mRNA_H-elongata_contig77108.15384.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77108.15384.1
Unique NamemRNA_H-elongata_contig77108.15384.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77108.15384.1 vs. uniprot
Match: D7FZ88_ECTSI (Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ88_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 1.720e-126
Identity = 210/291 (72.16%), Postives = 231/291 (79.38%), Query Frame = 1
Query:  289 LPPPPCIDDFDVGQELGRGGFAVVYRARVRASGREVALKVVDKTRACEHLSGTS---------------MGDGVALACARVANEVRLHWGLKHPTVVEMLDFFEDDRFVYLVLELCGGGDLYRRLR--------KGGPLGERDAAGYMGQLLAGLAYLHERGVMHRDLKLSNLLLTEDGRRLRIADFGLAAKLENDDRERDTICGTPNYMAPEVQGP------------GYGLSADMWSAGCLFYTMVTGVAPFQGRRVGETLANARAGHYMEPEGLSASAKDFLSSMLSL 1056
            LP PPCIDDFDVGQELG+GGFAVVYRARVR++G EVALKVVDK RA EHL GT+               +G G+ LACARVANEVRLHWGL+HP VVE+L+FFED+RFVYLVLELCGGGDLYRRLR          GPL ER+AAGYMGQLLAGL YLHE G+MHRDLKLSNLLL+EDGRRLRIADFGLA KLE +D ER T+CGTPN MAPEVQGP            GYGLSAD+WSAGCL YTM+TG APFQGRRVG+TLANAR+G Y  PEGLS  A+DFL+SMLSL
Sbjct:   14 LPVPPCIDDFDVGQELGKGGFAVVYRARVRSTGLEVALKVVDKHRAAEHLRGTATXXXXXXXXXXXXXGLGGGLELACARVANEVRLHWGLRHPAVVELLEFFEDERFVYLVLELCGGGDLYRRLRGAGGSSSGSSGPLDEREAAGYMGQLLAGLQYLHESGIMHRDLKLSNLLLSEDGRRLRIADFGLAVKLEAEDSERHTLCGTPNTMAPEVQGPVYGASAAGQQPGGYGLSADLWSAGCLLYTMLTGRAPFQGRRVGDTLANARSGRYAVPEGLSDIARDFLASMLSL 304          
BLAST of mRNA_H-elongata_contig77108.15384.1 vs. uniprot
Match: A0A6H5L179_9PHAE (Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L179_9PHAE)

HSP 1 Score: 403 bits (1035), Expect = 6.470e-125
Identity = 210/299 (70.23%), Postives = 238/299 (79.60%), Query Frame = 1
Query:  265 EGVSGKPS-LPPPPCIDDFDVGQELGRGGFAVVYRARVRASGREVALKVVDKTRACEHLSGTS-------------MGDGVALACARVANEVRLHWGLKHPTVVEMLDFFEDDRFVYLVLELCGGGDLYRRLRKGG---------PLGERDAAGYMGQLLAGLAYLHERGVMHRDLKLSNLLLTEDGRRLRIADFGLAAKLENDDRERDTICGTPNYMAPEVQGP------------GYGLSADMWSAGCLFYTMVTGVAPFQGRRVGETLANARAGHYMEPEGLSASAKDFLSSMLSL 1056
            + V+G+ + LP PPCIDDFDVGQELG+GGFAVVYRARVR++G EVALKVVDK RA EHL GT+             +G G+ LACARVANEVRLHWGL+HP VVE+L+FFED+RFVYLVLELCGGGD+YRRLR  G         PL ER+AAGYMGQLLAGL YLHE G+MHRDLKLSNLLL+EDGRRLRIADFGLA KLE +D ER T+CGTPN MAPEVQGP            GYGL+AD+WSAGCL YTM+TG APFQGRRVG+TLANAR+G Y  PEGLS +A+DFL+SMLSL
Sbjct:    4 DAVAGEGAPLPVPPCIDDFDVGQELGKGGFAVVYRARVRSTGLEVALKVVDKHRAAEHLRGTATSAGGGGGDREGGLGGGLELACARVANEVRLHWGLRHPAVVELLEFFEDERFVYLVLELCGGGDMYRRLRGAGSSGSSGSRGPLDEREAAGYMGQLLAGLQYLHESGIMHRDLKLSNLLLSEDGRRLRIADFGLAVKLEAEDSERHTLCGTPNTMAPEVQGPVYGASAAGQQPGGYGLAADLWSAGCLLYTMLTGRAPFQGRRVGDTLANARSGRYAVPEGLSDTARDFLASMLSL 302          
BLAST of mRNA_H-elongata_contig77108.15384.1 vs. uniprot
Match: A0A4P9W4A5_9FUNG (Kinase-like domain-containing protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W4A5_9FUNG)

HSP 1 Score: 226 bits (577), Expect = 2.690e-69
Identity = 123/252 (48.81%), Postives = 165/252 (65.48%), Query Frame = 1
Query:  313 DFDVGQELGRGGFAVVYRARVRASG---REVALKVVDKTRACEHLSGTSMGDGVALACARVANEVRLHWGLKHPTVVEMLDFFEDDRFVYLVLELCGGGDLYRRL--RKGGPLGERDAAGYMGQLLAGLAYLHERGVMHRDLKLSNLLLTEDGRRLRIADFGLAAKLENDDRERDTICGTPNYMAPE-VQGPGYGLSADMWSAGCLFYTMVTGVAPFQGRRVGETLANARAGHYMEPEGLSASAKDFLSSML 1050
            D++VG+ +GRGGF  V+RA  +A G   REVA+K++DK      +  + M         RVANEV +HW L HP+++E+  +FEDD +VYLV ELCG G+LYR +  R   PL E +A G +  L+ GL YLH  G++HRDLKLSNLLLT D   L+IADFGLA KL + D E+ T+CGTPNY++PE V    YGL++D+WS GC+  T++TG  PF+ + V  TL     G YM P+ LS  AKD +  +L
Sbjct:    1 DYEVGEMIGRGGFGFVHRAVSKAKGTPGREVAIKMIDKRL----MKASKM-------TRRVANEVEIHWQLHHPSILELHTYFEDDAYVYLVTELCGNGELYRYVQNRASCPLSENEARGILVMLIRGLLYLHANGIIHRDLKLSNLLLT-DSFDLKIADFGLAVKLADPDSEQKTMCGTPNYISPEIVSRQPYGLASDVWSLGCMVVTLLTGKPPFESQAVKMTLDKVSRGEYMLPDSLSPVAKDLIQKLL 240          
BLAST of mRNA_H-elongata_contig77108.15384.1 vs. uniprot
Match: M4SZK9_9BILA (Polo-like kinase 4 (Fragment) n=2 Tax=Brachionus TaxID=10194 RepID=M4SZK9_9BILA)

HSP 1 Score: 206 bits (524), Expect = 1.030e-60
Identity = 112/257 (43.58%), Postives = 165/257 (64.20%), Query Frame = 1
Query:  289 LPPPPCIDDFDVGQELGRGGFAVVYRARVRASGREVALKVVDKTRACEHLSGTSMGDGVALACARVANEVRLHWGLKHPTVVEMLDFFEDDRFVYLVLELCGGGDL--YRRLRKGGPLGERDAAGYMGQLLAGLAYLHERGVMHRDLKLSNLLLTEDGRRLRIADFGLAAKLENDDRERDTICGTPNYMAPEVQGPG-YGLSADMWSAGCLFYTMVTGVAPFQGRRVGETLANARAGHYMEPEGLSASAKDFLSSML 1050
            +P    I D++V ++LG+GGFA VYRA+V+ASG+EVA+K++DK    + +  + M         RV +EV++H+ LKHP+++E+  FFED  +VYLVLELC  G++  Y + R    L E +   Y+ Q++ G+ YLH  G++HRDL LSNLLLT++   ++IADFGLA KL   D +  T+CGTPN+++PE+     +GL AD+WS GC+ YT +TG  PF    V  TL       Y  P  +S  A+D ++S+L
Sbjct:    1 MPSNESIKDYNVFEQLGQGGFAQVYRAQVKASGKEVAIKMIDK----KTMKASRMTQ-------RVEHEVKIHYQLKHPSILELYTFFEDKNYVYLVLELCHNGEMQQYLKSRPRPNLDEDETRHYLKQVIDGMVYLHSYGILHRDLTLSNLLLTKE-MNVKIADFGLATKLNIPDEKHFTMCGTPNFISPEIASRNAHGLEADVWSLGCMMYTFLTGKPPFDTDGVRNTLNRVVNSDYEMPGYVSPEAQDLIASLL 245          
BLAST of mRNA_H-elongata_contig77108.15384.1 vs. uniprot
Match: A0A4P9XBI6_9FUNG (Aurora kinase (Fragment) n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9XBI6_9FUNG)

HSP 1 Score: 204 bits (520), Expect = 1.250e-60
Identity = 113/256 (44.14%), Postives = 163/256 (63.67%), Query Frame = 1
Query:  298 PPCIDDFDVGQELGRGGFAVVYRARVRA---SGREVALKVVDKTRACEHLSGTSMGDGVALACARVANEVRLHWGLKHPTVVEMLDFFEDDRFVYLVLELCGGGDLYRRLRKGGPLGERDAAGYMGQLLAGLAYLHERGVMHRDLKLSNLLLTEDGRRLRIADFGLAAKLENDDR-ERDTICGTPNYMAPE-VQGPGYGLSADMWSAGCLFYTMVTGVAPFQGRRVGETLANARAGHYMEPEGLSASAKDFLSSML 1050
            P  I D+DV   LGRGGF VVYRA  +    SG  VA+K++DK R    +   +M +       RV NEV++HW L HP+++ + ++FEDD  VYLV+ELC  G+L+  L  G P+ E     ++ Q++ G+ YLH++G++HRDLKL+NLLLT   + ++IADFGLA K+ +    E+ T+CGTPNY++PE V    YGL++D+WS GC+F+T++TG  PF+   V  TL       Y  P+ +S  AKD L  +L
Sbjct:    6 PDRITDYDVRDLLGRGGFGVVYRAFCQHGPHSGEAVAIKMIDKKR----MHAANMTE-------RVVNEVQVHWHLHHPSILSLHEYFEDDETVYLVMELCQRGELFHYLG-GRPISEEQIRPWLYQIIEGIEYLHDQGIIHRDLKLANLLLTAS-KTVKIADFGLAVKMSHPAHAEQKTLCGTPNYISPEIVSRQPYGLASDLWSLGCMFFTLLTGHPPFESHEVAATLERVARVAYDVPDHVSPEAKDMLRRLL 248          
BLAST of mRNA_H-elongata_contig77108.15384.1 vs. uniprot
Match: A0A1R2CUB6_9CILI (Aurora kinase n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CUB6_9CILI)

HSP 1 Score: 210 bits (534), Expect = 4.410e-60
Identity = 105/249 (42.17%), Postives = 156/249 (62.65%), Query Frame = 1
Query:  307 IDDFDVGQELGRGGFAVVYRARVRASGREVALKVVDKTRACEHLSGTSMGDGVALACARVANEVRLHWGLKHPTVVEMLDFFEDDRFVYLVLELCGGGDLYRRLRKGGPLGERDAAGYMGQLLAGLAYLHERGVMHRDLKLSNLLLTEDGRRLRIADFGLAAKLENDDRERDTICGTPNYMAPEV-QGPGYGLSADMWSAGCLFYTMVTGVAPFQGRRVGETLANARAGHYMEPEGLSASAKDFLSSML 1050
            + D+++   LG G ++ VY+ + RAS  E ALK+++K +             V+    R+ NE+ L   L HP +V++ + FED+  +YLVLELC GG+LY ++++ G L E +A      ++ GL YLH  G++HRDLKL NLLL+ED   ++IADFGLA KL+N   ER+T+CGTPNY++PE+     YGL++DMWS GC+ +  +TG  PFQ   + +T   A    Y  P+ LSA A+D +S +L
Sbjct:   11 VKDYEILGPLGHGAYSRVYKVKHRASNNEFALKIIEKNKLT-----------VSKLNRRLKNEITLQSSLNHPCIVKLYNTFEDEDLIYLVLELCAGGELYTQIKEEGRLQEEEAKIMCSHIVEGLIYLHSNGILHRDLKLGNLLLSEDRTLVKIADFGLAVKLKNSSEERNTLCGTPNYISPEIINRQPYGLASDMWSLGCIIFACLTGSPPFQSTSIKDTFLKANDLKYSLPKHLSAEARDLISKLL 248          
BLAST of mRNA_H-elongata_contig77108.15384.1 vs. uniprot
Match: F4NXU6_BATDJ (Protein kinase domain-containing protein (Fragment) n=1 Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) TaxID=684364 RepID=F4NXU6_BATDJ)

HSP 1 Score: 203 bits (516), Expect = 4.520e-60
Identity = 111/254 (43.70%), Postives = 157/254 (61.81%), Query Frame = 1
Query:  313 DFDVGQELGRGGFAVVYRARVRASG---REVALKVVDKTRACEHLSGTSMGDGVALACARVANEVRLHWGLKHPTVVEMLDFFEDDRFVYLVLELCGGGDLYRRLRKGGP--LGERDAAGYMGQLLAGLAYLHERGVMHRDLKLSNLLLTEDGRRLRIADFGLAAKLENDDRERDTICGTPNYMAPE-VQGPGYGLSADMWSAGCLFYTMVTGVAPFQGRRVGETLANARAGHYMEPEGLSASAKDFLSSMLSL 1056
            D+++ + LGRGGF VV+RA  R  G   +E+A+K++DK        G     G+     RVANEV +HW L HP+++E+ ++FED + VYL++E C  G+L+  + K     L E +A G + QL+ GL Y+H   ++HRDLKLSNLLLT     L++ADFGLA +L+N D E+ T+CGTPNY++PE V    YGL  D+WS GC+  T++TG  PFQ   V  TL  A    Y  P  +S  A+D +  +L L
Sbjct:    1 DYELHEVLGRGGFGVVHRAISRCKGSFGQEIAIKMIDK--------GLMKAAGMT---RRVANEVEIHWQLHHPSILELYNYFEDAKCVYLIMEFCKNGELFAYIHKRPHFVLSEPEARGILMQLVRGLQYMHSNNILHRDLKLSNLLLTHTFD-LKLADFGLATRLDNRDGEQKTMCGTPNYISPEIVSRHSYGLETDLWSFGCMIVTILTGAPPFQSGAVKSTLDKASRLEYSLPNSISFEARDLIDKLLQL 242          
BLAST of mRNA_H-elongata_contig77108.15384.1 vs. uniprot
Match: A0A1R2BV98_9CILI (Aurora kinase n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BV98_9CILI)

HSP 1 Score: 209 bits (533), Expect = 6.190e-60
Identity = 106/249 (42.57%), Postives = 155/249 (62.25%), Query Frame = 1
Query:  307 IDDFDVGQELGRGGFAVVYRARVRASGREVALKVVDKTRACEHLSGTSMGDGVALACARVANEVRLHWGLKHPTVVEMLDFFEDDRFVYLVLELCGGGDLYRRLRKGGPLGERDAAGYMGQLLAGLAYLHERGVMHRDLKLSNLLLTEDGRRLRIADFGLAAKLENDDRERDTICGTPNYMAPEV-QGPGYGLSADMWSAGCLFYTMVTGVAPFQGRRVGETLANARAGHYMEPEGLSASAKDFLSSML 1050
            I D+++   LG G ++ VY+ + R+S  E ALK+++K +             V+    R+ NE+ L   L HP +V++ + FED+ F+YLVLELC GG+LY ++++ G L E DA      ++ GL YLH  G++HRDLKL NLLL+ED   ++IADFGLA KLEN   ER+T+CGTPNY++PE+     YGL++DMWS GC+ +  + G  PFQ   + +T   A    Y  P+  SA A+D +S +L
Sbjct:   11 IKDYEILGPLGHGAYSRVYKVKHRSSKNEFALKIIEKNKLT-----------VSKLNRRLKNEITLQSSLNHPCIVKLFNTFEDNDFIYLVLELCAGGELYTQIKEVGKLQEEDAKIMCSHIVEGLIYLHSNGILHRDLKLGNLLLSEDRTLVKIADFGLAVKLENSTEERNTLCGTPNYISPEIINRQPYGLASDMWSLGCIIFACLNGSLPFQSTSIKDTYLKANDLKYSLPKQFSAEARDLISKLL 248          
BLAST of mRNA_H-elongata_contig77108.15384.1 vs. uniprot
Match: A0A1Y1Z227_9FUNG (Pkinase-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z227_9FUNG)

HSP 1 Score: 207 bits (527), Expect = 7.310e-60
Identity = 108/255 (42.35%), Postives = 162/255 (63.53%), Query Frame = 1
Query:  307 IDDFDVGQELGRGGFAVVYRARVRAS---GREVALKVVDKTRACEHLSGTSMGDGVALACARVANEVRLHWGLKHPTVVEMLDFFEDDRFVYLVLELCGGGDLYRRLR-KGGPLGERDAAGYMGQLLAGLAYLHERGVMHRDLKLSNLLLTEDGRRLRIADFGLAAKLENDDRERDTICGTPNYMAPEV-QGPGYGLSADMWSAGCLFYTMVTGVAPFQGRRVGETLANARAGHYMEPEGLSASAKDFLSSMLSL 1056
            + DF++G+ LG G F  VY+A  +A    GR VA+K+++K++  E L              RV NEV + W L+HP+++E+ D+ ED+  VYLV+E+C GG+LYR L+ +  PL E +A   M QL+ GL Y+H  G+MHRDLKLSN+LLT++   ++I DFGLA K+   + E+ T+CGTPNY++PE+     YG ++D+WS GC+ +T + G  PF+ ++V  TL     G Y  P GLS  A+D +  +L +
Sbjct:   28 VKDFEIGRLLGTGAFGHVYKAVGKAGPYEGRVVAIKMINKSKLTEDLR------------RRVVNEVEIQWQLQHPSILELYDYSEDEDTVYLVMEICTGGELYRYLKERKRPLTESEARCVMRQLVDGLLYMHSNGIMHRDLKLSNILLTDEYH-IKIGDFGLATKVNGREGEQKTMCGTPNYISPEIISRQPYGFASDIWSLGCILFTFLAGKPPFESQKVRSTLDKVTRGDYTLPTGLSTEAQDLIRRLLQI 269          
BLAST of mRNA_H-elongata_contig77108.15384.1 vs. uniprot
Match: A0A7R8XAL7_9CRUS (Serine/threonine-protein kinase PLK4 n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8XAL7_9CRUS)

HSP 1 Score: 213 bits (541), Expect = 1.050e-59
Identity = 111/250 (44.40%), Postives = 158/250 (63.20%), Query Frame = 1
Query:  307 IDDFDVGQELGRGGFAVVYRARVRASGREVALKVVDKTRACEHLSGTSMGDGVALACARVANEVRLHWGLKHPTVVEMLDFFEDDRFVYLVLELCGGGDLYRRLRKGGP-LGERDAAGYMGQLLAGLAYLHERGVMHRDLKLSNLLLTEDGRRLRIADFGLAAKLENDDRERDTICGTPNYMAPEVQG-PGYGLSADMWSAGCLFYTMVTGVAPFQGRRVGETLANARAGHYMEPEGLSASAKDFLSSML 1050
            I+D++V   LGRGGFA VY  + +ASG EVA+K++DK    + +S + M         RV  EV +H+ LKHP++VE+  FFED+ +VYL+LELC  G+  + L+  G  L E  AA Y+ Q++ GL YL +  ++HRDL L+N+LLT+D    +I DFGLA +L   D    T+CGTPN+++PEV     +GL  D+WS GC+ YTM+ G  PF  + +  TL     GHY  P+GL+  AKD +S +L
Sbjct:    8 IEDYEVHNLLGRGGFACVYHGKCKASGDEVAIKMIDK----KAMSSSGM-------IKRVQQEVSIHYRLKHPSIVELYTFFEDENYVYLILELCHNGEFQKYLKNHGKQLSEAQAAHYLRQIVKGLLYLQQHKILHRDLTLANILLTKD-MDAKIGDFGLATQLNRPDERHLTMCGTPNFISPEVATRSSHGLETDVWSVGCMLYTMLVGKPPFDSQAIRSTLTKVVMGHYEIPDGLTIEAKDIISGLL 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77108.15384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ88_ECTSI1.720e-12672.16Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5L179_9PHAE6.470e-12570.23Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A4P9W4A5_9FUNG2.690e-6948.81Kinase-like domain-containing protein (Fragment) n... [more]
M4SZK9_9BILA1.030e-6043.58Polo-like kinase 4 (Fragment) n=2 Tax=Brachionus T... [more]
A0A4P9XBI6_9FUNG1.250e-6044.14Aurora kinase (Fragment) n=1 Tax=Caulochytrium pro... [more]
A0A1R2CUB6_9CILI4.410e-6042.17Aurora kinase n=1 Tax=Stentor coeruleus TaxID=5963... [more]
F4NXU6_BATDJ4.520e-6043.70Protein kinase domain-containing protein (Fragment... [more]
A0A1R2BV98_9CILI6.190e-6042.57Aurora kinase n=1 Tax=Stentor coeruleus TaxID=5963... [more]
A0A1Y1Z227_9FUNG7.310e-6042.35Pkinase-domain-containing protein n=1 Tax=Basidiob... [more]
A0A7R8XAL7_9CRUS1.050e-5944.40Serine/threonine-protein kinase PLK4 n=1 Tax=Darwi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77108contigH-elongata_contig77108:348..2564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score409.1
Seed ortholog evalue1.6e-111
Seed eggNOG ortholog2880.D7FZ88
KEGG koko:K06660,ko:K08863
KEGG Pathwayko04068,ko04111,ko04113,map04068,map04111,map04113
EggNOG free text desc.regulation of centriole replication
EggNOG OGsKOG0575@1,KOG0575@2759
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-06_008930.1
EC2.7.11.21
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size1056
Cds size804
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77108.15384.1prot_H-elongata_contig77108.15384.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77108 600..2564 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.6245558-UTR-H-elongata_contig77108:347..5991622931175.6245558-UTR-H-elongata_contig77108:347..599Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77108 348..599 +
1691679729.2441623-UTR-H-elongata_contig77108:347..5991691679729.2441623-UTR-H-elongata_contig77108:347..599Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77108 348..599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.659852-CDS-H-elongata_contig77108:599..11471622931175.659852-CDS-H-elongata_contig77108:599..1147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77108 600..1147 +
1691679729.2711215-CDS-H-elongata_contig77108:599..11471691679729.2711215-CDS-H-elongata_contig77108:599..1147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77108 600..1147 +
1622931175.6918392-CDS-H-elongata_contig77108:2308..25641622931175.6918392-CDS-H-elongata_contig77108:2308..2564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77108 2309..2564 +
1691679729.284055-CDS-H-elongata_contig77108:2308..25641691679729.284055-CDS-H-elongata_contig77108:2308..2564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77108 2309..2564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77108.15384.1

>prot_H-elongata_contig77108.15384.1 ID=prot_H-elongata_contig77108.15384.1|Name=mRNA_H-elongata_contig77108.15384.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=268bp
MPTREGVSGKPSLPPPPCIDDFDVGQELGRGGFAVVYRARVRASGREVAL
KVVDKTRACEHLSGTSMGDGVALACARVANEVRLHWGLKHPTVVEMLDFF
EDDRFVYLVLELCGGGDLYRRLRKGGPLGERDAAGYMGQLLAGLAYLHER
GVMHRDLKLSNLLLTEDGRRLRIADFGLAAKLENDDRERDTICGTPNYMA
PEVQGPGYGLSADMWSAGCLFYTMVTGVAPFQGRRVGETLANARAGHYME
PEGLSASAKDFLSSMLSL
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mRNA from alignment at H-elongata_contig77108:348..2564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77108.15384.1 ID=mRNA_H-elongata_contig77108.15384.1|Name=mRNA_H-elongata_contig77108.15384.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2217bp|location=Sequence derived from alignment at H-elongata_contig77108:348..2564+ (Himanthalia elongata Himel1 dioecious)
AACTACACCAAAACTGCAGTTCCAAGCGGCACTGGGTATATGGCCCAAGG CCCAAGGTGCTGTCCCGAATGTGGAGGCGACCCGTACCTCCTCGCCGATA GCCAGTCGGCGTGCCTCTTGGCAGGCGTTTAAGGCGGGCAGCATTTTCAT TTCAGGCGGGAAAGGAACTTTCTTAGCCCTTGGAGGTGATAACAGTCCGT ACCATTTTACTCCTCTGGACCTAGACACGGTAATCCGCACAGACTTTGCT TGATGCCAACGCGTGAGGGGGTATCTGGGAAGCCGTCGCTTCCTCCGCCA CCTTGTATCGATGACTTCGACGTGGGGCAGGAGTTGGGCAGAGGCGGCTT CGCGGTCGTGTATCGAGCCCGGGTACGTGCGTCGGGGCGTGAGGTAGCCC TCAAGGTAGTTGACAAAACTCGAGCCTGTGAGCACCTGAGCGGTACGAGC ATGGGCGACGGCGTGGCGCTGGCCTGCGCAAGGGTGGCGAACGAGGTTCG TTTGCACTGGGGCTTAAAGCACCCTACAGTAGTCGAGATGCTTGACTTCT TCGAGGACGACAGATTTGTGTATCTCGTGCTGGAGCTTTGCGGAGGTGGC GACTTGTACAGGAGACTGCGAAAGGGAGGCCCGCTTGGAGAGCGCGACGC GGCGGGGTACATGGGCCAGCTGCTGGCAGGGCTTGCGTACCTTCACGAGA GGGGCGTGATGCACCGGGACCTGAAGCTCTCGAATCTTTTGCTGACTGAA GACGGCCGTCGCCTGAGGATAGCGGACTTTGGTCTAGCCGCCAAGCTCGA GTGAGTCTCTCTAACAGGAGAAACCAGGTGTCAAACTCAACGAATCATGT GCTTCGAGTGTTTCGGCCCCGATACCTTGGGGATTGGGTCGTATTCCTTG TAACCTAACGCAGGTCACGGAATATTTTCCATGGTGTTGTGGAACAAGTG GCGTCTGTCGTTGGTGCAGCGCTATGAGCCGCTGCGAGCTAGGCTTTCTT CCCGTCTGTCGGTGATCGTTCCTCGTTTGTTACTTTCGTCTGTAGACTTG GTTGATTGTGCAGAAACCTCCATGTACTATTAATACAGCACCCTGATGCA GGAGGTTTGCACATTGCGAAGTCCACGCGTTCCCCCAAGTTATGACACAA AGCCACCCCTTGCTCTCAGGGTGCCTCTTAACTTATATTTTCTATCATCT CTCTCTACCTCTCTGTCTCTCTGCATGTTCCGTCGGCATTCGCTGACCTC CCAATACTCGAGCTTTGATGTTTTTCTATGTAGCCAATCGAGCTTCTTCA TTAAAAAGATTGAGTACATACTCTCCACCTTGACCACGAATTGTTTGTAC AAAAGTATAAAGCTGGCTCTCACGCTTGATTTGCTACAAGTTATCCTGCT GTGGAACCTCGAGACCGACTCGCCGTGGCCTGGGACATCATCGACTGCTT TGCGTTGGCGATGGGAGCAAAACCCCGACGAATAACACTGCTGTAGACAT AGCTACTAAAGAGATAGGCTGTAAGCTATTATAGTAATCTCGAGTAATGT AGTGTCTTGCTTCCCGTACGATGCGCCTCCGCTCTCCAGGATGACTAATG CCATCGGAGAAAAGGTAACCTAGGGACGGTCGAGCTTCATCTAAAGCGCT GCGTGACGCCAAAGCCCGTGACCCCAGATCAACGCCACCGCATACTCCTC AAGTCCCTATATTTTCAACTAGAGTTGCTGCCGCGAATGCCCACCTCAAT TTTTCCCTTGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCATCAACACCNNNNNN NNNNCCGCGAATCCCCCCCCCAATTTTTCCCTTCCCCCCCCCCCCCCCCC ACCACCCTACACATACACGTCCTCCCGCCACCGTGCGAACGAACGCGTTC TTGTCACATAGAAACGACGACCGGGAGAGAGACACGATCTGTGGCACCCC CAACTACATGGCCCCGGAGGTGCAAGGGCCAGGGTACGGACTGTCAGCAG ACATGTGGTCGGCCGGATGCCTTTTCTATACTATGGTGACAGGGGTCGCG CCCTTCCAGGGACGCAGAGTGGGGGAAACGCTGGCGAACGCTAGAGCAGG CCATTACATGGAGCCGGAGGGCTTGTCGGCGTCGGCGAAGGACTTCTTGT CTTCCATGCTGAGCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig77108:348..2564+

>mRNA_H-elongata_contig77108.15384.1 ID=mRNA_H-elongata_contig77108.15384.1|Name=mRNA_H-elongata_contig77108.15384.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1608bp|location=Sequence derived from alignment at H-elongata_contig77108:348..2564+ (Himanthalia elongata Himel1 dioecious)
ATGCCAACGCGTGAGGGGGTATCTGGGAAGCCGTCGCTTCCTCCGCCACC
TTGTATCGATGACTTCGACGTGGGGCAGGAGTTGGGCAGAGGCGGCTTCG
CGGTCGTGTATCGAGCCCGGGTACGTGCGTCGGGGCGTGAGGTAGCCCTC
AAGGTAGTTGACAAAACTCGAGCCTGTGAGCACCTGAGCGGTACGAGCAT
GGGCGACGGCGTGGCGCTGGCCTGCGCAAGGGTGGCGAACGAGGTTCGTT
TGCACTGGGGCTTAAAGCACCCTACAGTAGTCGAGATGCTTGACTTCTTC
GAGGACGACAGATTTGTGTATCTCGTGCTGGAGCTTTGCGGAGGTGGCGA
CTTGTACAGGAGACTGCGAAAGGGAGGCCCGCTTGGAGAGCGCGACGCGG
CGGGGTACATGGGCCAGCTGCTGGCAGGGCTTGCGTACCTTCACGAGAGG
GGCGTGATGCACCGGGACCTGAAGCTCTCGAATCTTTTGCTGACTGAAGA
CGGCCGTCGCCTGAGGATAGCGGACTTTGGTCTAGCCGCCAAGCTCGAAT
GCCAACGCGTGAGGGGGTATCTGGGAAGCCGTCGCTTCCTCCGCCACCTT
GTATCGATGACTTCGACGTGGGGCAGGAGTTGGGCAGAGGCGGCTTCGCG
GTCGTGTATCGAGCCCGGGTACGTGCGTCGGGGCGTGAGGTAGCCCTCAA
GGTAGTTGACAAAACTCGAGCCTGTGAGCACCTGAGCGGTACGAGCATGG
GCGACGGCGTGGCGCTGGCCTGCGCAAGGGTGGCGAACGAGGTTCGTTTG
CACTGGGGCTTAAAGCACCCTACAGTAGTCGAGATGCTTGACTTCTTCGA
GGACGACAGATTTGTGTATCTCGTGCTGGAGCTTTGCGGAGGTGGCGACT
TGTACAGGAGACTGCGAAAGGGAGGCCCGCTTGGAGAGCGCGACGCGGCG
GGGTACATGGGCCAGCTGCTGGCAGGGCTTGCGTACCTTCACGAGAGGGG
CGTGATGCACCGGGACCTGAAGCTCTCGAATCTTTTGCTGACTGAAGACG
GCCGTCGCCTGAGGATAGCGGACTTTGGTCTAGCCGCCAAGCTCGAAAAC
GACGACCGGGAGAGAGACACGATCTGTGGCACCCCCAACTACATGGCCCC
GGAGGTGCAAGGGCCAGGGTACGGACTGTCAGCAGACATGTGGTCGGCCG
GATGCCTTTTCTATACTATGGTGACAGGGGTCGCGCCCTTCCAGGGACGC
AGAGTGGGGGAAACGCTGGCGAACGCTAGAGCAGGCCATTACATGGAGCC
GGAGGGCTTGTCGGCGTCGGCGAAGGACTTCTTGTCTTCCATGCTGAGCT
TGAAACGACGACCGGGAGAGAGACACGATCTGTGGCACCCCCAACTACAT
GGCCCCGGAGGTGCAAGGGCCAGGGTACGGACTGTCAGCAGACATGTGGT
CGGCCGGATGCCTTTTCTATACTATGGTGACAGGGGTCGCGCCCTTCCAG
GGACGCAGAGTGGGGGAAACGCTGGCGAACGCTAGAGCAGGCCATTACAT
GGAGCCGGAGGGCTTGTCGGCGTCGGCGAAGGACTTCTTGTCTTCCATGC
TGAGCTTG
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