mRNA_H-elongata_contig77504.15432.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77504.15432.1
Unique NamemRNA_H-elongata_contig77504.15432.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77504.15432.1 vs. uniprot
Match: A0A6H5KCE2_9PHAE (PKS_ER domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCE2_9PHAE)

HSP 1 Score: 371 bits (952), Expect = 8.030e-127
Identity = 187/219 (85.39%), Postives = 202/219 (92.24%), Query Frame = 1
Query:    1 LLRLEDDDDVSELGPKEVSVKILFAPINPSDINQVEGSYGVLPPLPAVGGNEGVGEITAVGSAVTRLAVGDWAVPMPASGFGTWRTVAKANEAMLQRCPSDIPAEYAATIGVNPCTAYRLLRDFETLREGDTVIQNGANSQVGMAVIQMARSMGVRTINVVRERPPGDDTVELLKSLGGDVVVTPAVIENPEAFSRAVEGLALPRLGLNCTGGSIATSV 657
            +LRLE DDDVSELGP+EV+VK+LFAPINPSDINQVEGSYGVLP LPAVGGNEGVGE+TAVGS VTRLAVGDWAVPMPA+GFGTWR V KA+ +MLQ+CPSDIPAEYAATIGVNPCTAYRLLRDFETLREGDTVIQNGANSQVG+AVIQMAR MGVRTINVVRERPPGD+TVELLKSLG DVVVTPAV+   + ++ AV GL  PRLGLNC GGSIATSV
Sbjct:   33 VLRLEADDDVSELGPREVAVKMLFAPINPSDINQVEGSYGVLPTLPAVGGNEGVGEVTAVGSDVTRLAVGDWAVPMPAAGFGTWRNVGKADVSMLQKCPSDIPAEYAATIGVNPCTAYRLLRDFETLREGDTVIQNGANSQVGVAVIQMARDMGVRTINVVRERPPGDNTVELLKSLGADVVVTPAVLGVADDYAEAVAGLPPPRLGLNCVGGSIATSV 251          
BLAST of mRNA_H-elongata_contig77504.15432.1 vs. uniprot
Match: A0A6S9DR41_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9DR41_HETAK)

HSP 1 Score: 234 bits (597), Expect = 7.690e-73
Identity = 119/219 (54.34%), Postives = 154/219 (70.32%), Query Frame = 1
Query:    4 LRLEDDD-DVSELGPKEVSVKILFAPINPSDINQVEGSYGVLPPLPAVGGNEGVGEITAVGSAVTRLAVGDWAVPMPASGFGTWRTVAKANEAMLQRCPSDIPAEYAATIGVNPCTAYRLLRDFETLREGDTVIQNGANSQVGMAVIQMARSMGVRTINVVRERPPGDDTVELLKSLGGDVVVTPAVIENPEAFSRAVEGLALPRLGLNCTGGSIATSV 657
            L +E +D +++ LG  +++V+++ APINPSD+N VEGSY +LP LPAVGGNEGV ++T VGSAV  L+VGDW +P    GFGTWR  A    A   + P  +PAEYAA + VNPCTA+RLLRDF+ L EGD +IQNGANS VGMAVIQMA++ G+ T+NVVR RP G + ++ LK LGGDVV     + N   F R +  L  P+L LNC GG  A ++
Sbjct:   49 LAMESEDVNLTSLGATDIAVQMIAAPINPSDLNMVEGSYDILPSLPAVGGNEGVAKVTGVGSAVKDLSVGDWVIPAN-PGFGTWRQAATGAAADFLKVPPSLPAEYAACLSVNPCTAFRLLRDFQELGEGDVIIQNGANSMVGMAVIQMAKARGITTVNVVRNRPQGQEVMQFLKDLGGDVVCFDEYV-NTYRFERLMADLPKPKLALNCVGGPSAANL 265          
BLAST of mRNA_H-elongata_contig77504.15432.1 vs. uniprot
Match: A0A7K4K3Y0_9AVES (MECR protein (Fragment) n=1 Tax=Crypturellus soui TaxID=458187 RepID=A0A7K4K3Y0_9AVES)

HSP 1 Score: 229 bits (584), Expect = 2.250e-71
Identity = 121/210 (57.62%), Postives = 146/210 (69.52%), Query Frame = 1
Query:   28 VSELGPKEVSVKILFAPINPSDINQVEGSYGVLPPLPAVGGNEGVGEITAVGSAVTRLAVGDWAVPMPASGFGTWRTVAKANEAMLQRCPSDIPAEYAATIGVNPCTAYRLLRDFETLREGDTVIQNGANSQVGMAVIQMARSMGVRTINVVRERPPGDDTVELLKSLGGDVVVTPAVIENPEAFSRAVEGLALPRLGLNCTGGSIATSV 657
            ++ LG  +V VK+L APINP+DIN ++GSY +LP LPAVGGNEGVG +  VGS VT +  GDW +P  A G GTWRT A   EA L R PSD+P   AAT+GVNPCTAYR+L+DFETLR GD+VIQN ANS VG AVIQ+AR+ G+RTINVVR RP     VE L SLG D V+T   +  P+      + +  PRL LNC GG  AT +
Sbjct:   19 LAPLGDADVHVKMLAAPINPADINMIQGSYALLPELPAVGGNEGVGRVLGVGSRVTTVTPGDWVIPADA-GLGTWRTEAVFPEASLLRVPSDLPLLCAATLGVNPCTAYRMLQDFETLRPGDSVIQNAANSGVGQAVIQIARASGIRTINVVRARPDLPKLVERLVSLGADHVITEETLRKPD-MKHIFKSIPRPRLALNCVGGKSATEM 226          
BLAST of mRNA_H-elongata_contig77504.15432.1 vs. uniprot
Match: A0A7K7WMF7_9AVES (MECR protein (Fragment) n=2 Tax=Nothocercus TaxID=1977170 RepID=A0A7K7WMF7_9AVES)

HSP 1 Score: 227 bits (579), Expect = 1.100e-70
Identity = 121/219 (55.25%), Postives = 153/219 (69.86%), Query Frame = 1
Query:    1 LLRLEDDDDVSELGPKEVSVKILFAPINPSDINQVEGSYGVLPPLPAVGGNEGVGEITAVGSAVTRLAVGDWAVPMPASGFGTWRTVAKANEAMLQRCPSDIPAEYAATIGVNPCTAYRLLRDFETLREGDTVIQNGANSQVGMAVIQMARSMGVRTINVVRERPPGDDTVELLKSLGGDVVVTPAVIENPEAFSRAVEGLALPRLGLNCTGGSIATSV 657
            L RL+D + ++ LG  +V +K+L APINP+DIN ++G+YG+L  LPAVGGNEGVG++  VGS VT +  GDW +P  A G GTWRT A   E  L R PSD+P   AAT+GVNPCTAYR+L DFETLR GD+VIQN ANS VG AVIQ+A++ G+RTINVVR RP     VE L SLG D V+T  ++  P+  +   + +  PRL LNC GG  AT +
Sbjct:    6 LSRLKDLE-LAPLGDSDVHIKMLAAPINPADINMIQGTYGLLAQLPAVGGNEGVGQVLGVGSRVTSVGAGDWVIPADA-GLGTWRTEAVFPEEALLRVPSDVPVLCAATLGVNPCTAYRMLADFETLRPGDSVIQNAANSGVGQAVIQIAKASGIRTINVVRARPDLPKLVERLVSLGADHVITEEMLRKPD-MNDIFKSIPKPRLALNCVGGKSATEM 221          
BLAST of mRNA_H-elongata_contig77504.15432.1 vs. uniprot
Match: A0A7K6WML9_STECA (MECR protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7K6WML9_STECA)

HSP 1 Score: 225 bits (574), Expect = 7.470e-70
Identity = 119/219 (54.34%), Postives = 151/219 (68.95%), Query Frame = 1
Query:    1 LLRLEDDDDVSELGPKEVSVKILFAPINPSDINQVEGSYGVLPPLPAVGGNEGVGEITAVGSAVTRLAVGDWAVPMPASGFGTWRTVAKANEAMLQRCPSDIPAEYAATIGVNPCTAYRLLRDFETLREGDTVIQNGANSQVGMAVIQMARSMGVRTINVVRERPPGDDTVELLKSLGGDVVVTPAVIENPEAFSRAVEGLALPRLGLNCTGGSIATSV 657
            L RL+D + V+ELG  +V VK+L APINP+DIN ++G+Y +L PLPAVGGNEGVGE+  VG  VT L  GDW +P  ++G GTWRT     E ML + PSDIP   AAT+ VNPCTAYR+L DFETL  GD++IQN ANS VG AVIQ+A++ G++TINVVR+RP     VE L +LG D V+T  ++  PE      + +  PRL LNC GG   T +
Sbjct:   12 LFRLKDLE-VTELGDSDVHVKMLAAPINPADINMIQGTYAILSPLPAVGGNEGVGEVLEVGRRVTALKPGDWVIP-GSTGLGTWRTQGVFPEEMLLKVPSDIPVLCAATLSVNPCTAYRMLTDFETLAPGDSIIQNAANSGVGQAVIQIAKASGIKTINVVRDRPDFPKLVERLMALGADHVITEEMLRKPE-MKDIFKSIPKPRLALNCVGGKSTTEM 227          
BLAST of mRNA_H-elongata_contig77504.15432.1 vs. uniprot
Match: UPI001B353C6F (enoyl-[acyl-carrier-protein] reductase, mitochondrial isoform X1 n=2 Tax=Ochotona curzoniae TaxID=130825 RepID=UPI001B353C6F)

HSP 1 Score: 228 bits (580), Expect = 7.790e-70
Identity = 118/217 (54.38%), Postives = 156/217 (71.89%), Query Frame = 1
Query:    7 RLEDDDDVSELGPKEVSVKILFAPINPSDINQVEGSYGVLPPLPAVGGNEGVGEITAVGSAVTRLAVGDWAVPMPASGFGTWRTVAKANEAMLQRCPSDIPAEYAATIGVNPCTAYRLLRDFETLREGDTVIQNGANSQVGMAVIQMARSMGVRTINVVRERPPGDDTVELLKSLGGDVVVTPAVIENPEAFSRAVEGLALPRLGLNCTGGSIATSV 657
            R+  + +++ +G  +V V++L APINPSDIN ++G+YG+LP LPAVGGNEGVG++ AVGS+VT L  GDW +P  A G GTWRT A  NE  +   PSDIP + AAT+GVNPCTAYR+LRDFE L+ GD+VIQN +NS VG AVIQ+A ++G+RTINVVR+RP   +    LKSLG + VVT   +  PE  + + + +  PRL LNC GG  +T +
Sbjct:   90 RVLKNTELAAMGGSDVRVRMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVGQVLAVGSSVTTLKPGDWVIPASA-GLGTWRTEAVFNEEAVIGIPSDIPLQSAATLGVNPCTAYRMLRDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPNLQELTNRLKSLGAEHVVTEEDLRKPETRA-SFKDMPPPRLALNCVGGKSSTEL 304          
BLAST of mRNA_H-elongata_contig77504.15432.1 vs. uniprot
Match: A0A851M2V2_CORCR (MECR protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A851M2V2_CORCR)

HSP 1 Score: 222 bits (566), Expect = 9.240e-70
Identity = 118/219 (53.88%), Postives = 150/219 (68.49%), Query Frame = 1
Query:    1 LLRLEDDDDVSELGPKEVSVKILFAPINPSDINQVEGSYGVLPPLPAVGGNEGVGEITAVGSAVTRLAVGDWAVPMPASGFGTWRTVAKANEAMLQRCPSDIPAEYAATIGVNPCTAYRLLRDFETLREGDTVIQNGANSQVGMAVIQMARSMGVRTINVVRERPPGDDTVELLKSLGGDVVVTPAVIENPEAFSRAVEGLALPRLGLNCTGGSIATSV 657
            L RL+D + V++LG  +V VK+L APINP+DIN ++G+Y +L PLPAVGGNEGVGE+  VG  VT L  GDW +P  ++G GTWRT     E  L + PSDIP   AAT+ VNPCTAYR+L DFETL  GD+VIQN ANS VG AVIQ+A++ G++TINVVR+RP     VE L +LG D V+T  ++  PE      + +  PRL LNC GG   T +
Sbjct:    6 LFRLKDLE-VAQLGDSDVHVKMLAAPINPADINMIQGTYAILSPLPAVGGNEGVGEVLEVGRRVTALRPGDWVIPA-STGLGTWRTQGVFPEETLLKVPSDIPVLCAATLSVNPCTAYRMLADFETLAPGDSVIQNAANSGVGQAVIQIAKASGIKTINVVRDRPDLPKLVERLMALGADHVITEEMLRKPE-MKDIFKSIPKPRLALNCVGGKSTTEM 221          
BLAST of mRNA_H-elongata_contig77504.15432.1 vs. uniprot
Match: A0A7K7BBU5_9AVES (MECR protein (Fragment) n=5 Tax=Nothoprocta TaxID=8806 RepID=A0A7K7BBU5_9AVES)

HSP 1 Score: 224 bits (571), Expect = 2.120e-69
Identity = 121/219 (55.25%), Postives = 150/219 (68.49%), Query Frame = 1
Query:    1 LLRLEDDDDVSELGPKEVSVKILFAPINPSDINQVEGSYGVLPPLPAVGGNEGVGEITAVGSAVTRLAVGDWAVPMPASGFGTWRTVAKANEAMLQRCPSDIPAEYAATIGVNPCTAYRLLRDFETLREGDTVIQNGANSQVGMAVIQMARSMGVRTINVVRERPPGDDTVELLKSLGGDVVVTPAVIENPEAFSRAVEGLALPRLGLNCTGGSIATSV 657
            L RLED + ++ LG  +V VK+L APINP+DIN ++G+Y +LP LPAVGGNEGVG +  VG  VT +  GDW +P  A G GTWRT A   E  L R P D+P   AAT+GVNPCTAYR+L DFE+LR GD+VIQN ANS VG AVIQ+AR+ G+RTINVVR+RP     VE L SLG D V+T  ++  P+      + +  PRL LNC GG  AT +
Sbjct:   12 LSRLEDLE-LAPLGDSDVHVKMLAAPINPADINMIQGTYALLPELPAVGGNEGVGRVLGVGRRVTSVTPGDWVLPADA-GLGTWRTEAVFPEQSLLRVPRDVPVLCAATLGVNPCTAYRMLADFESLRPGDSVIQNAANSGVGQAVIQIARATGIRTINVVRDRPDLPKLVERLVSLGADHVITEEMLRKPD-MKDIFKSIPKPRLALNCVGGKSATEM 227          
BLAST of mRNA_H-elongata_contig77504.15432.1 vs. uniprot
Match: UPI0003344570 (trans-2-enoyl-CoA reductase, mitochondrial isoform X1 n=4 Tax=Talpidae TaxID=9373 RepID=UPI0003344570)

HSP 1 Score: 225 bits (574), Expect = 2.570e-69
Identity = 113/213 (53.05%), Postives = 153/213 (71.83%), Query Frame = 1
Query:   19 DDDVSELGPKEVSVKILFAPINPSDINQVEGSYGVLPPLPAVGGNEGVGEITAVGSAVTRLAVGDWAVPMPASGFGTWRTVAKANEAMLQRCPSDIPAEYAATIGVNPCTAYRLLRDFETLREGDTVIQNGANSQVGMAVIQMARSMGVRTINVVRERPPGDDTVELLKSLGGDVVVTPAVIENPEAFSRAVEGLALPRLGLNCTGGSIATSV 657
            + +++ +G  ++ VK+L APINPSDIN ++G+YG+LPPLPAVGGNEGVG++ AVGS+VT +  GDW +P  A G GTWRT A  +E +L   PSDIP + AAT+GVNPCTAYR+L DFE LR GD++IQN +NS VG AVIQ+A ++G+RTINVVR+RP      + LK+LG + V+T   +   E   +  + +  PRL LNC GG  +T +
Sbjct:   62 NQELAAVGRSDIHVKMLAAPINPSDINMIQGNYGLLPPLPAVGGNEGVGQVVAVGSSVTAMKPGDWVIPASA-GLGTWRTEAVFSEEVLIGVPSDIPLQSAATLGVNPCTAYRMLMDFEQLRPGDSIIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLTDRLKNLGAEHVITEEELRKHE-MKKFFKDMPQPRLALNCVGGKSSTEL 272          
BLAST of mRNA_H-elongata_contig77504.15432.1 vs. uniprot
Match: F7DH27_ORNAN (Mitochondrial trans-2-enoyl-CoA reductase n=2 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=F7DH27_ORNAN)

HSP 1 Score: 225 bits (573), Expect = 3.340e-69
Identity = 117/213 (54.93%), Postives = 149/213 (69.95%), Query Frame = 1
Query:   19 DDDVSELGPKEVSVKILFAPINPSDINQVEGSYGVLPPLPAVGGNEGVGEITAVGSAVTRLAVGDWAVPMPASGFGTWRTVAKANEAMLQRCPSDIPAEYAATIGVNPCTAYRLLRDFETLREGDTVIQNGANSQVGMAVIQMARSMGVRTINVVRERPPGDDTVELLKSLGGDVVVTPAVIENPEAFSRAVEGLALPRLGLNCTGGSIATSV 657
            D ++   G +EV VK+L AP+NP+DIN V+G+Y +LP LPAVGGNEGVG++ AVG  VT L  GDW +P  A GFGTWRT    +E +L + P D+P   AAT+GVNPCTAYR+L DFE L+ GDTVIQNGANS VG AVIQ+A + G+RT+NVVR+RP   + V+ LK+LG D V+T   + NPE      +    PRL LNC GG  +T +
Sbjct:   59 DVELRTPGGREVQVKMLAAPVNPADINMVQGTYALLPALPAVGGNEGVGQVVAVGGDVTSLEPGDWVIPADA-GFGTWRTDVVLSEEVLVKVPRDLPLLCAATLGVNPCTAYRMLMDFEDLQPGDTVIQNGANSGVGQAVIQIAAARGLRTVNVVRDRPNIQELVDRLKALGADHVITEERLRNPE-MKFLFKSTPQPRLALNCIGGKSSTEL 269          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77504.15432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCE2_9PHAE8.030e-12785.39PKS_ER domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6S9DR41_HETAK7.690e-7354.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7K4K3Y0_9AVES2.250e-7157.62MECR protein (Fragment) n=1 Tax=Crypturellus soui ... [more]
A0A7K7WMF7_9AVES1.100e-7055.25MECR protein (Fragment) n=2 Tax=Nothocercus TaxID=... [more]
A0A7K6WML9_STECA7.470e-7054.34MECR protein (Fragment) n=2 Tax=Neognathae TaxID=8... [more]
UPI001B353C6F7.790e-7054.38enoyl-[acyl-carrier-protein] reductase, mitochondr... [more]
A0A851M2V2_CORCR9.240e-7053.88MECR protein (Fragment) n=2 Tax=Neognathae TaxID=8... [more]
A0A7K7BBU5_9AVES2.120e-6955.25MECR protein (Fragment) n=5 Tax=Nothoprocta TaxID=... [more]
UPI00033445702.570e-6953.05trans-2-enoyl-CoA reductase, mitochondrial isoform... [more]
F7DH27_ORNAN3.340e-6954.93Mitochondrial trans-2-enoyl-CoA reductase n=2 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77504contigH-elongata_contig77504:371..2853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.9
Seed ortholog evalue3.9e-103
Seed eggNOG ortholog2880.D8LGS4
Preferred nameMECR
KEGG rclassRC00005,RC00052
KEGG koko:K00344,ko:K07512,ko:K10777,ko:K12599
KEGG ReactionR00381,R01278,R03776,R03856,R03989,R04753,R06985,R07162
KEGG Pathwayko00062,ko01100,ko01212,ko03018,ko03450,map00062,map01100,map01212,map03018,map03450
KEGG ModuleM00085,M00392
GOsGO:0001655,GO:0001822,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0009056,GO:0009058,GO:0009060,GO:0009062,GO:0009888,GO:0009987,GO:0015980,GO:0016042,GO:0016053,GO:0016054,GO:0016491,GO:0016627,GO:0016628,GO:0016631,GO:0016922,GO:0019166,GO:0019395,GO:0019752,GO:0030258,GO:0031974,GO:0032501,GO:0032502,GO:0032787,GO:0034440,GO:0035257,GO:0035295,GO:0039019,GO:0039020,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046394,GO:0046395,GO:0046872,GO:0046914,GO:0048513,GO:0048731,GO:0048793,GO:0048856,GO:0051427,GO:0055114,GO:0060429,GO:0061326,GO:0070013,GO:0071704,GO:0072001,GO:0072006,GO:0072009,GO:0072073,GO:0072080,GO:0072329,GO:0072330,GO:1901575,GO:1901576
EggNOG free text desc.fatty acid biosynthetic process
EggNOG OGsCOG0604@1,KOG0025@2759
EC1.3.1.38,1.6.5.5,6.5.1.1
COG Functional cat.C
BiGG ReactioniMM904.YBR026C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTrans-2-enoyl-CoA reductase, mitochondrial precursor
Ec32 orthologEc-07_005200.1
Exons5
Model size663
Cds size663
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77504.15432.1prot_H-elongata_contig77504.15432.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77504 371..2853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.7511532-CDS-H-elongata_contig77504:370..4721622931180.7511532-CDS-H-elongata_contig77504:370..472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77504 371..472 +
1691679731.3196287-CDS-H-elongata_contig77504:370..4721691679731.3196287-CDS-H-elongata_contig77504:370..472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77504 371..472 +
1622931180.7645347-CDS-H-elongata_contig77504:881..10551622931180.7645347-CDS-H-elongata_contig77504:881..1055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77504 882..1055 +
1691679731.332826-CDS-H-elongata_contig77504:881..10551691679731.332826-CDS-H-elongata_contig77504:881..1055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77504 882..1055 +
1622931180.7776773-CDS-H-elongata_contig77504:1846..19931622931180.7776773-CDS-H-elongata_contig77504:1846..1993Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77504 1847..1993 +
1691679731.3495102-CDS-H-elongata_contig77504:1846..19931691679731.3495102-CDS-H-elongata_contig77504:1846..1993Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77504 1847..1993 +
1622931180.7987177-CDS-H-elongata_contig77504:2213..22811622931180.7987177-CDS-H-elongata_contig77504:2213..2281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77504 2214..2281 +
1691679731.3583193-CDS-H-elongata_contig77504:2213..22811691679731.3583193-CDS-H-elongata_contig77504:2213..2281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77504 2214..2281 +
1622931180.8211107-CDS-H-elongata_contig77504:2681..28531622931180.8211107-CDS-H-elongata_contig77504:2681..2853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77504 2682..2853 +
1691679731.3686044-CDS-H-elongata_contig77504:2681..28531691679731.3686044-CDS-H-elongata_contig77504:2681..2853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77504 2682..2853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77504.15432.1

>prot_H-elongata_contig77504.15432.1 ID=prot_H-elongata_contig77504.15432.1|Name=mRNA_H-elongata_contig77504.15432.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=221bp
LLRLEDDDDVSELGPKEVSVKILFAPINPSDINQVEGSYGVLPPLPAVGG
NEGVGEITAVGSAVTRLAVGDWAVPMPASGFGTWRTVAKANEAMLQRCPS
DIPAEYAATIGVNPCTAYRLLRDFETLREGDTVIQNGANSQVGMAVIQMA
RSMGVRTINVVRERPPGDDTVELLKSLGGDVVVTPAVIENPEAFSRAVEG
LALPRLGLNCTGGSIATSVR*
back to top

mRNA from alignment at H-elongata_contig77504:371..2853+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77504.15432.1 ID=mRNA_H-elongata_contig77504.15432.1|Name=mRNA_H-elongata_contig77504.15432.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2483bp|location=Sequence derived from alignment at H-elongata_contig77504:371..2853+ (Himanthalia elongata Himel1 dioecious)
CTTCTTAGGCTAGAGGATGATGATGACGTGAGCGAGCTAGGCCCGAAGGA GGTGTCAGTGAAGATACTCTTCGCACCGATCAATCCGTCCGACATCAATC AGGTACCCAACACGTTTTTGGTCATGTGCGACGAGGTGGAATCCAGATAT ATCACCTACGATGTGTTGCGCGTATAGAGAGGACCCTATCTGCTACTCGT GCGCACGACAGCTGGTGGTCTGGTGAAAATAAGCATGGCGATCTGACCAC CTTCCTTCCCTTGAACTTAAGCGTTTCCAACGGAAAATTTGAAAGGAAGG TGTTTGTTGGGAAGAAAACGACCCGAGGCGGGCTGTGAAATACGCTTATG CTACAACGGCGCTATTCGATACGATTGAAAAATGTTGTCCCATCTACAGT ATCTACATTATCGTATTTACCAACGGTACTTGCGTCGCCCATAACGCCCC CCCCCCTTCCCGCCCGCAGAACAAATAGAAACCCTCTCTAAAACTGTACA TTCCGCGGCAGGTGGAAGGATCCTACGGTGTTTTGCCACCTCTTCCTGCG GTCGGCGGTAACGAGGGGGTGGGAGAGATCACGGCAGTGGGATCCGCTGT CACTCGCCTCGCGGTCGGAGACTGGGCGGTGCCTATGCCGGCTTCGGGAT TCGGAACCTGGAGAACCGTGGCCAAGGCCAACGAGGTGCGTTACGGCCGC AGTGTACCGTATATCAACGGAAGCGAGAGGTGTGGTGTTCGACGAGCGAA TACGTACGGGACAATGACGGGATCCCCGACATTGTTAACCGTTAACCCGA TGAATTTACAACCGGGGAACACGAATAATCACATATGATGATTTTGTTGT TAAATGTAGTGTAAATACCCACATTCGAACCTGGTCCCCTGGACTTCACC TCTAATGATGCTAAGAAGGCGTCGATGTTCGGAGGGTTCTAATGAGTTCA TATATTTAAAAATAAGAATACGATTAGTATTTAAGGTAATATTTGATGTT GCTCGGGTGACCGTTGGAGGATGATCCGGATCACAAATCCTGATCGCTCG TGCCACTGTTTACAAAGCAGGAAACCAAAGCCTGAATTGATAGGCAAGGT AATTCTGGGAGACGATAAAGGGAGGTTAAGCGGTGGAAAAGTCGCATATC CTTTCGATGGCTTGGTGCCTTGTGTCGCATTTGGCTTCGCCCGGCGTAAT GACGTCACAATATGTACGTGTTGCCAACCTGTTTGACTGTCATGCGCCTA AACATCCGCGAAAACAATGTGGGAAAAATACTACATGCACGAGCGGCGAC GAAATATTCAATATTCCTTGTACCCTGGTGTACTATAAGAATCCCCCACA CATTACTGCCCTCGAGTTGGAACGCCTGCGCTTCCTCTTCCGTTCTTTCA GCGTAAGGAGGTATTCACGCACCGCGGAGCTCAATGATTTACCGCTACGC CGTGTTCGCCACTCGAACTCCTTCAGGCCATGCTGCAGAGATGTCCCTCG GACATCCCCGCGGAGTACGCGGCAACCATCGGGGTCAACCCTTGCACGGC TTACCGACTTCTCCGTGACTTCGAGACCCTGCGCGAGGGCGACACCGTCA TCCAGAACGGCGCGAACAGCCAGGTGTACTGGAGCGATACGAGACTTGAG ACGGCGAGAACGAACGGCAGAAACGTCGACACTTCCGTGTTTTTTTTGCC GACTGGTAACCTTCAGCGTCATAGTCTAATGAGGAATACCAACGAAACTC AATTTGCTCTGGTCAACCTCCGCCATGCTATCCGCTTTCTCTCGACGGCA ATGTTTTTCCTTCACCGGTGTCTCTTTCGCGAATCCCCCAAAGGTTGGCA TGGCTGTCATCCAGATGGCGAGAAGCATGGGCGTGCGGACTATCAACGTC GTACGAGAACGGTCAGTCTTTTGAGCTATTTGCCGCAAAAAAAATAAAAA CTTGTTTGCGGAAGTACGTGGGTGAGGGACATATCAAACAGCACTCATAG GCATCTTCCGCGGTGTGATCGGTGTATGGTGTGCGCGCGGAGCGGCGAAA ATGGTGCAGTTTGTCGTGATCTAGCGGAGTGTGCTTCCAACCGACTGGCT GGTGGCCTGGGTGGCGGAAGAGCAACGTTTGGACGATATCCTGCCATAAA TTTTCCAAGTCAGCCAGGGTGGGCCGGGTACTCGCGTCTACTGACAAGCC TCTGGAAACGCCAGCAAGCGTATCCCCCTTTTTCAGGCCAAAATCGATTC AGTGTCATGTTTTCCCTCTTAGTCCGTTTCGTGCTGAACCCTCACATCAT TTTGTGTGCAGGCCTCCTGGGGATGACACGGTGGAGCTGCTCAAATCTCT CGGAGGCGATGTCGTGGTGACGCCGGCCGTTATTGAAAACCCAGAGGCGT TCTCCCGGGCCGTGGAAGGCTTGGCGCTGCCTAGGCTGGGTCTCAACTGC ACGGGGGGATCCATAGCGACCTCGGTGAGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig77504:371..2853+

>mRNA_H-elongata_contig77504.15432.1 ID=mRNA_H-elongata_contig77504.15432.1|Name=mRNA_H-elongata_contig77504.15432.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1326bp|location=Sequence derived from alignment at H-elongata_contig77504:371..2853+ (Himanthalia elongata Himel1 dioecious)
CTTCTTAGGCTAGAGGATGATGATGACGTGAGCGAGCTAGGCCCGAAGGA
GGTGTCAGTGAAGATACTCTTCGCACCGATCAATCCGTCCGACATCAATC
AGCTTCTTAGGCTAGAGGATGATGATGACGTGAGCGAGCTAGGCCCGAAG
GAGGTGTCAGTGAAGATACTCTTCGCACCGATCAATCCGTCCGACATCAA
TCAGGTGGAAGGATCCTACGGTGTTTTGCCACCTCTTCCTGCGGTCGGCG
GTAACGAGGGGGTGGGAGAGATCACGGCAGTGGGATCCGCTGTCACTCGC
CTCGCGGTCGGAGACTGGGCGGTGCCTATGCCGGCTTCGGGATTCGGAAC
CTGGAGAACCGTGGCCAAGGCCAACGAGGTGGAAGGATCCTACGGTGTTT
TGCCACCTCTTCCTGCGGTCGGCGGTAACGAGGGGGTGGGAGAGATCACG
GCAGTGGGATCCGCTGTCACTCGCCTCGCGGTCGGAGACTGGGCGGTGCC
TATGCCGGCTTCGGGATTCGGAACCTGGAGAACCGTGGCCAAGGCCAACG
AGGCCATGCTGCAGAGATGTCCCTCGGACATCCCCGCGGAGTACGCGGCA
ACCATCGGGGTCAACCCTTGCACGGCTTACCGACTTCTCCGTGACTTCGA
GACCCTGCGCGAGGGCGACACCGTCATCCAGAACGGCGCGAACAGCCAGG
CCATGCTGCAGAGATGTCCCTCGGACATCCCCGCGGAGTACGCGGCAACC
ATCGGGGTCAACCCTTGCACGGCTTACCGACTTCTCCGTGACTTCGAGAC
CCTGCGCGAGGGCGACACCGTCATCCAGAACGGCGCGAACAGCCAGGTTG
GCATGGCTGTCATCCAGATGGCGAGAAGCATGGGCGTGCGGACTATCAAC
GTCGTACGAGAACGGTTGGCATGGCTGTCATCCAGATGGCGAGAAGCATG
GGCGTGCGGACTATCAACGTCGTACGAGAACGGCCTCCTGGGGATGACAC
GGTGGAGCTGCTCAAATCTCTCGGAGGCGATGTCGTGGTGACGCCGGCCG
TTATTGAAAACCCAGAGGCGTTCTCCCGGGCCGTGGAAGGCTTGGCGCTG
CCTAGGCTGGGTCTCAACTGCACGGGGGGATCCATAGCGACCTCGGTGAG
GTGAGCCTCCTGGGGATGACACGGTGGAGCTGCTCAAATCTCTCGGAGGC
GATGTCGTGGTGACGCCGGCCGTTATTGAAAACCCAGAGGCGTTCTCCCG
GGCCGTGGAAGGCTTGGCGCTGCCTAGGCTGGGTCTCAACTGCACGGGGG
GATCCATAGCGACCTCGGTGAGGTGA
back to top