mRNA_H-elongata_contig78164.15487.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78164.15487.1
Unique NamemRNA_H-elongata_contig78164.15487.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78164.15487.1 vs. uniprot
Match: D7FNR9_ECTSI (Lactoylglutathione lyase family protein / glyoxalase I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR9_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 2.030e-39
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1
Query:    1 KIHLMELPNPDPVDGRPEHGGRDRHVAFTIQDLAPLKGRLDEAGVNYTMSKSGRAALFCRDLDGNAFE 204
            ++HLMELPNPDPVDGRPEHGGRDRHVAF+I DL PLKGRLD AGV YTMSKSGRAALFCRDLDGNAFE
Sbjct:   94 QVHLMELPNPDPVDGRPEHGGRDRHVAFSIADLRPLKGRLDSAGVTYTMSKSGRAALFCRDLDGNAFE 161          
BLAST of mRNA_H-elongata_contig78164.15487.1 vs. uniprot
Match: A0A7S3RP39_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RP39_9SPIT)

HSP 1 Score: 120 bits (300), Expect = 6.090e-33
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 1
Query:    1 KIHLMELPNPDPVDGRPEHGGRDRHVAFTIQDLAPLKGRLDEAGVNYTMSKSGRAALFCRDLDGNAFE 204
            +IH+MELPNPDPVDGRPEHGGRDRH+A TI+DL PLK +L    V YTMSKSGRAALFCRDLDGNA E
Sbjct:   89 QIHIMELPNPDPVDGRPEHGGRDRHLALTIKDLEPLKKKLQAEDVVYTMSKSGRAALFCRDLDGNAME 156          
BLAST of mRNA_H-elongata_contig78164.15487.1 vs. uniprot
Match: A0A4D9CZQ2_9STRA (VOC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZQ2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.960e-31
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    1 KIHLMELPNPDPVDGRPEHGGRDRHVAFTIQDLAPLKGRLDEAGVNYTMSKSGRAALFCRDLDGNAFE 204
            +IHLMELPNPDP  GRPEHGGRDRHVAFT+ ++ PL  RL E GV +TMSKSGR A+FCRDLDGNA E
Sbjct:   91 QIHLMELPNPDPTRGRPEHGGRDRHVAFTVDNIDPLMARLTEEGVPFTMSKSGRRAVFCRDLDGNALE 158          
BLAST of mRNA_H-elongata_contig78164.15487.1 vs. uniprot
Match: A0A3M1V198_9GAMM (Glyoxalase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1V198_9GAMM)

HSP 1 Score: 112 bits (280), Expect = 2.240e-30
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    1 KIHLMELPNPDPVDGRPEHGGRDRHVAFTIQDLAPLKGRLDEAGVNYTMSKSGRAALFCRDLDGNAFEV 207
            ++HL+ELPNPDPVDGRP HGGRDRHVAF + DL  L+ RL+  G+ YT+S+SGRAALFCRD DGNA E+
Sbjct:   53 QVHLLELPNPDPVDGRPTHGGRDRHVAFAVADLDALRERLEARGIPYTLSRSGRAALFCRDPDGNACEL 121          
BLAST of mRNA_H-elongata_contig78164.15487.1 vs. uniprot
Match: A0A0S2TE73_9GAMM (Glyoxalase n=1 Tax=Candidatus Tenderia electrophaga TaxID=1748243 RepID=A0A0S2TE73_9GAMM)

HSP 1 Score: 112 bits (280), Expect = 2.580e-30
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    1 KIHLMELPNPDPVDGRPEHGGRDRHVAFTIQDLAPLKGRLDEAGVNYTMSKSGRAALFCRDLDGNAFE 204
            ++HLM++PNPDPV GRPEHGGRDRH+AF + DL  L  RLD+AG  YT SKSGR ALFCRDLDGNA E
Sbjct:   52 QLHLMQVPNPDPVTGRPEHGGRDRHIAFAVADLEALCQRLDDAGAVYTRSKSGRKALFCRDLDGNALE 119          
BLAST of mRNA_H-elongata_contig78164.15487.1 vs. uniprot
Match: B8GPS4_THISH (Glyoxalase/bleomycin resistance protein/dioxygenase n=2 Tax=Thioalkalivibrio TaxID=106633 RepID=B8GPS4_THISH)

HSP 1 Score: 111 bits (278), Expect = 4.380e-30
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 KIHLMELPNPDPVDGRPEHGGRDRHVAFTIQDLAPLKGRLDEAGVNYTMSKSGRAALFCRDLDGNAFEVGHA 216
            +IHL+ELPNPDPVDGRPEHGGRDRHVAF++  L  ++ RL+ AGV YTMS+SGR ALF RD DGNA E+  A
Sbjct:   52 QIHLLELPNPDPVDGRPEHGGRDRHVAFSVSGLEAIRQRLEAAGVAYTMSRSGRPALFVRDPDGNAMELMEA 123          
BLAST of mRNA_H-elongata_contig78164.15487.1 vs. uniprot
Match: A0A0B0H9D4_SOVGS (Glyoxalase n=3 Tax=Solemya velum gill symbiont TaxID=2340 RepID=A0A0B0H9D4_SOVGS)

HSP 1 Score: 111 bits (277), Expect = 6.210e-30
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 1
Query:    1 KIHLMELPNPDPVDGRPEHGGRDRHVAFTIQDLAPLKGRLDEAGVNYTMSKSGRAALFCRDLDGNAFEV 207
            +IHL+EL NPDPVD RPEHGGRDRH+A T++DL  +   ++EAG+NYT+S+SGRAALFCRD DGNA E+
Sbjct:   53 QIHLLELENPDPVDDRPEHGGRDRHLAVTVKDLEAVTAVMEEAGINYTLSRSGRAALFCRDPDGNALEM 121          
BLAST of mRNA_H-elongata_contig78164.15487.1 vs. uniprot
Match: A0A353XZM2_9GAMM (Glyoxalase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A353XZM2_9GAMM)

HSP 1 Score: 109 bits (273), Expect = 7.730e-30
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    1 KIHLMELPNPDPVDGRPEHGGRDRHVAFTIQDLAPLKGRLDEAGVNYTMSKSGRAALFCRDLDGNAFEV 207
            +IHL+ELPNPDP++ RP HGGRDRHVA  + DL+ ++ RLDEAG++YTMS+SGR ALFCRD D NA E+
Sbjct:   10 QIHLLELPNPDPLENRPPHGGRDRHVALAVADLSLIRQRLDEAGIDYTMSRSGREALFCRDPDANAIEL 78          
BLAST of mRNA_H-elongata_contig78164.15487.1 vs. uniprot
Match: A0A7R9TSR7_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TSR7_9VIRI)

HSP 1 Score: 111 bits (277), Expect = 9.290e-30
Identity = 51/67 (76.12%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    4 IHLMELPNPDPVDGRPEHGGRDRHVAFTIQDLAPLKGRLDEAGVNYTMSKSGRAALFCRDLDGNAFE 204
            IHLMELPNPDPVDGRP+HGGRDRH AF I D+ PL  RL+  GV YTMSKSGRAA+F RD DGNA E
Sbjct:   68 IHLMELPNPDPVDGRPDHGGRDRHAAFGIDDVKPLVERLERHGVPYTMSKSGRAAVFFRDPDGNAME 134          
BLAST of mRNA_H-elongata_contig78164.15487.1 vs. uniprot
Match: A0A2A4XI50_9GAMM (Glyoxalase n=1 Tax=Ectothiorhodospiraceae bacterium TaxID=2026737 RepID=A0A2A4XI50_9GAMM)

HSP 1 Score: 110 bits (275), Expect = 1.180e-29
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    1 KIHLMELPNPDPVDGRPEHGGRDRHVAFTIQDLAPLKGRLDEAGVNYTMSKSGRAALFCRDLDGNAFE 204
            +IHL+ELPNPDPV GRPEHGGRDRH AF+++ L  L  +LD AGV YT+SKSGR ALFCRD DGNA E
Sbjct:   49 QIHLLELPNPDPVTGRPEHGGRDRHAAFSVEALNKLMDKLDNAGVVYTLSKSGRRALFCRDPDGNALE 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78164.15487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNR9_ECTSI2.030e-3989.71Lactoylglutathione lyase family protein / glyoxala... [more]
A0A7S3RP39_9SPIT6.090e-3379.41Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A4D9CZQ2_9STRA3.960e-3175.00VOC domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A3M1V198_9GAMM2.240e-3069.57Glyoxalase n=1 Tax=Gammaproteobacteria bacterium T... [more]
A0A0S2TE73_9GAMM2.580e-3072.06Glyoxalase n=1 Tax=Candidatus Tenderia electrophag... [more]
B8GPS4_THISH4.380e-3069.44Glyoxalase/bleomycin resistance protein/dioxygenas... [more]
A0A0B0H9D4_SOVGS6.210e-3068.12Glyoxalase n=3 Tax=Solemya velum gill symbiont Tax... [more]
A0A353XZM2_9GAMM7.730e-3066.67Glyoxalase (Fragment) n=1 Tax=Gammaproteobacteria ... [more]
A0A7R9TSR7_9VIRI9.290e-3076.12Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A2A4XI50_9GAMM1.180e-2972.06Glyoxalase n=1 Tax=Ectothiorhodospiraceae bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78164contigH-elongata_contig78164:1327..1557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue6.8e-28
Seed eggNOG ortholog2880.D7FNR9
KEGG koko:K08234
EggNOG free text desc.Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
EggNOG OGs29DJB@1,2RKPE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionlactoylglutathione lyase family protein / glyoxalase I family protein
Ec32 orthologEc-01_004500.1
Exons1
Model size231
Cds size219
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931186.479541-CDS-H-elongata_contig78164:1326..15451622931186.479541-CDS-H-elongata_contig78164:1326..1545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78164 1327..1545 -
1691679733.49448-CDS-H-elongata_contig78164:1326..15451691679733.49448-CDS-H-elongata_contig78164:1326..1545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78164 1327..1545 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931186.499788-UTR-H-elongata_contig78164:1545..15571622931186.499788-UTR-H-elongata_contig78164:1545..1557Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78164 1546..1557 -
1691679733.5092313-UTR-H-elongata_contig78164:1545..15571691679733.5092313-UTR-H-elongata_contig78164:1545..1557Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78164 1546..1557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78164.15487.1prot_H-elongata_contig78164.15487.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78164 1327..1545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78164.15487.1

>prot_H-elongata_contig78164.15487.1 ID=prot_H-elongata_contig78164.15487.1|Name=mRNA_H-elongata_contig78164.15487.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MELPNPDPVDGRPEHGGRDRHVAFTIQDLAPLKGRLDEAGVNYTMSKSGR
AALFCRDLDGNAFEVGHARKAQ*
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mRNA from alignment at H-elongata_contig78164:1327..1557-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78164.15487.1 ID=mRNA_H-elongata_contig78164.15487.1|Name=mRNA_H-elongata_contig78164.15487.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig78164:1327..1557- (Himanthalia elongata Himel1 dioecious)
AAGATCCATTTGATGGAGCTACCTAACCCTGACCCAGTCGACGGCCGGCC GGAGCACGGGGGGCGAGATCGGCACGTCGCTTTCACCATCCAAGACCTTG CGCCTCTCAAGGGGCGCTTAGACGAAGCAGGCGTCAATTACACCATGTCG AAGAGCGGCAGAGCGGCTCTCTTCTGTAGAGACCTTGACGGCAACGCATT TGAGGTTGGTCACGCAAGAAAAGCTCAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig78164:1327..1557-

>mRNA_H-elongata_contig78164.15487.1 ID=mRNA_H-elongata_contig78164.15487.1|Name=mRNA_H-elongata_contig78164.15487.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig78164:1327..1557- (Himanthalia elongata Himel1 dioecious)
ATGGAGCTACCTAACCCTGACCCAGTCGACGGCCGGCCGGAGCACGGGGG
GCGAGATCGGCACGTCGCTTTCACCATCCAAGACCTTGCGCCTCTCAAGG
GGCGCTTAGACGAAGCAGGCGTCAATTACACCATGTCGAAGAGCGGCAGA
GCGGCTCTCTTCTGTAGAGACCTTGACGGCAACGCATTTGAGGTTGGTCA
CGCAAGAAAAGCTCAATAAATGGAGCTACCTAACCCTGACCCAGTCGACG
GCCGGCCGGAGCACGGGGGGCGAGATCGGCACGTCGCTTTCACCATCCAA
GACCTTGCGCCTCTCAAGGGGCGCTTAGACGAAGCAGGCGTCAATTACAC
CATGTCGAAGAGCGGCAGAGCGGCTCTCTTCTGTAGAGACCTTGACGGCA
ACGCATTTGAGGTTGGTCACGCAAGAAAAGCTCAATAA
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