mRNA_H-elongata_contig76892.15359.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76892.15359.1
Unique NamemRNA_H-elongata_contig76892.15359.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76892.15359.1 vs. uniprot
Match: D7FSJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ4_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 1.340e-93
Identity = 172/273 (63.00%), Postives = 201/273 (73.63%), Query Frame = 1
Query:    1 WSIYILGPTGVRQKVAFPFCLINSPETS-LSGVSPGINHLRPGWVLAESMYTIIRNEEKYRRRASAR-----RNRVDWPIFRPSTIKLMADARARLVAAGAEKVDTYIGDRDVAGLGKNYMTEASRLEGIAAYTLHLRRYALRGLLLRLEASEPSADLGLSSLSGPSGSTGGSRDDKCQGGVGRMPPPESNALETARLLTLGESWPPCLGAADGSGNGEGEEWDLQRSFLAAEYGAWETSAKSLLEELIAIEAEVAKAVETSKAKDDRRGSQV 801
            +S+   G T + Q+VAFPFCLINS E + L GVSPG+NHLRPGWVL+ESMY +IR+E+KYRRRA AR     RNRVDWP+FRPS ++LMADARARLVAAG  K + Y+GDR VAGLGKNYMTEASRLEGIA YTLHLRRYALRGLL RLE  +   D  L  L GP+  T G+ D    GGV RMPPP  NALETARLLTL +        +   G+  G  W+LQ+S L +E+G  E     L+++LIAIEAEVAKAVE SKAKDD+RGSQV
Sbjct:  344 FSVIGSGVTCLPQRVAFPFCLINSQEQAGLPGVSPGLNHLRPGWVLSESMYMVIRSEDKYRRRAKARQEHSRRNRVDWPVFRPSMMRLMADARARLVAAGLNKREVYVGDRGVAGLGKNYMTEASRLEGIATYTLHLRRYALRGLLSRLE-EQSGTDRFL--LQGPAKPTWGNGDGNDGGGVCRMPPPVGNALETARLLTLEQQQQQQXXWSSVGGDDGG--WELQKSLLVSEFGEEERGFIDLMQKLIAIEAEVAKAVEISKAKDDKRGSQV 611          
BLAST of mRNA_H-elongata_contig76892.15359.1 vs. uniprot
Match: A0A6H5K4J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J9_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 6.390e-51
Identity = 93/134 (69.40%), Postives = 108/134 (80.60%), Query Frame = 1
Query:    1 WSIYILGPTGVRQKVAFPFCLINSPETS-LSGVSPGINHLRPGWVLAESMYTIIRNEEKYRRRASARRNRVDWPIFRPSTIKLMADARARLVAAGAEKVDTYIGDRDVAGLGKNYMTEASRLEGIAAYTLHLRR 399
            +S+   G T + Q+VAFPFCLINS E + L GVSPG+NHLRPGWVL+ESMY +IR+E+K        RNRVDWP+FRPS ++LMADARARLVAAG  K + Y+GDR VAGLGKNYMTEASRLEGIA YTLHLRR
Sbjct:  497 FSVIGSGVTCLPQRVAFPFCLINSQEEAGLPGVSPGLNHLRPGWVLSESMYMVIRSEDK--------RNRVDWPVFRPSMMRLMADARARLVAAGLNKTEIYVGDRGVAGLGKNYMTEASRLEGIATYTLHLRR 622          
BLAST of mRNA_H-elongata_contig76892.15359.1 vs. uniprot
Match: A0A835Z3E2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3E2_9STRA)

HSP 1 Score: 175 bits (443), Expect = 5.050e-47
Identity = 118/279 (42.29%), Postives = 153/279 (54.84%), Query Frame = 1
Query:    1 WSIYILGPTGVRQKVAFPFCLINSPETSLSGVSPGINHLRPGWVLAESMYTIIRNEEKYRRRASARRNRVDWPIFRPSTIKLMADARARLVAAG---AEKVDTYIGDRDVAGLGKNYMTEASRLEGIAAYTLHLRRYALRGLLLRLEASEPSADLGLSSLSGPSGSTGGSRDDKCQGGVGRMPPPESNALETARLLTLGESWPPCLGAADGS-----GNGEGEEWDLQRSFLAAEYGA----WETSAKSLLEELIAIEAEVAKAVETSKAKDDRRGSQV 801
            +S+   G T + Q+VA PF LI  P T+  G + G+N L P WVL +SMY+I+RN  KYR R+ A   RV W IFR ST++LM  AR      G     K   Y+GD  +AGLGKN MTEA R +G AAYT+H+RRYAL GLL  LE    +     ++ +G +G+   +     Q     +PPP +  L  +R L      PP  G A  S       GE +EWD QR+ L  E+GA    WE   K +L EL A  A V   V  SK +DD+RG+QV
Sbjct:  324 YSVVAAGATCLPQRVALPFSLIAPPLTAFPGAALGLNQLHPAWVLTQSMYSIVRNAAKYRSRSRALHTRVGWDIFRRSTVQLMVHARDAANGGGDTAVPKDHAYVGDAQMAGLGKNIMTEADRRKGEAAYTMHIRRYALTGLLRWLEGRIAAR---AAAAAGDAGANADAAAPPLQ-----LPPPTTMLLHVSRELPQ----PPPTGEAQLSTIFEQALGEEDEWDFQRAVLGYEFGAAMETWE-GIKGVLLELKAAAAAVXXXVAASKGRDDKRGAQV 589          
BLAST of mRNA_H-elongata_contig76892.15359.1 vs. uniprot
Match: A0A849ZQK4_9BACT (DUF4954 family protein n=1 Tax=Candidatus Sumerlaeia bacterium TaxID=2715255 RepID=A0A849ZQK4_9BACT)

HSP 1 Score: 146 bits (368), Expect = 1.940e-36
Identity = 96/267 (35.96%), Postives = 138/267 (51.69%), Query Frame = 1
Query:    1 WSIYILGPTGVRQKVAFPFCLINSPETSLSGVSPGINHLRPGWVLAESMYTIIRNEEKYRRRASARRNRVDWPIFRPSTIKLMADARARLVAAGAEKVDTYIGDRDVAGLGKNYMTEASRLEGIAAYTLHLRRYALRGLLLRLEASEPSADLGLSSLSGPSGSTGGSRDDKCQGGVGRMPPPESNALETARLLTLGESWPPCLGAADGSGNGEGEEWDLQRSFLAAEYGAWETSAKSLLEELIAIEAEVAKAVETSKAKDDRRGSQV 801
            +S+       + Q+V  PF LIN+P   + G+SP  N + PGWVL+++++ + RNE KY +R  A+R ++ + +FRP  I LM +AR RL AA  ++V T   D++V GLGKNYMTE +R  GI AYT +LR YAL GL  R  A++   DL                  + + G  R                                      W+ +R  L AE+   E   K LL EL++++  +AKAVETSKAKDD+RG++V
Sbjct:  389 YSLIATAVNALPQRVEMPFSLINTPAERIDGISPAYNEIMPGWVLSDNIFAVKRNEGKYAKRNKAKRAKIVFEVFRPEIIDLMIEARKRLQAATGKEVYT---DKEVKGLGKNYMTEVARKRGIEAYTFYLRYYALCGL--RAAAAKGKVDL------------------EAKSGDAR--------------------------------------WEHERQVLLAEFT--ERDVKRLLRELVSMQETIAKAVETSKAKDDQRGARV 592          
BLAST of mRNA_H-elongata_contig76892.15359.1 vs. uniprot
Match: A0A1V4RJQ2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Latescibacteria bacterium 4484_181 TaxID=1956174 RepID=A0A1V4RJQ2_9BACT)

HSP 1 Score: 140 bits (354), Expect = 3.750e-36
Identity = 69/144 (47.92%), Postives = 96/144 (66.67%), Query Frame = 1
Query:    1 WSIYILGPTGVRQKVAFPFCLINSPETSLSGVSPGINHLRPGWVLAESMYTIIRNEEKYRRRASARRNRVDWPIFRPSTIKLMADARARLVAAGAEKVDTYIGDRDVAGLGKNYMTEASRLEGIAAYTLHLRRYALRGLLLRLE 432
            +SI+ +G   + QK+ FPF LIN+P     GVSP  N +RP W+L ++MYT+ RNEEK+++R  A+R   D+ +FRP  + LM DAR RL+    E  D Y  D+D+ GLGKNYM E SRL+ I AYT +++ YAL GL  ++E
Sbjct:   96 YSIFAMGVNALAQKLTFPFSLINTPAAVYKGVSPAYNEIRPAWLLTDNMYTLRRNEEKFKKRNKAKRTTFDFDVFRPHIVDLMIDARNRLLEV-TEVKDLYT-DKDIRGLGKNYMLEESRLKAIEAYTFYIKYYALLGLKRKVE 237          
BLAST of mRNA_H-elongata_contig76892.15359.1 vs. uniprot
Match: A0A496SZ13_9BACT (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=A0A496SZ13_9BACT)

HSP 1 Score: 140 bits (354), Expect = 1.810e-34
Identity = 69/144 (47.92%), Postives = 96/144 (66.67%), Query Frame = 1
Query:    1 WSIYILGPTGVRQKVAFPFCLINSPETSLSGVSPGINHLRPGWVLAESMYTIIRNEEKYRRRASARRNRVDWPIFRPSTIKLMADARARLVAAGAEKVDTYIGDRDVAGLGKNYMTEASRLEGIAAYTLHLRRYALRGLLLRLE 432
            +SI+ +G   + QK+ FPF LIN+P     GVSP  N +RP W+L ++MYT+ RNEEK+++R  A+R   D+ +FRP  + LM DAR RL+    E  D Y  D+D+ GLGKNYM E SRL+ I AYT +++ YAL GL  ++E
Sbjct:  390 YSIFAMGVNALAQKLTFPFSLINTPAAVYKGVSPAYNEIRPAWLLTDNMYTLRRNEEKFKKRNKAKRTTFDFDVFRPHIVDLMIDARNRLLEV-TEVKDLYT-DKDIRGLGKNYMLEESRLKAIEAYTFYIKYYALLGLKRKVE 531          
BLAST of mRNA_H-elongata_contig76892.15359.1 vs. uniprot
Match: A0A0S8J094_9BACT (Uncharacterized protein n=2 Tax=unclassified Planctomycetes TaxID=473814 RepID=A0A0S8J094_9BACT)

HSP 1 Score: 138 bits (348), Expect = 1.180e-33
Identity = 73/150 (48.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query:    1 WSIYILGPTGVRQKVAFPFCLINSPETSLSGVSPGINHLRPGWVLAESMYTIIRNEEKYRRRASARRNRVDWPIFRPSTIKLMADARARLVAAGAEKVDTYIGDRDVAGLGKNYMTEASRLEGIAAYTLHLRRYALRGLLLRLEASEPSA 450
            ++I   G   + QKV FPF LIN+P  S  G+SP  N + PGWVL+++++TI RNE KY+ R  ARR    + +FRP T+ LM D R RL    AE  + Y  DRD++GLGKNYM E SR++ I  YT ++R YAL GL  R+E S  SA
Sbjct:  385 YAIIASGVATLPQKVTFPFSLINAPAQSYPGISPAYNEIMPGWVLSDNIFTIRRNEGKYKDRNKARRTEFIFDVFRPDTVDLMLDGRKRLSDV-AEPQELYT-DRDISGLGKNYMLEHSRVKAIETYTFYIRYYALLGLKSRIETSSKSA 532          
BLAST of mRNA_H-elongata_contig76892.15359.1 vs. uniprot
Match: A0A836RJL8_9PLAN (DUF4954 family protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RJL8_9PLAN)

HSP 1 Score: 132 bits (333), Expect = 5.380e-32
Identity = 69/145 (47.59%), Postives = 91/145 (62.76%), Query Frame = 1
Query:    1 WSIYILGPTGVRQKVAFPFCLINSPETSLSGVSPGINHLRPGWVLAESMYTIIRNEEKYRRRASARRNRVDWPIFRPSTIKLMADARARLVAAGAEKVDTYIGDRDVAGLGKNYMTEASRLEGIAAYTLHLRRYALRGLLLRLEA 435
            +SI   G T + Q+V FPF LINSP   + G+SP  N + PGWVL+ ++YT+ RNE KY  R  ARR + ++ +FRP T+ LM DA  RL A   ++      DRD+ GLGKNYM EA R   I AY  ++R YAL  L+ R+EA
Sbjct:  261 YSILASGVTTLPQRVTFPFSLINSPAEVIEGISPAYNEIIPGWVLSNNIYTLKRNEGKYAARNKARRTKFNFSVFRPDTVALMRDACRRLEAV--QETKPVYTDRDIPGLGKNYMREAVRQPAIEAYRFYIRYYALMALMNRVEA 403          
BLAST of mRNA_H-elongata_contig76892.15359.1 vs. uniprot
Match: H3H1Y3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1Y3_PHYRM)

HSP 1 Score: 130 bits (327), Expect = 1.080e-31
Identity = 71/158 (44.94%), Postives = 99/158 (62.66%), Query Frame = 1
Query:    1 WSIYILGPTGVRQKVAFPFCLINSPETSLSGVSPGINHLRPGWVLAESMYTIIRNEEKYRRRASARRNRVDWPIFRPSTIKLMADARARLVAA-GAEKV------DTYIGDRDVAGLGKNYMTEASRLEGIAAYTLHLRRYALRGLLLRLEASEPSAD 453
            +S+       + Q VA PF LIN+P   +S +SP IN + PGWVL+ S++T++RNE+K+R R  ++R +++  IFRP  ++ M DAR  L AA G  K+      D Y  D+ V GLGKNYM E+SR  GIAAYT  ++ YAL  LL  +E+   SAD
Sbjct:  176 YSVIATAVNTLPQLVAMPFALINTPGHIISSLSPAINEISPGWVLSSSVFTVLRNEDKFRSRNKSKRTQIEAEIFRPEIVQYMKDARTELAAAEGNAKMSLANGEDVYT-DKQVRGLGKNYMRESSRRAGIAAYTFFIQLYALDALLPLVESGRVSAD 332          
BLAST of mRNA_H-elongata_contig76892.15359.1 vs. uniprot
Match: A0A6A3F5H9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3F5H9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.350e-31
Identity = 69/157 (43.95%), Postives = 99/157 (63.06%), Query Frame = 1
Query:    1 WSIYILGPTGVRQKVAFPFCLINSPETSLSGVSPGINHLRPGWVLAESMYTIIRNEEKYRRRASARRNRVDWPIFRPSTIKLMADARARLVAA-GAEKVDTYIG-----DRDVAGLGKNYMTEASRLEGIAAYTLHLRRYALRGLLLRLEASEPSAD 453
            +S+       + Q VA PF LIN+P   ++ +SP IN + PGWVL+ S++T++RNE+K+R R  ++R  ++  IFRP  ++ M DAR+ L AA G  K+    G     D+ V GLGKNYM E+SR  GIAAYT  ++ YA+  LLL +E+   SAD
Sbjct:  385 YSVIATAVNTLPQLVAMPFALINTPAHVIASLSPAINEISPGWVLSSSVFTVLRNEDKFRSRNKSKRTHIEAAIFRPEIVQYMKDARSELAAAEGKAKISLPNGEAVYTDKQVRGLGKNYMRESSRQAGIAAYTFFIKLYAVEALLLLVESGRISAD 541          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76892.15359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSJ4_ECTSI1.340e-9363.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4J9_9PHAE6.390e-5169.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z3E2_9STRA5.050e-4742.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A849ZQK4_9BACT1.940e-3635.96DUF4954 family protein n=1 Tax=Candidatus Sumerlae... [more]
A0A1V4RJQ2_9BACT3.750e-3647.92Uncharacterized protein n=1 Tax=Candidatus Latesci... [more]
A0A496SZ13_9BACT1.810e-3447.92Uncharacterized protein n=3 Tax=Bacteria TaxID=2 R... [more]
A0A0S8J094_9BACT1.180e-3348.67Uncharacterized protein n=2 Tax=unclassified Planc... [more]
A0A836RJL8_9PLAN5.380e-3247.59DUF4954 family protein n=1 Tax=Planctomycetaceae b... [more]
H3H1Y3_PHYRM1.080e-3144.94Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3F5H9_9STRA1.350e-3143.95Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76892contigH-elongata_contig76892:188..2504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.2
Seed ortholog evalue4.8e-79
Seed eggNOG ortholog2880.D7FSJ4
EggNOG OGs29314@1,2R9XZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size801
Cds size801
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76892.15359.1prot_H-elongata_contig76892.15359.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76892 188..2504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.2728748-CDS-H-elongata_contig76892:187..2561622931173.2728748-CDS-H-elongata_contig76892:187..256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76892 188..256 -
1691679728.242946-CDS-H-elongata_contig76892:187..2561691679728.242946-CDS-H-elongata_contig76892:187..256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76892 188..256 -
1622931173.2935183-CDS-H-elongata_contig76892:791..11251622931173.2935183-CDS-H-elongata_contig76892:791..1125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76892 792..1125 -
1691679728.2534714-CDS-H-elongata_contig76892:791..11251691679728.2534714-CDS-H-elongata_contig76892:791..1125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76892 792..1125 -
1622931173.3103588-CDS-H-elongata_contig76892:1490..16911622931173.3103588-CDS-H-elongata_contig76892:1490..1691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76892 1491..1691 -
1691679728.2700503-CDS-H-elongata_contig76892:1490..16911691679728.2700503-CDS-H-elongata_contig76892:1490..1691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76892 1491..1691 -
1622931173.3243306-CDS-H-elongata_contig76892:2307..25041622931173.3243306-CDS-H-elongata_contig76892:2307..2504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76892 2308..2504 -
1691679728.2825108-CDS-H-elongata_contig76892:2307..25041691679728.2825108-CDS-H-elongata_contig76892:2307..2504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76892 2308..2504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76892.15359.1

>prot_H-elongata_contig76892.15359.1 ID=prot_H-elongata_contig76892.15359.1|Name=mRNA_H-elongata_contig76892.15359.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp
WSIYILGPTGVRQKVAFPFCLINSPETSLSGVSPGINHLRPGWVLAESMY
TIIRNEEKYRRRASARRNRVDWPIFRPSTIKLMADARARLVAAGAEKVDT
YIGDRDVAGLGKNYMTEASRLEGIAAYTLHLRRYALRGLLLRLEASEPSA
DLGLSSLSGPSGSTGGSRDDKCQGGVGRMPPPESNALETARLLTLGESWP
PCLGAADGSGNGEGEEWDLQRSFLAAEYGAWETSAKSLLEELIAIEAEVA
KAVETSKAKDDRRGSQV
back to top

mRNA from alignment at H-elongata_contig76892:188..2504-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76892.15359.1 ID=mRNA_H-elongata_contig76892.15359.1|Name=mRNA_H-elongata_contig76892.15359.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2317bp|location=Sequence derived from alignment at H-elongata_contig76892:188..2504- (Himanthalia elongata Himel1 dioecious)
TGGTCCATATATATCCTGGGACCAACCGGTGTTCGACAAAAGGTGGCGTT CCCATTCTGTCTGATCAACAGCCCGGAGACGTCACTTTCGGGGGTATCTC CCGGGATAAACCATCTGAGGCCTGGCTGGGTGCTGGCGGAGTCGATGTAT ACGATCATCCGCAACGAGGAGAAGTACCGAAGGCGTGCCAGCGCGAGGTC AGTGAGCTTCCTCCTTTTTCTGCGGCTCCCTTCGACATTCAGCATGCGGC ACAGCCTTAAGTAATCGCTCCCTCCGATCAACACCACCAAGCGTGCTCAT GAGTGTAAATAAATACTCTCGAGGCATTGTCATGGTCGGACGGCATCATA GAGAGCTGATTTGTGTCAAGTCGCTCGCTTTACGCGGCGTTTTTGTTTCT GTTTCTCTGTGTGGGCACACCATACAGACCATGCACACCCCCAAAAACCG TGTACACTCTCTCTGTGTGGACATACCACACACACACCCTCCGTATGCAA TACTCCATTTTGCTATTTTTTTTAATATATTAGGATCGATGTTCTCAAAT ATCTTGTTATTTTTAAGTAGTGTTGATATTGTTTTTGATCGTAACATTGA TGGTGGTTATTCAGTGCTAGAAGAGCTTTTGTGAAGCAATCCTTACCCCT GAGCTCCATTTATTTCAATCAATATTACCTCTTCCCATACGTTTTATTAT TCAGTCAAATGTTTTGCGAAGCGAACATCACACCCCACCCACTCCATTTT TATTTTTATTTTTATTTTTATGGTGCTTTATATCCTGGTGACCTCCTCGT GGTGACTTGCCAGACGCAACCGCGTGGACTGGCCCATCTTTCGGCCGTCC ACGATAAAGCTAATGGCCGACGCGCGCGCTAGGCTGGTGGCGGCCGGCGC GGAGAAGGTTGATACCTACATCGGAGATCGCGACGTTGCGGGCTTGGGCA AGAACTACATGACGGAGGCCTCCAGGCTCGAGGGCATCGCGGCGTACACC TTGCACCTCCGCAGGTAGATGGGGGTGGATGGGACATGTAGATGGGGTTT ACCGATCTTCAACTTTTGATGGTAGTGTGGTGTGGTGTGGTGTGGTGTGG TGTGGTGTCCTCTCTATCGATTTTCCTCGAGCCGAGCCTCGCGCCAAGTT CCAAGTTGGCGTGACTGCCCCAGCGGAAACAAGCCTCTTTCAAGCAATCT ATCAAGTACTATCATATACAGTATATATATATATATATATATATGTATAA TGATTAATCATCATGATCATCACCATCAATTTCATCATAAATCCGCTGAT TGTTTGTTTTTGCGAAATACACTATTCAAACAAAAAACGAAGTTATTTAA CTAACTCAATTACTAACTTCGAAGAATAGGTACGCCCTCCGAGGCCTGCT CTTGCGTCTAGAAGCCTCGGAGCCCTCCGCGGACCTCGGCCTGTCCTCCC TGTCCGGCCCCTCCGGCTCCACGGGCGGTTCTCGCGACGATAAATGTCAA GGAGGGGTCGGACGAATGCCTCCCCCCGAAAGCAACGCCCTCGAGACGGC GCGCCTGCTGACTCTCGGGGAGTCGTGGCCGCCGTGCCTTGGTGCAGCCG ACGGTAGCGGCAACGGGGAAGGAGAAGAATGGGATTTGCAAAGGAGCTTT CTGGCGGCGGAGTACGGGGCCTGGGAGACGAGCGCGAAGAGCCTCTTGGA GGAGCTTATCGCGGTGAGGTGCTTTCGGTGTGATTTGAATGGGGTTGTTT GTCCTGTCTTATCCCTCGTGGCTGAAACCGTGGATTTATCAACAGCGTAA AACCTTGCCCTTTCTGAGAACAATTTTTGGAAATCCTTCTCTACACTTTT TTCGTCAAAACAAAAAAACAATATCAAAATTACAGCTTTTAAAAAAGAAT TGAGCGGCCGGCCGGCGTGGGAAAGATCTCGCCCAGACCTCTAGAAAATG TTGTACTTTTTCGAGAGCCAGGGCCCTCTTTATGTGCATTGCAGCAAAGA AACAAACGAAGCAGGGTAAAGGGTTTTCCAACGGCCGGGGTGGCGTTTTC CAGAGGGTTTCATTTTTTCTACCTTGTGACCACGTGCTGGATTTTTTTAC ATCAGCTTATTATGTGAGAATTCAATCAAATTAAAAAAATGTGTGTATTT TGGTCTTGTGGTACTTCTCTTCGACAAAAGTCTTCGCATTCATCGAAAAA AGCTCGCAGTAACTATAGTATTTTTTTATTTATTTTTATTTTTTGCAGAT CGAGGCTGAAGTTGCAAAGGCCGTCGAGACCAGCAAGGCCAAGGACGACA GGCGCGGTTCACAGGTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig76892:188..2504-

>mRNA_H-elongata_contig76892.15359.1 ID=mRNA_H-elongata_contig76892.15359.1|Name=mRNA_H-elongata_contig76892.15359.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1602bp|location=Sequence derived from alignment at H-elongata_contig76892:188..2504- (Himanthalia elongata Himel1 dioecious)
TGGTCCATATATATCCTGGGACCAACCGGTGTTCGACAAAAGGTGGCGTT
CCCATTCTGTCTGATCAACAGCCCGGAGACGTCACTTTCGGGGGTATCTC
CCGGGATAAACCATCTGAGGCCTGGCTGGGTGCTGGCGGAGTCGATGTAT
ACGATCATCCGCAACGAGGAGAAGTACCGAAGGCGTGCCAGCGCGAGTGG
TCCATATATATCCTGGGACCAACCGGTGTTCGACAAAAGGTGGCGTTCCC
ATTCTGTCTGATCAACAGCCCGGAGACGTCACTTTCGGGGGTATCTCCCG
GGATAAACCATCTGAGGCCTGGCTGGGTGCTGGCGGAGTCGATGTATACG
ATCATCCGCAACGAGGAGAAGTACCGAAGGCGTGCCAGCGCGAGACGCAA
CCGCGTGGACTGGCCCATCTTTCGGCCGTCCACGATAAAGCTAATGGCCG
ACGCGCGCGCTAGGCTGGTGGCGGCCGGCGCGGAGAAGGTTGATACCTAC
ATCGGAGATCGCGACGTTGCGGGCTTGGGCAAGAACTACATGACGGAGGC
CTCCAGGCTCGAGGGCATCGCGGCGTACACCTTGCACCTCCGCAGACGCA
ACCGCGTGGACTGGCCCATCTTTCGGCCGTCCACGATAAAGCTAATGGCC
GACGCGCGCGCTAGGCTGGTGGCGGCCGGCGCGGAGAAGGTTGATACCTA
CATCGGAGATCGCGACGTTGCGGGCTTGGGCAAGAACTACATGACGGAGG
CCTCCAGGCTCGAGGGCATCGCGGCGTACACCTTGCACCTCCGCAGGTAC
GCCCTCCGAGGCCTGCTCTTGCGTCTAGAAGCCTCGGAGCCCTCCGCGGA
CCTCGGCCTGTCCTCCCTGTCCGGCCCCTCCGGCTCCACGGGCGGTTCTC
GCGACGATAAATGTCAAGGAGGGGTCGGACGAATGCCTCCCCCCGAAAGC
AACGCCCTCGAGACGGCGCGCCTGCTGACTCTCGGGGAGTCGTGGCCGCC
GTGCCTTGGTGCAGCCGACGGTAGCGGCAACGGGGAAGGAGAAGAATGGG
ATTTGCAAAGGAGCTTTCTGGCGGCGGAGTACGGGGCCTGGGAGACGAGC
GCGAAGAGCCTCTTGGAGGAGCTTATCGCGGTACGCCCTCCGAGGCCTGC
TCTTGCGTCTAGAAGCCTCGGAGCCCTCCGCGGACCTCGGCCTGTCCTCC
CTGTCCGGCCCCTCCGGCTCCACGGGCGGTTCTCGCGACGATAAATGTCA
AGGAGGGGTCGGACGAATGCCTCCCCCCGAAAGCAACGCCCTCGAGACGG
CGCGCCTGCTGACTCTCGGGGAGTCGTGGCCGCCGTGCCTTGGTGCAGCC
GACGGTAGCGGCAACGGGGAAGGAGAAGAATGGGATTTGCAAAGGAGCTT
TCTGGCGGCGGAGTACGGGGCCTGGGAGACGAGCGCGAAGAGCCTCTTGG
AGGAGCTTATCGCGATCGAGGCTGAAGTTGCAAAGGCCGTCGAGACCAGC
AAGGCCAAGGACGACAGGCGCGGTTCACAGGTAATCGAGGCTGAAGTTGC
AAAGGCCGTCGAGACCAGCAAGGCCAAGGACGACAGGCGCGGTTCACAGG
TA
back to top