGAGGCAGGAG
ATGAATGGCGAGCGAAATGCCTCCTCGAGTTGGCCAATCTCGAGCGCGCT
GCGCATAATCGATGTCAAGAGGCTAGTGAGGCGCTCGATGCCGCTGAGCG
CGTGATCGACCCCTACCGCGGCGTCAAGGGCGATCTCAAGGAGGGAACAC
CACGTTTCTCGCTCGCTGTTGTACTCCCGCAACGACTTCTCGCGGCGTTC
GGAGCGAATCGGCTAGCCACTGGCGACACGGTGGCAGCAATCAACTTCTG
GACCCGAGCAATAATTGGCAGCGGCGACAAGATGGATGTAGGGGCGGTAG
AATCCTCCCTGGTGGGACTTCGCCGTCTCGCTAGGAGCCGGCAAGACAGG
GGGCATTTTCCCTCCGAGTTGTTGATGGCATTGGGTCTATCTAACGAGGG
GGGGGTGGGCGTCCGGTCGTTGGTGTCGGCAATTGACGGCGCATTGGTCA
AGGTCAGAAAATCGTCGACGCAAAGAAAGGGGCGACAGACAATTGATGTT
GACCTATGTTTCGTCATGGACTGCACGGGGTCGGTGGCAATTGCCAACAA
CAACTTGGGCACTCTCCACACTTTACAAGCCCAGGAGTTAGAATATAAGG
CGTCGTTGGTTCATGAAAGCAACAGTACCGAAGGCAGGCAGCTCAGCGAG
GCGATCGACCATCTTTACGGTGACGCGATCGTGAACTACCAGCTTGCGAT
ATCTGACGCCGAGATGCTTTGCGCAGCCGTCACCCCGCAAGACGACGGCC
GGTCACGAGTGCTTGCCGACTCAATCTCTGCGGGTAAGACCGAAAGTAAG
ACGAAGGACTTCAAAAGTGAGACGAAGAATCTCGAAAGTGGTGCTAAGGA
CCTTGAAAATGCCTTGGCTGTTTCTCCAGATGTGCGAATCGAGGGCCCCG
CCATCAAACGAGAGATGGATGAAAGCACCTCTAACGCCGCCGCCCTTTTC
CTCCAACTCTCTCATCGTAAGTTCAACTTGGCAGTGTGCCTCCTTGCTAA
GGCCAATAGTGCACCCTCAAAGAAAGAACCGGATGCAAAAGGGATCGATC
AGGCGCGACAGCTTCTCATCAATTGCATTCGCTTGACAAGCAAAATCAAG
GACGAGGCAGGAGATGAATGGCGAGCGAAATGCCTCCTCGAGTTGGCCAA
TCTCGAGCGCGCTGCGCATAATCGATGTCAAGAGGCTAGTGAGGCGCTCG
ATGCCGCTGAGCGCGTGATCGACCCCTACCGCGGCGTCAAGGGCGATCTC
AAGGAGGGAACACCACGTTTCTCGCTCGCTGTTGTACTCCCGCAACGACT
TCTCGCGGCGTTCGGAGCGAATCGGCTAGCCACTGGCGACACGGTGGCAG
CAATCAACTTCTGGACCCGAGCAATAATTGGCAGCGGCGACAAGATGGAT
GTAGGGGCGGTAGAATCCTCCCTGGTGGGACTTCGCCGTCTCGCTAGGAG
CCGGCAAGACAGGGGGCATTTTCCCTCCGAGTTGTTGATGGCATTGGGTC
TATCTAACGAGGGGGGGGTGGGCGTCCGGTCGTTGGTGTCGGCAATTGAC
GGCGCATTGGTCAAGGTCAGAAAATCGTCGACGCAAAGAAAGGGGCGACA
GACAATTGATGTTGACCTATGTTTCGTCATGGACTGCACGGGGTCGATGC
AACCCTGGGTGGATCAAGCCAAGAACAAGCTGACAGCTATAATCGAAGAA
GCGAAAAAAGAAGGAACCGTCCGAAAGCTTCGTGTGGCTTTCGTAGGATG
CAACCCTGGGTGGATCAAGCCAAGAACAAGCTGACAGCTATAATCGAAGA
AGCGAAAAAAGAAGGAACCGTCCGAAAGCTTCGTGTGGCTTTCGTAGGAT
ACCGCGACTACGGATATATTGTGCGATACGAGGGCCCGTACGACTTCCAC
ACGGAACAAGAGCTCCCTGCACTCCTCGTGAAGATTAAGAATATTAACAC
CCGTGTTTGTCCTACAACATCGAACGATCTCCCAGAGGATGCTGCCGGCG
GACTTTTTCACGCCACTAATTTTTCGTGGAGCAGTCCGGTCAGGCTGTGC
ACAGTGATTGCTGACATGCCTTGCCACGGCCGCGAGTACCACAATCTTTC
GGATAATTATCCAGACGGATGCCCTAGTGGCCAGGATCCGGCTAAACTCC
TCGATAAGCTGCAGATACCGCGACTACGGATATATTGTGCGATACGAGGG
CCCGTACGACTTCCACACGGAACAAGAGCTCCCTGCACTCCTCGTGAAGA
TTAAGAATATTAACACCCGTGTTTGTCCTACAACATCGAACGATCTCCCA
GAGGATGCTGCCGGCGGACTTTTTCACGCCACTAATTTTTCGTGGAGCAG
TCCGGTCAGGCTGTGCACAGTGATTGCTGACATGCCTTGCCACGGCCGCG
AGTACCACAATCTTTCGGATAATTATCCAGACGGATGCCCTAGTGGCCAG
GATCCGGCTAAACTCCTCGATAAGCTGCAGCACGATCTTGGGGTTGATAT
TTACTTCGTCAAGATCACAGACAACACGGATAAGATGATTGCAGTTCTTC
AGGACAAACTGTCATCCTTCAAAGCGAGCCGGCAAGAAGATAAATCCCGG
GATCTCCGGGAACCATCAAACGCAGATCCAGCGTTCAAAGTCCACGACCT
CGGCTCGGACGACAACCAATTTTTGGAGATAATGGTCGAAAGTGTTAAAG
AGAGCGTCGATAGACTGCCGCTAATCCTTGAGGAGTAGCACGATCTTGGG
GTTGATATTTACTTCGTCAAGATCACAGACAACACGGATAAGATGATTGC
AGTTCTTCAGGACAAACTGTCATCCTTCAAAGCGAGCCGGCAAGAAGATA
AATCCCGGGATCTCCGGGAACCATCAAACGCAGATCCAGCGTTCAAAGTC
CACGACCTCGGCTCGGACGACAACCAATTTTTGGAGATAATGGTCGAAAG
TGTTAAAGAGAGCGTCGATAGACTGCCGCTAATCCTTGAGGAGTAG
back to top