mRNA_H-elongata_contig77715.15451.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77715.15451.1
Unique NamemRNA_H-elongata_contig77715.15451.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77715.15451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77715contigH-elongata_contig77715:103..698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size596
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77715.15451.1prot_H-elongata_contig77715.15451.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77715 202..519 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.0604124-UTR-H-elongata_contig77715:102..2011622931183.0604124-UTR-H-elongata_contig77715:102..201Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77715 103..201 +
1691679732.0647562-UTR-H-elongata_contig77715:102..2011691679732.0647562-UTR-H-elongata_contig77715:102..201Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77715 103..201 +
1622931183.0939069-UTR-H-elongata_contig77715:519..6981622931183.0939069-UTR-H-elongata_contig77715:519..698Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77715 520..698 +
1691679732.092111-UTR-H-elongata_contig77715:519..6981691679732.092111-UTR-H-elongata_contig77715:519..698Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77715 520..698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.0775886-CDS-H-elongata_contig77715:201..5191622931183.0775886-CDS-H-elongata_contig77715:201..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77715 202..519 +
1691679732.075957-CDS-H-elongata_contig77715:201..5191691679732.075957-CDS-H-elongata_contig77715:201..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77715 202..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77715.15451.1

>prot_H-elongata_contig77715.15451.1 ID=prot_H-elongata_contig77715.15451.1|Name=mRNA_H-elongata_contig77715.15451.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MQHRAPKHVWSSYGSLALHHSSTSTPRQRTLYSLYAIFFLAATPRTNELV
QLLLLRQAQIVFCAILSKAAMKAAFILSCCPSCFFYSPPLISTCKSLPFL
PSSYA*
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mRNA from alignment at H-elongata_contig77715:103..698+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77715.15451.1 ID=mRNA_H-elongata_contig77715.15451.1|Name=mRNA_H-elongata_contig77715.15451.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=596bp|location=Sequence derived from alignment at H-elongata_contig77715:103..698+ (Himanthalia elongata Himel1 dioecious)
CCCAGCCCTCAGAACATCCACGTCTTCGTAGCACCATGAGAGGTGCAGTC
TAGGGGACCAAATCTTGATTTGGTAAAGGACGGAGAGAAAAAATGACGCA
TGCAACACAGAGCTCCTAAACACGTCTGGAGTAGCTACGGAAGCCTTGCT
TTACATCACTCTTCTACCTCCACTCCCCGCCAGCGTACCCTATATTCTTT
GTACGCAATATTTTTTTTGGCCGCTACACCACGCACAAATGAACTTGTAC
AACTACTACTACTGCGGCAGGCACAAATTGTTTTTTGCGCCATCCTCTCC
AAGGCCGCAATGAAGGCGGCGTTCATACTATCCTGCTGCCCTAGCTGTTT
TTTTTATTCTCCGCCTCTAATTTCCACGTGTAAGTCTCTACCATTTCTAC
CTTCCTCCTATGCCTGACTGCCTACCGCCACATCCCTTAGGCTCGTAGCC
TGCGTCAAGGCCACAGCAGCCTCGTCTTCCTTAATCTTCAATTTCCGCTT
TTTCGTCTCCGGGTCGTCTGTGTGAGATTCGAGGTACTTCGCGAGTGTAT
TCTCGAGATCTATGACGTCATCTGGCGTTCCTTTGGGAGACCCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig77715:103..698+

>mRNA_H-elongata_contig77715.15451.1 ID=mRNA_H-elongata_contig77715.15451.1|Name=mRNA_H-elongata_contig77715.15451.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig77715:103..698+ (Himanthalia elongata Himel1 dioecious)
ATGCAACACAGAGCTCCTAAACACGTCTGGAGTAGCTACGGAAGCCTTGC
TTTACATCACTCTTCTACCTCCACTCCCCGCCAGCGTACCCTATATTCTT
TGTACGCAATATTTTTTTTGGCCGCTACACCACGCACAAATGAACTTGTA
CAACTACTACTACTGCGGCAGGCACAAATTGTTTTTTGCGCCATCCTCTC
CAAGGCCGCAATGAAGGCGGCGTTCATACTATCCTGCTGCCCTAGCTGTT
TTTTTTATTCTCCGCCTCTAATTTCCACGTGTAAGTCTCTACCATTTCTA
CCTTCCTCCTATGCCTGAATGCAACACAGAGCTCCTAAACACGTCTGGAG
TAGCTACGGAAGCCTTGCTTTACATCACTCTTCTACCTCCACTCCCCGCC
AGCGTACCCTATATTCTTTGTACGCAATATTTTTTTTGGCCGCTACACCA
CGCACAAATGAACTTGTACAACTACTACTACTGCGGCAGGCACAAATTGT
TTTTTGCGCCATCCTCTCCAAGGCCGCAATGAAGGCGGCGTTCATACTAT
CCTGCTGCCCTAGCTGTTTTTTTTATTCTCCGCCTCTAATTTCCACGTGT
AAGTCTCTACCATTTCTACCTTCCTCCTATGCCTGA
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