prot_H-elongata_contig76872.15357.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig76872.15357.1
Unique Nameprot_H-elongata_contig76872.15357.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length232
Homology
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BLAST of mRNA_H-elongata_contig76872.15357.1 vs. uniprot
Match: A0A6H5KMM5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM5_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 5.010e-35
Identity = 87/191 (45.55%), Postives = 114/191 (59.69%), Query Frame = 0 
Query:   42 RSIIMPSEAKPFVDSEIGSDGAPAPAIGTRSAASKAAAKRHTGDRDGDKQVQGISKGNAFGLSDNNNINGGKTAAEEFPLSSVTATSCLPRSLATQRGWKMGAGESSRALVRAYHAAPEGSQKARRIAARLFCFTGFCLLPVTPDDARVLCSAAGDSLDWGLEEGEVPRLVSQTFRRQTREQKRELVIRIK 232
            RSI+MP EA+P +DS++G D A A                                  + G +   N     + A+E PLSS+   SCL R LA QRGW +G  ++ + L RA++ A  GSQ+ARR+AARLFC TG+ L  V P+DARVLC AAGDS++WGLE G+ PRLVSQ  RR+++EQKR LV+RIK
Sbjct:  326 RSIVMPCEAQPLMDSDLGEDHAEAETPNMPPXXXXXXXXXXXXXXXXXXXXXXXXXXPSQGSTSTTN-----SPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAAPGSQRARRVAARLFCLTGYALSAVAPEDARVLCEAAGDSMEWGLE-GDEPRLVSQPVRRESKEQKRGLVLRIK 510
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BLAST of mRNA_H-elongata_contig76872.15357.1 vs. uniprot
Match: D8LM31_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM31_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.620e-33
Identity = 70/117 (59.83%), Postives = 89/117 (76.07%), Query Frame = 0 
Query:  116 AEEFPLSSVTATSCLPRSLATQRGWKMGAGESSRALVRAYHAAPEGSQKARRIAARLFCFTGFCLLPVTPDDARVLCSAAGDSLDWGLEEGEVPRLVSQTFRRQTREQKRELVIRIK 232
            A+E PLSS+   SCL R LA QRGW +G  ++ + L RA++ A  GSQ+ARR+AARLFC TG+ L  V P+DARVLC  AGDS++WGLE G+ PRLVSQ  RR+++EQKR LV+RIK
Sbjct:  397 ADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAAPGSQRARRVAARLFCLTGYALSAVAPEDARVLCEVAGDSMEWGLE-GDEPRLVSQPVRRESKEQKRGLVLRIK 512
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76872.15357.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMM5_9PHAE5.010e-3545.55RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LM31_ECTSI2.620e-3359.83RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76872contigH-elongata_contig76872:1844..2539 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76872.15357.1mRNA_H-elongata_contig76872.15357.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig76872 1844..2539 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig76872.15357.1 ID=prot_H-elongata_contig76872.15357.1|Name=mRNA_H-elongata_contig76872.15357.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp
GATSAAKKNVITISKSREPGENVPPQPPSQSFTKKSRSSRRRSIIMPSEA
KPFVDSEIGSDGAPAPAIGTRSAASKAAAKRHTGDRDGDKQVQGISKGNA
FGLSDNNNINGGKTAAEEFPLSSVTATSCLPRSLATQRGWKMGAGESSRA
LVRAYHAAPEGSQKARRIAARLFCFTGFCLLPVTPDDARVLCSAAGDSLD
WGLEEGEVPRLVSQTFRRQTREQKRELVIRIK
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