mRNA_H-elongata_contig78162.15486.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78162.15486.1
Unique NamemRNA_H-elongata_contig78162.15486.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78162.15486.1 vs. uniprot
Match: A0A6H5KLL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL3_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 4.010e-70
Identity = 184/435 (42.30%), Postives = 230/435 (52.87%), Query Frame = 1 
Query:    1 LLRKATSWFTKATEPSLVTESRRGASGGDGQR--LVEHYEACLEELEEARHRTRKAVGLVAKGGR----------------------DVFGETGALCALELARLALRKNREMEMDIGRARESSQRSAHKKQQQRARLCQGVFKHASEALKFDEAFDAIRDNPEEQRREENLRALAQHMCESGRLGELCKLPL-DEPFPSRLPPSMIVMTALWELASGSNVAELVRGASAGDGLGRTNYFDCLYTFFSVRGEFVLAAEAQDDFRRRLEGHPSGSTLPFASAAQRARLAALNALAVAK---PHRGFASGKGDDEGTAALIPSRDDPSRRLDASGQPVGVQTTSSMARIAAVASAAIDLAEARAHKR---------------------FRRVAEHATVMTG---VSNVLEALLVAGKHEQAADVVLRGLAHQVRSRTE 1149
            LL +AT W+ K+++       R    GGD Q   +V+H+E  L E+E  R   ++                                + FG  G + ALELAR AL   RE+    G       +  H+  Q++ARLCQ VFKHASEAL F EAFDA+ DNP +Q+R+ENL ALAQHMCESGRLGELC L L D P       S +V  ALW LA  S+V +LV G   G G  R NY+DCLY F+  RGE V AA AQD+ R RLE H + STLPFA+ AQRARLAALNAL+VA    P              A++ P   +  RRLD  G+P GV+T + + R A  A+ AI LA A A K                         V    +V  G   VS ++EAL +AG++E+AADVVL GLAHQ R   E
Sbjct:  702 LLDRATKWYLKSSQALRAQLLRSSGGGGDNQAELVVKHFEDALLEVERVREGLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDFGGRGPVNALELARAALETERELRGSAGG------QQPHQPHQRKARLCQLVFKHASEALCFREAFDAVCDNPIDQQRKENLAALAQHMCESGRLGELCSLSLADCPRGGDWHTSRVVERALWPLARRSSVDDLV-GGPCGKGRSRVNYYDCLYAFYMARGEEVAAARAQDELRERLEAHSAASTLPFAAGAQRARLAALNALSVAGNAYPSSDXXXXXXXXXXVASICPPPGE--RRLDGYGRPAGVRTVAVLGREAVSAAGAIGLAVANAAKEEGVQEFGGRYAEXXXXXXXXXXXAVGVQVSVEVGNADVSGLVEALALAGRYEEAADVVLEGLAHQPRLMVE 1127
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BLAST of mRNA_H-elongata_contig78162.15486.1 vs. uniprot
Match: D7FXJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ0_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 5.220e-69
Identity = 183/417 (43.88%), Postives = 227/417 (54.44%), Query Frame = 1 
Query:    1 LLRKATSWFTKATEPSLVTESRRGASGGDGQR--LVEHYEACLEELEEARHRTRKAVGLVAKGGR----------------------DVFGETGALCALELARLALRKNREMEMDIGRARESSQRSAHKKQQQRARLCQGVFKHASEALKFDEAFDAIRDNPEEQRREENLRALAQHMCESGRLGELCKLPL-DEPFPSRLPPSMIVMTALWELASGSNVAELVRGASAGDGLGRTNYFDCLYTFFSVRGEFVLAAEAQDDFRR-------RLEGHPSGSTLPFASAAQRARLAALNALAVAKPHRGFASGKGDDEGTAALIPSRDDPS--RRLDASGQPVGVQTTSSMARIAAVASAAIDLAEARAHKRFRRVAEHATVMTGVSNVLEALLVAGKHEQAADVVLRGLAHQVRSRTE 1149
            LL +AT W+ K+++       R G  GG  Q   +VEH+E  L E+E  R   R+                                + FG  G + ALELAR AL   RE+    G       +      Q++ARLCQ VFKHASEAL F EAFDA+ DNP +Q+R+ENL AL QHMCESGRLGELC L L D P      PS +V +ALW LA  S+V +LV G   G G  R NY+DCLY F+  RGE V AA AQD+ R        R + H + STLPFA+ AQRARLAALNAL+VA    G A    DD   AA + S   P+  RRLD  G+P GV+T + + R A  A+ AI LA  +  +  R      TV      V+EAL + G++E+AADVVL GLAHQ R   E
Sbjct: 1121 LLDRATKWYLKSSQALRAQLLRPGGGGGHNQAESVVEHFEGALLEVERVREGLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDFGGRGPVNALELARAALETERELRGSAG------DQXXXXXXQRQARLCQLVFKHASEALCFREAFDAVCDNPIDQQRKENLAALVQHMCESGRLGELCSLSLADCPHGGGWHPSGVVDSALWPLARRSSVDDLV-GGPGGKGRSRVNYYDCLYAFYMARGEEVAAARAQDELRESPARSFDRWKPHSAASTLPFAAGAQRARLAALNALSVA----GNAYPSSDDT-AAATVASICPPAGERRLDGYGRPAGVRTVAVLGREAVSAAGAIGLAVVKGREGGRGARVWWTVRGERRGVVEALALGGRYEEAADVVLEGLAHQPRLMVE 1525
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BLAST of mRNA_H-elongata_contig78162.15486.1 vs. uniprot
Match: A0A7R9YFK4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFK4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.760e-5
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = 1 
Query:  337 LCQGVFKHASEALKFDEAFDAIRDNPEEQRREENLRALAQHMCESGRLGELCKLPLDEPFPSRLPPSMIVMTALWELASGSNV-AELVRGASAGDGLGRTNYFDCLYTFFSVRGEFVLAAEAQDDFRRRLE 726
            LC  +F+ + +A  +  AF A+R NP  QRR + L  L   MCE GRL EL +LPL +  P        V+  L +LA  S++  E   G +   G     Y+  L+ F+  +G    AA+A      RLE
Sbjct: 1024 LCSALFRLSVDAGDYAGAFQALRRNPNPQRRSDALSRLVAVMCEEGRLLELIELPLGDGSPET---ETQVIHVLEQLAGASDIHGEFAIGPAPALG---PKYYGALFAFYMKKGMLKDAADAMYRASLRLE 1148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78162.15486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KLL3_9PHAE4.010e-7042.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXJ0_ECTSI5.220e-6943.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9YFK4_9STRA2.760e-534.35Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78162contigH-elongata_contig78162:233..2631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_001850.1
Hectar predicted targeting categoryother localisation
Exons5
Model size1164
Cds size1164
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78162.15486.1prot_H-elongata_contig78162.15486.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78162 233..2631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931186.3642845-CDS-H-elongata_contig78162:232..4891622931186.3642845-CDS-H-elongata_contig78162:232..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78162 233..489 +
1691679733.4412382-CDS-H-elongata_contig78162:232..4891691679733.4412382-CDS-H-elongata_contig78162:232..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78162 233..489 +
1622931186.3808792-CDS-H-elongata_contig78162:838..10131622931186.3808792-CDS-H-elongata_contig78162:838..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78162 839..1013 +
1691679733.4524605-CDS-H-elongata_contig78162:838..10131691679733.4524605-CDS-H-elongata_contig78162:838..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78162 839..1013 +
1622931186.394535-CDS-H-elongata_contig78162:1465..17521622931186.394535-CDS-H-elongata_contig78162:1465..1752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78162 1466..1752 +
1691679733.4627216-CDS-H-elongata_contig78162:1465..17521691679733.4627216-CDS-H-elongata_contig78162:1465..1752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78162 1466..1752 +
1622931186.4119937-CDS-H-elongata_contig78162:1994..22891622931186.4119937-CDS-H-elongata_contig78162:1994..2289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78162 1995..2289 +
1691679733.4733016-CDS-H-elongata_contig78162:1994..22891691679733.4733016-CDS-H-elongata_contig78162:1994..2289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78162 1995..2289 +
1622931186.4283683-CDS-H-elongata_contig78162:2481..26311622931186.4283683-CDS-H-elongata_contig78162:2481..2631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78162 2482..2631 +
1691679733.4846058-CDS-H-elongata_contig78162:2481..26311691679733.4846058-CDS-H-elongata_contig78162:2481..2631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78162 2482..2631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78162.15486.1

>prot_H-elongata_contig78162.15486.1 ID=prot_H-elongata_contig78162.15486.1|Name=mRNA_H-elongata_contig78162.15486.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=388bp
LLRKATSWFTKATEPSLVTESRRGASGGDGQRLVEHYEACLEELEEARHR
TRKAVGLVAKGGRDVFGETGALCALELARLALRKNREMEMDIGRARESSQ
RSAHKKQQQRARLCQGVFKHASEALKFDEAFDAIRDNPEEQRREENLRAL
AQHMCESGRLGELCKLPLDEPFPSRLPPSMIVMTALWELASGSNVAELVR
GASAGDGLGRTNYFDCLYTFFSVRGEFVLAAEAQDDFRRRLEGHPSGSTL
PFASAAQRARLAALNALAVAKPHRGFASGKGDDEGTAALIPSRDDPSRRL
DASGQPVGVQTTSSMARIAAVASAAIDLAEARAHKRFRRVAEHATVMTGV
SNVLEALLVAGKHEQAADVVLRGLAHQVRSRTEGCSR*
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mRNA from alignment at H-elongata_contig78162:233..2631+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78162.15486.1 ID=mRNA_H-elongata_contig78162.15486.1|Name=mRNA_H-elongata_contig78162.15486.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2399bp|location=Sequence derived from alignment at H-elongata_contig78162:233..2631+ (Himanthalia elongata Himel1 dioecious)
CTCCTGAGAAAAGCTACCAGCTGGTTTACCAAAGCAACGGAGCCATCACT
GGTGACGGAGAGTCGACGGGGTGCTTCGGGAGGGGACGGGCAGCGGCTGG
TGGAACACTACGAGGCCTGCTTGGAGGAGCTTGAGGAAGCGAGGCACCGC
ACGAGGAAGGCCGTGGGGTTAGTCGCCAAGGGTGGAAGAGATGTGTTCGG
GGAAACCGGAGCCCTGTGTGCCCTGGAGCTTGCCCGGCTCGCCCTCCGGA
AGAACAGGTGAGTTGGCCCGCCCCTTCCCATATGTGTGTATCGGTGTGTT
TTGTGTATATGTCTGTTTGTTTCTGTTTGATTTAATCCCACCGCCGCAAT
TTTACGTTTTACGGTTTCAGCTTGGATATTTAGCAAGGGTTAAGTTCTTC
CCCCCCCCCTCCCCCCTCTCCCCCCTCTCCCCGCGGATGATTTGCTATTG
ATTGGTTTGGGATGTTAAATTCAGTATTTTTGGTAATTAGGCCGAGGAAG
AGGTAGGGGCAGCGGGGGGGGGTATCGAAAGGATATATACCAAAGCTGTA
AAAGGAGGGGCCATCAGCACGTCATTATTGTTTCCCGCATCATGTACATA
TCTCAGGGAGATGGAGATGGATATCGGTCGAGCAAGAGAGAGTTCGCAAC
GATCCGCGCACAAGAAGCAGCAGCAGCGAGCAAGACTGTGCCAGGGGGTT
TTCAAGCACGCTTCGGAGGCGTTGAAGTTCGACGAGGCGTTTGACGCCAT
CCGAGACAACCCTGAAGAACAGCGGCGCGAGGTTCGTCTGTGCGTCTATG
ACAGCGAGTGGCGACGCTTTATCGGAAAAAAATGTGGCGGCGCTCTAGGT
CATGCACCGGACTCGCGGGTTGGGGAGAGACAGGGAGAAAGAGATGCGAT
ATGGACCCCATGCACGCGTATATTGGTTTGATATTTTTAATATGCAATTG
CCGATAGTGCGTAACAACCAAGCTTTCCATATTTTTGGCAGGCGCCACGT
TTTTACGACGATTTTGACTAGGCTTAGTTTACGAGTTTGGTGCATTTGAT
ATGGTCTGTGATGGCCAGATTGTTGTGCCGCCCCACTCCTTCACTCTCAA
GGGAGTTCAAGTATGAAAGGCGGTAGCAATGTATTCCTGCCCATCAACCC
GGAACTACCGATCGCCCTCCACAGGCCGCGTGCACTGCTCACTTGATGTC
TATGCGCCGCGCACGCCTCCGAAAACTCTTTAGGAAAATCTGAGGGCCCT
CGCGCAACACATGTGTGAAAGCGGAAGGCTCGGGGAGTTGTGTAAACTGC
CGCTAGACGAGCCATTCCCCTCGCGCTTACCGCCTTCCATGATTGTGATG
ACCGCCCTGTGGGAACTGGCATCGGGCTCCAACGTGGCGGAGTTGGTTCG
GGGTGCGTCTGCGGGGGACGGGCTCGGGAGGACGAACTACTTCGACTGCT
TGTACACTTTCTTTTCGGTGCGCGGGGAGTTTGTGCTAGCTGCGGAGGCG
CAAGATGATTTCCGGAGGAGGTGAAGAAAAAGGAGGTTGCCGGGTTAGGG
GAGGTCGCGGCGGCACAACTTTCGCCCATGTTGATATTGTTTTCGAATGA
TTTTCCTCTGGGGTATTTGCGCTCCTTCAGCTGTGTAAGTTCTCCTTCGT
ATTTTAGGAATTAACCTTGGTAAGCGGGTTAATGGTTATTTGATTCGTTG
CACATCCCCTCCCCTATTCTCGAATCGATTCATCCTTAAAACTATTTATT
TTTTTACCGCAGGCTGGAAGGTCATCCATCCGGCTCGACCTTGCCCTTTG
CGTCCGCGGCTCAGCGCGCACGCCTCGCCGCGCTGAATGCTCTCGCCGTG
GCCAAGCCACACCGCGGCTTCGCCAGCGGTAAAGGGGACGACGAGGGGAC
GGCCGCATTGATCCCCAGCCGCGATGACCCCAGTCGCCGCCTCGATGCCT
CCGGGCAGCCGGTGGGCGTCCAAACGACCTCTTCCATGGCGCGTATCGCC
GCGGTTGCCTCCGCCGCGATCGATCTGGCCGAAGCTCGTGCCCACAAACG
CTTCCGGGTTTCCCCTAGGTCCGGCGTCATCAGCGCCTCCTCCTCTTTTT
CCTCCTCGTACCCCACTACTGAAAATGAACACACAAACAAACTGTCGTGG
CCGCGAGGGTTAAGGTCTACGGCGAGCGGAGCGGTGTCGACCATGTCCTT
GAATCGCACCGGAGAACGCGGGCAGACAATACCTCAAATGGAAGAAGAGA
GGGTGGCGGAGCATGCGACGGTGATGACTGGGGTCTCGAATGTATTGGAG
GCGTTGCTTGTGGCGGGGAAGCACGAGCAGGCCGCCGACGTGGTACTGCG
GGGGCTTGCCCACCAGGTGAGGAGCCGTACGGAAGGATGTTCTCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig78162:233..2631+

>mRNA_H-elongata_contig78162.15486.1 ID=mRNA_H-elongata_contig78162.15486.1|Name=mRNA_H-elongata_contig78162.15486.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2328bp|location=Sequence derived from alignment at H-elongata_contig78162:233..2631+ (Himanthalia elongata Himel1 dioecious)
CTCCTGAGAAAAGCTACCAGCTGGTTTACCAAAGCAACGGAGCCATCACT
GGTGACGGAGAGTCGACGGGGTGCTTCGGGAGGGGACGGGCAGCGGCTGG
TGGAACACTACGAGGCCTGCTTGGAGGAGCTTGAGGAAGCGAGGCACCGC
ACGAGGAAGGCCGTGGGGTTAGTCGCCAAGGGTGGAAGAGATGTGTTCGG
GGAAACCGGAGCCCTGTGTGCCCTGGAGCTTGCCCGGCTCGCCCTCCGGA
AGAACAGCTCCTGAGAAAAGCTACCAGCTGGTTTACCAAAGCAACGGAGC
CATCACTGGTGACGGAGAGTCGACGGGGTGCTTCGGGAGGGGACGGGCAG
CGGCTGGTGGAACACTACGAGGCCTGCTTGGAGGAGCTTGAGGAAGCGAG
GCACCGCACGAGGAAGGCCGTGGGGTTAGTCGCCAAGGGTGGAAGAGATG
TGTTCGGGGAAACCGGAGCCCTGTGTGCCCTGGAGCTTGCCCGGCTCGCC
CTCCGGAAGAACAGGGAGATGGAGATGGATATCGGTCGAGCAAGAGAGAG
TTCGCAACGATCCGCGCACAAGAAGCAGCAGCAGCGAGCAAGACTGTGCC
AGGGGGTTTTCAAGCACGCTTCGGAGGCGTTGAAGTTCGACGAGGCGTTT
GACGCCATCCGAGACAACCCTGAAGAACAGCGGCGCGAGGGAGATGGAGA
TGGATATCGGTCGAGCAAGAGAGAGTTCGCAACGATCCGCGCACAAGAAG
CAGCAGCAGCGAGCAAGACTGTGCCAGGGGGTTTTCAAGCACGCTTCGGA
GGCGTTGAAGTTCGACGAGGCGTTTGACGCCATCCGAGACAACCCTGAAG
AACAGCGGCGCGAGGAAAATCTGAGGGCCCTCGCGCAACACATGTGTGAA
AGCGGAAGGCTCGGGGAGTTGTGTAAACTGCCGCTAGACGAGCCATTCCC
CTCGCGCTTACCGCCTTCCATGATTGTGATGACCGCCCTGTGGGAACTGG
CATCGGGCTCCAACGTGGCGGAGTTGGTTCGGGGTGCGTCTGCGGGGGAC
GGGCTCGGGAGGACGAACTACTTCGACTGCTTGTACACTTTCTTTTCGGT
GCGCGGGGAGTTTGTGCTAGCTGCGGAGGCGCAAGATGATTTCCGGAGGA
GGAAAATCTGAGGGCCCTCGCGCAACACATGTGTGAAAGCGGAAGGCTCG
GGGAGTTGTGTAAACTGCCGCTAGACGAGCCATTCCCCTCGCGCTTACCG
CCTTCCATGATTGTGATGACCGCCCTGTGGGAACTGGCATCGGGCTCCAA
CGTGGCGGAGTTGGTTCGGGGTGCGTCTGCGGGGGACGGGCTCGGGAGGA
CGAACTACTTCGACTGCTTGTACACTTTCTTTTCGGTGCGCGGGGAGTTT
GTGCTAGCTGCGGAGGCGCAAGATGATTTCCGGAGGAGGCTGGAAGGTCA
TCCATCCGGCTCGACCTTGCCCTTTGCGTCCGCGGCTCAGCGCGCACGCC
TCGCCGCGCTGAATGCTCTCGCCGTGGCCAAGCCACACCGCGGCTTCGCC
AGCGGTAAAGGGGACGACGAGGGGACGGCCGCATTGATCCCCAGCCGCGA
TGACCCCAGTCGCCGCCTCGATGCCTCCGGGCAGCCGGTGGGCGTCCAAA
CGACCTCTTCCATGGCGCGTATCGCCGCGGTTGCCTCCGCCGCGATCGAT
CTGGCCGAAGCTCGTGCCCACAAACGCTTCCGGGCTGGAAGGTCATCCAT
CCGGCTCGACCTTGCCCTTTGCGTCCGCGGCTCAGCGCGCACGCCTCGCC
GCGCTGAATGCTCTCGCCGTGGCCAAGCCACACCGCGGCTTCGCCAGCGG
TAAAGGGGACGACGAGGGGACGGCCGCATTGATCCCCAGCCGCGATGACC
CCAGTCGCCGCCTCGATGCCTCCGGGCAGCCGGTGGGCGTCCAAACGACC
TCTTCCATGGCGCGTATCGCCGCGGTTGCCTCCGCCGCGATCGATCTGGC
CGAAGCTCGTGCCCACAAACGCTTCCGGAGGGTGGCGGAGCATGCGACGG
TGATGACTGGGGTCTCGAATGTATTGGAGGCGTTGCTTGTGGCGGGGAAG
CACGAGCAGGCCGCCGACGTGGTACTGCGGGGGCTTGCCCACCAGGTGAG
GAGCCGTACGGAAGGATGTTCTCGGTGAAGGGTGGCGGAGCATGCGACGG
TGATGACTGGGGTCTCGAATGTATTGGAGGCGTTGCTTGTGGCGGGGAAG
CACGAGCAGGCCGCCGACGTGGTACTGCGGGGGCTTGCCCACCAGGTGAG
GAGCCGTACGGAAGGATGTTCTCGGTGA
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