mRNA_H-elongata_contig77452.15425.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77452.15425.1
Unique NamemRNA_H-elongata_contig77452.15425.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77452.15425.1 vs. uniprot
Match: D7G8V0_ECTSI (ABC1 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V0_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 7.930e-29
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 HADPHRGNLLRTPEGDLAYLDFGMMANVTSEKRYALIGATLGLQNRDMRLIAGNLVTMG 177
            HADPHRGNLLRTPEG+LAYLDFGMMANVT+EKRYALIGAT+GLQNRDMRLIA NLVTMG
Sbjct:  421 HADPHRGNLLRTPEGNLAYLDFGMMANVTAEKRYALIGATMGLQNRDMRLIASNLVTMG 479
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BLAST of mRNA_H-elongata_contig77452.15425.1 vs. uniprot
Match: A0A7S1JWM5_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JWM5_9ALVE)

HSP 1 Score: 102 bits (253), Expect = 7.790e-24
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 HADPHRGNLLRTPEGDLAYLDFGMMANVTSEKRYALIGATLGLQNRDMRLIAGNLVTMG 177
            HADPHRGNLLRTP+G LAYLDFGMMANVT EKRY LIG  LGLQN+D+ L+A NLVT+G
Sbjct:  394 HADPHRGNLLRTPDGSLAYLDFGMMANVTEEKRYGLIGTLLGLQNKDIGLVAENLVTLG 452
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BLAST of mRNA_H-elongata_contig77452.15425.1 vs. uniprot
Match: A0A0G4EKT0_VITBC (Protein kinase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EKT0_VITBC)

HSP 1 Score: 102 bits (253), Expect = 7.940e-24
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 HADPHRGNLLRTPEGDLAYLDFGMMANVTSEKRYALIGATLGLQNRDMRLIAGNLVTMG 177
            HADPHRGNLLRTP+G LAYLDFGMMANVT EKRY LIG  LGLQN+D+ L+A NLVT+G
Sbjct:  379 HADPHRGNLLRTPDGSLAYLDFGMMANVTEEKRYGLIGTLLGLQNKDIGLVAENLVTLG 437
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BLAST of mRNA_H-elongata_contig77452.15425.1 vs. uniprot
Match: A0A7S2XX88_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX88_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.580e-21
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 HADPHRGNLLRTPEGDLAYLDFGMMANVTSEKRYALIGATLGLQNRDMRLIAGNLVTMG 177
            HADPHRGNLLRTP+G LAYLDFGMMANVT E RY+LI  TLGLQ +D+ LI  NL+T+G
Sbjct:  386 HADPHRGNLLRTPDGRLAYLDFGMMANVTDENRYSLIATTLGLQYKDLDLITRNLITLG 444
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BLAST of mRNA_H-elongata_contig77452.15425.1 vs. uniprot
Match: A0A835Z895_9STRA (ABC1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z895_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.490e-21
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 HADPHRGNLLRTPEGDLAYLDFGMMANVTSEKRYALIGATLGLQNRDMRLIAGNLVTMG 177
            HADPHRGNLLR P+G LAYLDFGMM +V +++RYAL+GATLGLQN+D+ ++A NLV +G
Sbjct:  318 HADPHRGNLLRMPDGRLAYLDFGMMCSVPADQRYALVGATLGLQNKDIGMVANNLVKLG 376
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BLAST of mRNA_H-elongata_contig77452.15425.1 vs. uniprot
Match: A0A0G4GBM3_9ALVE (Protein kinase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GBM3_9ALVE)

HSP 1 Score: 91.3 bits (225), Expect = 4.860e-20
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 HADPHRGNLLRTPEGDLAYLDFGMMANVTSEKRYALIGATLGLQNRDMRLIAGNLVTMG 177
            HADPHRGNLLRT + +L YLDFGMMANVT+E+RY LIG  LGLQN D+ LIA NLV +G
Sbjct:  359 HADPHRGNLLRTQDAELCYLDFGMMANVTAEQRYGLIGTLLGLQNGDIGLIAENLVRLG 417
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BLAST of mRNA_H-elongata_contig77452.15425.1 vs. uniprot
Match: A0A7S3UUE8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUE8_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 2.300e-19
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 HADPHRGNLLRTPEGDLAYLDFGMMANVTSEKRYALIGATLGLQNRDMRLIAGNLVTMG 177
            HADPHRGNLL+TP+G LAYLDFGMMANV+   R+ L+ A+LGLQ RD+ LI  NLVT+G
Sbjct:  348 HADPHRGNLLQTPDGRLAYLDFGMMANVSDTNRFGLVAASLGLQYRDLDLITRNLVTLG 406
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BLAST of mRNA_H-elongata_contig77452.15425.1 vs. uniprot
Match: A0A7R9YF06_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF06_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.310e-19
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 HADPHRGNLLRTPEGDLAYLDFGMMANVTSEKRYALIGATLGLQNRDMRLIAGNLVTM 174
            HADPHRGNLL TPEG L YLDFGMM NVT+E R+A+IGA +GLQN+D+ +++ NLV +
Sbjct:  367 HADPHRGNLLLTPEGKLCYLDFGMMVNVTAETRFAMIGAVVGLQNKDIEMVSENLVKL 424
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BLAST of mRNA_H-elongata_contig77452.15425.1 vs. uniprot
Match: A0A7R9ZF24_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZF24_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.210e-18
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 HADPHRGNLLRTPEGDLAYLDFGMMANVTSEKRYALIGATLGLQNRDMRLIAGNLVTMG 177
            HADPHRGNLLRTP+G LA +DFGMMA+V+ E+R+ LIG  +GLQN+D+ L+   L+ +G
Sbjct:   82 HADPHRGNLLRTPDGKLAIIDFGMMADVSEEERFGLIGLVIGLQNKDLPLVTEYLLKLG 140
[Close]
BLAST of mRNA_H-elongata_contig77452.15425.1 vs. uniprot
Match: A0A7S2REA5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2REA5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.550e-18
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 HADPHRGNLLRTPEGDLAYLDFGMMANVTSEKRYALIGATLGLQNRDMRLIAGNLVTMG 177
            H+DPHRGNLL+T EG LA+LDFGMMA+VT E+RY L+G  +GLQN+D+ L+  NL+ +G
Sbjct:  117 HSDPHRGNLLQTSEGSLAFLDFGMMADVTEEERYGLVGLLIGLQNKDLPLVTENLLKLG 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77452.15425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8V0_ECTSI7.930e-2993.22ABC1 family protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S1JWM5_9ALVE7.790e-2479.66Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A0G4EKT0_VITBC7.940e-2479.66Protein kinase domain-containing protein n=2 Tax=V... [more]
A0A7S2XX88_9STRA1.580e-2174.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z895_9STRA7.490e-2169.49ABC1 family protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A0G4GBM3_9ALVE4.860e-2072.88Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A7S3UUE8_HETAK2.300e-1969.49Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9YF06_9STRA2.310e-1967.24Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9ZF24_9STRA2.210e-1861.02Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2REA5_9STRA2.550e-1862.71Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77452contigH-elongata_contig77452:1788..2982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue3.7e-24
Seed eggNOG ortholog2880.D7G8V0
KEGG koko:K08869
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.255273-CDS-H-elongata_contig77452:1787..18691622931180.255273-CDS-H-elongata_contig77452:1787..1869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77452 1788..1869 -
1691679731.0864365-CDS-H-elongata_contig77452:1787..18691691679731.0864365-CDS-H-elongata_contig77452:1787..1869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77452 1788..1869 -
1622931180.2670655-CDS-H-elongata_contig77452:2884..29821622931180.2670655-CDS-H-elongata_contig77452:2884..2982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77452 2885..2982 -
1691679731.0977798-CDS-H-elongata_contig77452:2884..29821691679731.0977798-CDS-H-elongata_contig77452:2884..2982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77452 2885..2982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77452.15425.1prot_H-elongata_contig77452.15425.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77452 1788..2982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77452.15425.1

>prot_H-elongata_contig77452.15425.1 ID=prot_H-elongata_contig77452.15425.1|Name=mRNA_H-elongata_contig77452.15425.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
HADPHRGNLLRTPEGDLAYLDFGMMANVTSEKRYALIGATLGLQNRDMRL
IAGNLVTMG*
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mRNA from alignment at H-elongata_contig77452:1788..2982-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77452.15425.1 ID=mRNA_H-elongata_contig77452.15425.1|Name=mRNA_H-elongata_contig77452.15425.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1195bp|location=Sequence derived from alignment at H-elongata_contig77452:1788..2982- (Himanthalia elongata Himel1 dioecious)
CACGCGGACCCTCACCGGGGCAACCTGCTCCGCACCCCCGAGGGTGACCT
GGCCTACCTGGACTTCGGCATGATGGCGAATGTCACCTCCGAAAAAAGGT
AAAAGGGGGGAGGGGTGGGGGGGGGGGTGACAGCGCCGTGGGTGGGGCCG
CATCGTCATCATCCTTGTGCGATGGCTGGTCACGTTCGACGATTCATCGG
TAGTCTGGATTATAGGGACCATTTTATATTTCCCCGTGCGGCGCAGCAAT
TCACCATGAACCGCTCTAAATCGGCATGATCTATGGTATGATGGCGTGTT
CTTGCTTTTATCGAAAACTGCTGCAAAATATCAGTTTCGTAATATATTCA
GTAGAATACCATAAAATAATGTCATCATTACATTATAATATGGTTCCCCT
CTATTTAGTACCGGTAGGTCGTTTCGATCATCCGAGGAGTACTAAAATCA
CTTCTGATGTAAATGGGGTTTTTTATTGTTTTTTTGCAGGTGTATATATT
TATTGATTTGCTCATAATCGCGCAATCCGGCCCTATACTGTCATCATCCT
TATATAGTTACTTCTATTATAGGCTACTCGCATTGATCATTTGTGTGGTG
TGTGTATGTGTAAATTTATTAATTGTGTACAAGTATGTGTGTTTGTTTTT
AGGAAGAATCTTTTCGCTTCCGTTTTTTGCCTTTTTGCCTTTTTTGCCTT
TTTTGCTGTTTTTAGGACGAAAAAGGGAAACTGTACTATACGATCTTATC
ATTCCACACATCATGCCTAAACACAGACACGCAAACACACATACACACAC
ACACACGGCTGATCAGAGTTTTTTGTAGCAAGTATGATTGAATCCCCCAT
TGGGAGGATCAATGCGAGAGTAGCCTAGAAGAGCTAGCATGACAGAGCCG
GATTGCGCGATTATGTGCAACGTAATAAATAAACACACACATACATACAT
ACTACGTACATACATACATACATACACATACCCCTCTGCCATCCCCGCGA
TGCGATGTGTTAATCCAAATAAAAGACACACACGAGACACGTCGCCTTCC
TCCTCTCATGAAAACCCTTTTGCTTTCCCCCCATCCCACTTCCATATCCT
TACAATAAGAAAGGTACGCGTTGATCGGGGCTACATTGGGCCTGCAGAAC
CGCGACATGCGTCTTATCGCCGGCAACCTGGTTACCATGGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig77452:1788..2982-

>mRNA_H-elongata_contig77452.15425.1 ID=mRNA_H-elongata_contig77452.15425.1|Name=mRNA_H-elongata_contig77452.15425.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig77452:1788..2982- (Himanthalia elongata Himel1 dioecious)
CACGCGGACCCTCACCGGGGCAACCTGCTCCGCACCCCCGAGGGTGACCT
GGCCTACCTGGACTTCGGCATGATGGCGAATGTCACCTCCGAAAAAAGCA
CGCGGACCCTCACCGGGGCAACCTGCTCCGCACCCCCGAGGGTGACCTGG
CCTACCTGGACTTCGGCATGATGGCGAATGTCACCTCCGAAAAAAGGTAC
GCGTTGATCGGGGCTACATTGGGCCTGCAGAACCGCGACATGCGTCTTAT
CGCCGGCAACCTGGTTACCATGGGGTGAGTACGCGTTGATCGGGGCTACA
TTGGGCCTGCAGAACCGCGACATGCGTCTTATCGCCGGCAACCTGGTTAC
CATGGGGTGA
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