prot_H-elongata_contig76867.15355.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig76867.15355.1
Unique Nameprot_H-elongata_contig76867.15355.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length217
Homology
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BLAST of mRNA_H-elongata_contig76867.15355.1 vs. uniprot
Match: D7FZY9_ECTSI (Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY9_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.460e-20
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 0 
Query:    1 MMGRWRVSAPKLVGLHRDASDLVLREKLECTWHHVRRNLNARADLLANIAMDSKGTVQVFDPT 63
            MMG+WRVSAPKLVGLHR AS++V + +L+CTWHHV R LN RADLLANIAMDSK   +++DP+
Sbjct:  124 MMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPS 186
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BLAST of mRNA_H-elongata_contig76867.15355.1 vs. uniprot
Match: A0A6H5L4R0_9PHAE (RNase H type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.920e-20
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 0 
Query:    1 MMGRWRVSAPKLVGLHRDASDLVLREKLECTWHHVRRNLNARADLLANIAMDSKGTVQVFDPT 63
            MMG+WRVSAPKLVGLHR AS++V + +L+CTWHHV R LN RADLLANIAMDSK   +++DP+
Sbjct:  147 MMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPS 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76867.15355.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZY9_ECTSI1.460e-2069.84Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5L4R0_9PHAE1.920e-2069.84RNase H type-1 domain-containing protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..61
e-value: 2.7E-8
score: 35.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76867contigH-elongata_contig76867:1407..2461 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76867.15355.1mRNA_H-elongata_contig76867.15355.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig76867 1407..2467 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig76867.15355.1 ID=prot_H-elongata_contig76867.15355.1|Name=mRNA_H-elongata_contig76867.15355.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
MMGRWRVSAPKLVGLHRDASDLVLREKLECTWHHVRRNLNARADLLANIA
MDSKGTVQVFDPTVPPDLEDESAPIPTTASPPSNSSCEARAVALSPAKSA
SRRRPSAPRSCPLLSSPGASAASAFAVGEREAAAIAAAKAAYEAVAADAR
AEIAGSVEILGGGLDAPRPPGDAVGSRAKGASTKESKCGSDGGAEEQDTR
RFVIHVASWRKVADDFG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf