mRNA_H-elongata_contig77250.15400.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77250.15400.1
Unique NamemRNA_H-elongata_contig77250.15400.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77250.15400.1 vs. uniprot
Match: D8LT96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT96_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.330e-25
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:   28 QGWLELNPSNMAAVFCANGKARTSVLLACFLRFEGEESSALEAYRRVCAKRDPTQEPEQASL 213
            +GWL+L+P NMAAVFCANGKARTSVLLAC+LRFEGEES+ALEAYRRV AKRDP Q+PEQ  L
Sbjct:  147 KGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKRDPEQKPEQVIL 208
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BLAST of mRNA_H-elongata_contig77250.15400.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.220e-25
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:   28 QGWLELNPSNMAAVFCANGKARTSVLLACFLRFEGEESSALEAYRRVCAKRDPTQEPEQASL 213
            +GWL+L+P NMAAVFCANGKARTSVLLAC+LRFEGEES+ALEAYRRV AKRDP Q+PEQ  L
Sbjct:  147 KGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKRDPEQKPEQVIL 208
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BLAST of mRNA_H-elongata_contig77250.15400.1 vs. uniprot
Match: A0A7R9U6K4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6K4_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.430e-6
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:   22 AKQGWLELNPSNMAAVFCANGKARTSVLLACFLRFEGEESSALEAYRRVCAKR 180
            A + W +L   ++A V C NGK RTS+LLAC+LR+ GE+SS  E +     +R
Sbjct:   27 AIKAWCDLGMDHLAIVCCENGKTRTSLLLACYLRYCGEKSSVAEGFNAFYMRR 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77250.15400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LT96_ECTSI2.330e-2582.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR06_9PHAE3.220e-2582.26FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7R9U6K4_9STRA5.430e-645.28Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77250contigH-elongata_contig77250:2061..2276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog2880.D8LT96
KEGG koko:K18080
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG2283@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.8036957-CDS-H-elongata_contig77250:2060..22761622931177.8036957-CDS-H-elongata_contig77250:2060..2276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77250 2061..2276 -
1691679730.276345-CDS-H-elongata_contig77250:2060..22761691679730.276345-CDS-H-elongata_contig77250:2060..2276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77250 2061..2276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77250.15400.1prot_H-elongata_contig77250.15400.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77250 2061..2276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77250.15400.1

>prot_H-elongata_contig77250.15400.1 ID=prot_H-elongata_contig77250.15400.1|Name=mRNA_H-elongata_contig77250.15400.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MRHFTYTAKQGWLELNPSNMAAVFCANGKARTSVLLACFLRFEGEESSAL
EAYRRVCAKRDPTQEPEQASL*
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mRNA from alignment at H-elongata_contig77250:2061..2276-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77250.15400.1 ID=mRNA_H-elongata_contig77250.15400.1|Name=mRNA_H-elongata_contig77250.15400.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig77250:2061..2276- (Himanthalia elongata Himel1 dioecious)
ATGCGCCATTTTACTTATACTGCTAAACAGGGCTGGCTGGAGCTCAACCC
GTCGAATATGGCGGCCGTGTTTTGCGCTAACGGCAAGGCCCGGACATCCG
TGCTCCTAGCTTGCTTCCTTCGGTTTGAAGGGGAGGAATCTTCCGCACTG
GAGGCATATCGACGAGTTTGTGCGAAGCGGGATCCGACGCAGGAACCCGA
GCAGGCGAGTCTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig77250:2061..2276-

>mRNA_H-elongata_contig77250.15400.1 ID=mRNA_H-elongata_contig77250.15400.1|Name=mRNA_H-elongata_contig77250.15400.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig77250:2061..2276- (Himanthalia elongata Himel1 dioecious)
ATGCGCCATTTTACTTATACTGCTAAACAGGGCTGGCTGGAGCTCAACCC
GTCGAATATGGCGGCCGTGTTTTGCGCTAACGGCAAGGCCCGGACATCCG
TGCTCCTAGCTTGCTTCCTTCGGTTTGAAGGGGAGGAATCTTCCGCACTG
GAGGCATATCGACGAGTTTGTGCGAAGCGGGATCCGACGCAGGAACCCGA
GCAGGCGAGTCTTTAAATGCGCCATTTTACTTATACTGCTAAACAGGGCT
GGCTGGAGCTCAACCCGTCGAATATGGCGGCCGTGTTTTGCGCTAACGGC
AAGGCCCGGACATCCGTGCTCCTAGCTTGCTTCCTTCGGTTTGAAGGGGA
GGAATCTTCCGCACTGGAGGCATATCGACGAGTTTGTGCGAAGCGGGATC
CGACGCAGGAACCCGAGCAGGCGAGTCTTTAA
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