mRNA_H-elongata_contig7819.15491.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7819.15491.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI) HSP 1 Score: 209 bits (531), Expect = 7.450e-65 Identity = 106/202 (52.48%), Postives = 134/202 (66.34%), Query Frame = 1
Query: 1 CSDWNTWLPPRTDPAIIMQV-AGHSVILSDSDALWLKDPFLDFDLPEVRGSSIVASRGSFPQEVGSVWGSTLCMGFIFFR---AGTGVDMVLSIMDRLVMEIGDDQKAINFALDELAINWDMS-TDMRYIPSTDFGRGTIAGLGNGD---LNVTLLPHNRYTRRCNKVPISSDTSVAHCHSSKKGASKIKWMEVENLWVIDD 582
C+DW W+PP + P ++MQV AGH V++SD+DALWL DP DF LP V GSSIVASRGSFP EVG VWG+T+CMGFI FR + + +++M+ LV+E DDQ A+N A +L I W+ +DMRY ST FG G I L + D VTLLPH+ YTR C P+S+ T VAHC SSK SK WM +LW +D+
Sbjct: 45 CADWAAWVPPMSGPTVVMQVEAGHDVMMSDADALWLADPMKDFSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQPFTVTLLPHSAYTRICASTPVSNTTVVAHCISSKTPQSKADWMHRMDLWAVDE 246
BLAST of mRNA_H-elongata_contig7819.15491.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE) HSP 1 Score: 187 bits (474), Expect = 2.390e-55 Identity = 109/275 (39.64%), Postives = 136/275 (49.45%), Query Frame = 1
Query: 1 CSDWNTWLPPRTDPAIIMQV---------------------------------------------------------------------------AGHSVILSDSDALWLKDPFLDFDLPEVRGSSIVASRGSFPQEVGSVWGSTLCMGFIFFRAGTGVDMV---LSIMDRLVMEIGDDQKAINFALDELAINWDMSTDMRYIPSTDFGRGTIAGL---GNGDLNVTLLPHNRYTRRCNKVPISSDTSVAHCHSSKKGASKIKWMEVENLWVIDD 582
C+DW W+PPR+DPAI+MQV AG VI+SD+DALWL DPF DF+LP V SS+VASRG FP+ +G WG+T+CMGF+ FRA TG +V L +MD LV + DDQ ++N A + L I WD +DMRY+ S FG GTI L N +VTLLPHN YTR C++ PIS+ T VAHC + K SK WM LW D+
Sbjct: 44 CADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRA-TGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLWFSDN 317
BLAST of mRNA_H-elongata_contig7819.15491.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE) HSP 1 Score: 173 bits (439), Expect = 8.780e-50 Identity = 87/187 (46.52%), Postives = 121/187 (64.71%), Query Frame = 1
Query: 31 RTDPAIIMQVAGHSVILSDSDALWLKDPFLDFDLPEVRGSSIVASRGSFPQEVGSVWGSTLCMGFIFFRAG-TGVDMVLSIMDRLVMEIGDDQKAINFALDELAINWDMSTDMRYIPSTDFGRGTIAGL-GNGD-LNVTLLPHNRYTRRCNKVPISSDTSVAHCHSSKKGASKIKWMEVENLWVIDD 582
R + + + AG V++SD+DA+WL+DP DF S++VASR P + WG+T+CMGF FFRAG + + ++++ +V E+GDDQKA+N ALD+L + WD ++DM + ST G G I + NGD L VTLLPHN+YTR C + PIS+DT VAHC SS KG WM+ +LW + D
Sbjct: 155 RVEATLCLLNAGQDVLMSDADAIWLRDPTNDFASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGSAMQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPTSDMDFTNSTRPGTGVIENITANGDPLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPD 341
BLAST of mRNA_H-elongata_contig7819.15491.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI) HSP 1 Score: 164 bits (415), Expect = 1.770e-45 Identity = 81/187 (43.32%), Postives = 116/187 (62.03%), Query Frame = 1
Query: 31 RTDPAIIMQVAGHSVILSDSDALWLKDPFLDFDLPEVRGSSIVASRGSFPQEVGSVWGSTLCMGFIFFRAG-TGVDMVLSIMDRLVMEIGDDQKAINFALDELAINWDMSTDMRYIPSTDFGRGTIAGL--GNGDLNVTLLPHNRYTRRCNKVPISSDTSVAHCHSSKKGASKIKWMEVENLWVIDD 582
R D I + AG V++SD+DA+WL+DP D S++VASR P + WG+T+CMGF FFRAG + + +++++ + E+G+DQ A+N AL++L + WD +DM + +T G G I + G L VTLLPHN+YTR C + PIS+DT VAHC SS KG WM+ +LW + D
Sbjct: 230 RIDVTICLLNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGGSAMQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPMSDMNFTDNTRPGTGVIENITVDGGSLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPD 416
BLAST of mRNA_H-elongata_contig7819.15491.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI) HSP 1 Score: 115 bits (287), Expect = 2.340e-27 Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 1
Query: 49 IMQVAGHSVILSDSDALWLKDPFLD-FDLPEVRGSSIVASRGSFPQEVGSVWGSTLCMGFIFFRAGT--GVDMVLSIMDRLVMEIGDDQKAINFALDELAINWDMSTDMRYIPSTDFGRGTIAGLGNGD 426
++++ VI+SD+DALWL DP D F + IVASRGS+P + WGSTLCMGFI FRA G+ L +M LV++ DDQ ++N A +L I WD ++DMRY ST +GRG IAGLG +
Sbjct: 128 LLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGTSN 256
BLAST of mRNA_H-elongata_contig7819.15491.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.530e-24 Identity = 52/88 (59.09%), Postives = 63/88 (71.59%), Query Frame = 1
Query: 61 AGHSVILSDSDALWLKDPFLDFDLPEVRGSSIVASRGSFPQEVGSVWGSTLCMGFIFFRAG---TGVDMVLSIMDRLVMEIGDDQKAI 315
AGH VI+SD+DALWL DP DF LP V SSIVASRG P+EVG VWG+T+CMGFI FRA T + +++M+ LV E DDQ A+
Sbjct: 61 AGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148
BLAST of mRNA_H-elongata_contig7819.15491.1 vs. uniprot
Match: A0A7S0SXH7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXH7_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.780e-16 Identity = 57/205 (27.80%), Postives = 96/205 (46.83%), Query Frame = 1
Query: 13 NTWLPPRTDPAIIMQVAGHSVILSDSDALWLKDPFLDFDLPEVRGSSIVASRGSFPQEVGSVWGSTLCMGFIFFRAGTGVDMVLSIMDRLVMEIGDDQKAINFALDELAINWDMSTDMR--YIPSTDFGRGTIAGLG-----NGDLNVTLLPHNRYTRRCN----------KVPISSDTSVAHCHSSKKGASKIKWMEVENLWVI 576
N WL + ++ VIL+D D+LW+ P D + SSIV+SR +P E+ SVWG+TLCMGFI+F+A + ++++ + + D+ D++ N ++ + + G IA +G N ++TLLPH +Y R CN K +D + HC ++K + + +N W +
Sbjct: 39 NIWLRRIEILSHLINNENQDVILTDLDSLWINSPLNDISIHSAS-SSIVSSRAWWPHELWSVWGATLCMGFIYFKAD---EFSKYFVNKIYLTMSDNINNYRKVDDQITANEELYKNQIEWFDKPMSVGNNAIANIGSISYNNMSYSITLLPHYKYIRNCNNLTDYTNRNEKKSRFNDIVILHCKYNRKVTRNLVFTFFKN-WTL 238
BLAST of mRNA_H-elongata_contig7819.15491.1 vs. uniprot
Match: UPI001FF119D2 (glycosyltransferase family 77 protein n=1 Tax=Starkeya koreensis TaxID=266121 RepID=UPI001FF119D2) HSP 1 Score: 82.0 bits (201), Expect = 2.210e-15 Identity = 54/166 (32.53%), Postives = 87/166 (52.41%), Query Frame = 1
Query: 64 GHSVILSDSDALWLKDPFLDFDLPEVRGSSIVASR-GSFPQEVGSVWGSTLCMGFIFFRAGTGVDMVLSIMDRLVMEI-GDDQKAINFALDE-LAINWDMS-TDMRYIPSTDFGRGTIAG-LGNGDLNVTLLPHNRYTRRCNKVPISSDTSVAHCHSSKKGASKIK 546
G SV+ SD DA+WL+DP D +RG + +A + GSFPQE + WG ++CMGF F R G + V+ +++ + G DQ+ +N +L E + W+ + + D ++AG G L ++ LPH+ Y R + V H +S K A+K++
Sbjct: 112 GRSVLYSDVDAIWLRDPVDDI----LRGEADMAFQPGSFPQEAKTAWGFSVCMGFFFMRPG---EAVIDLLETSIRRFDGSDQRGLNLSLLEGFDLRWESRPANWEHGRIEDGWTRSVAGRCGRTGLRLSALPHSFYQRHGTRPETMDHAYVCHPNSPKDPAAKLR 270
BLAST of mRNA_H-elongata_contig7819.15491.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 1.020e-12 Identity = 43/89 (48.31%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 49 IMQVAGHSVILSDSDALWLKDPFLD-FDLPEVRGSSIVASRGSFPQEVGSVWGSTLCMGFIFFRAGT--GVDMVLSIMDRLVMEIGDDQ 306
+++V VI+SD+DALWL DP D F I+ASRGS+P E WGSTLCMGFI FRA G+ L +M LV++ DDQ
Sbjct: 78 LLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQ 166
BLAST of mRNA_H-elongata_contig7819.15491.1 vs. uniprot
Match: A0A354V5R7_9PROT (Nucleotid_trans domain-containing protein n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A354V5R7_9PROT) HSP 1 Score: 67.0 bits (162), Expect = 1.060e-9 Identity = 50/185 (27.03%), Postives = 80/185 (43.24%), Query Frame = 1
Query: 64 GHSVILSDSDALWLKDPFLDFDLPEVRGSSIVASRGSF-PQEVGSVWGSTLCMGFIFFRAGTGVDMVLSIMDRLVME---IGDDQKAINFALDELAINWDMSTDMRYIPSTDFGRGTI-------------AGLGNGDLNVTLLPHNRYTRRCNKVPISSDTSVAHCHSSKKGASKIKWMEVENL 567
G+ V++SD+DA+WL+DP +P +R + + R + P + S WG C GF FR G + ++R V E + DDQ +N AL + +W +PS R + L L + LPH+++ R D V H +S K K++ ++V L
Sbjct: 163 GYDVVMSDADAVWLRDP-----VPYLRDADVAFQRIVYHPPAIASQWGFAACGGFNAFRGGV---KTTAFLERCVQENRILFDDQVVLNLALLDEDPHWHCEHPDWTLPSRQNDRSALETAFARCANAPIRGDLKTSGLQLLALPHDKFWRHAFVSTPVRDMVVCHPNSPKDDLEKMQLLDVMGL 339 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7819.15491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7819.15491.1 >prot_H-elongata_contig7819.15491.1 ID=prot_H-elongata_contig7819.15491.1|Name=mRNA_H-elongata_contig7819.15491.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp CSDWNTWLPPRTDPAIIMQVAGHSVILSDSDALWLKDPFLDFDLPEVRGSback to top mRNA from alignment at H-elongata_contig7819:6841..7644- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7819.15491.1 ID=mRNA_H-elongata_contig7819.15491.1|Name=mRNA_H-elongata_contig7819.15491.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=804bp|location=Sequence derived from alignment at H-elongata_contig7819:6841..7644- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7819:6841..7644- >mRNA_H-elongata_contig7819.15491.1 ID=mRNA_H-elongata_contig7819.15491.1|Name=mRNA_H-elongata_contig7819.15491.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig7819:6841..7644- (Himanthalia elongata Himel1 dioecious)back to top |