mRNA_H-elongata_contig76793.15348.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76793.15348.1
Unique NamemRNA_H-elongata_contig76793.15348.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76793.15348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76793contigH-elongata_contig76793:762..1221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size448
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76793.15348.1prot_H-elongata_contig76793.15348.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76793 917..1210 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.9765947-UTR-H-elongata_contig76793:761..9161622931171.9765947-UTR-H-elongata_contig76793:761..916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76793 762..916 -
1691679727.849069-UTR-H-elongata_contig76793:761..9161691679727.849069-UTR-H-elongata_contig76793:761..916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76793 762..916 -
1622931172.0466847-UTR-H-elongata_contig76793:1210..12211622931172.0466847-UTR-H-elongata_contig76793:1210..1221Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76793 1211..1221 -
1691679727.8800392-UTR-H-elongata_contig76793:1210..12211691679727.8800392-UTR-H-elongata_contig76793:1210..1221Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76793 1211..1221 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.0000072-CDS-H-elongata_contig76793:916..10371622931172.0000072-CDS-H-elongata_contig76793:916..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76793 917..1037 -
1691679727.8607652-CDS-H-elongata_contig76793:916..10371691679727.8607652-CDS-H-elongata_contig76793:916..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76793 917..1037 -
1622931172.0202782-CDS-H-elongata_contig76793:1049..12101622931172.0202782-CDS-H-elongata_contig76793:1049..1210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76793 1050..1210 -
1691679727.8701963-CDS-H-elongata_contig76793:1049..12101691679727.8701963-CDS-H-elongata_contig76793:1049..1210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76793 1050..1210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76793.15348.1

>prot_H-elongata_contig76793.15348.1 ID=prot_H-elongata_contig76793.15348.1|Name=mRNA_H-elongata_contig76793.15348.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MIEKSIHSFIKRVKYLDIIREILPIGGSGAAGGGNGEPPQHPRIQKYAFI
RLTILQIGLNGISWRKKAHEKQIILEKTRDPLSHGKLGMILSF*
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mRNA from alignment at H-elongata_contig76793:762..1221-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76793.15348.1 ID=mRNA_H-elongata_contig76793.15348.1|Name=mRNA_H-elongata_contig76793.15348.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=460bp|location=Sequence derived from alignment at H-elongata_contig76793:762..1221- (Himanthalia elongata Himel1 dioecious)
TCGATAAATACATGATTGAGAAGTCTATCCATTCATTCATCAAAAGAGTC
AAATATTTAGACATTATTAGAGAGATATTGCCAATAGGTGGCTCGGGGGC
AGCGGGAGGAGGGAACGGCGAACCACCGCAACACCCACGCATCCAAAAAT
ATGCATTCATAAGGTTAACAATGTGACGAGAGAGACTCCAAATTGGATTG
AACGGGATTTCTTGGCGCAAAAAGGCGCACGAGAAACAAATCATTTTAGA
AAAGACACGAGATCCCCTGTCTCACGGGAAACTCGGGATGATCCTCAGCT
TTTGAATAGGTCGTACGTAAGGCCAGATGGGGTCTAGATTTTAAGGGGAA
AATACTAAAAACTACCTGGACCCAACACTCTCTAGGCCGCCCTAGATAAT
TGTTGACGAGCGTACATCAAGCCTAGCTCCTTCCTCGAGTTCTACGGCTT
GTTGACAGAT
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Coding sequence (CDS) from alignment at H-elongata_contig76793:762..1221-

>mRNA_H-elongata_contig76793.15348.1 ID=mRNA_H-elongata_contig76793.15348.1|Name=mRNA_H-elongata_contig76793.15348.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig76793:762..1221- (Himanthalia elongata Himel1 dioecious)
ATGATTGAGAAGTCTATCCATTCATTCATCAAAAGAGTCAAATATTTAGA
CATTATTAGAGAGATATTGCCAATAGGTGGCTCGGGGGCAGCGGGAGGAG
GGAACGGCGAACCACCGCAACACCCACGCATCCAAAAATATGCATTCATA
AGGTTAACAATATGATTGAGAAGTCTATCCATTCATTCATCAAAAGAGTC
AAATATTTAGACATTATTAGAGAGATATTGCCAATAGGTGGCTCGGGGGC
AGCGGGAGGAGGGAACGGCGAACCACCGCAACACCCACGCATCCAAAAAT
ATGCATTCATAAGGTTAACAATACTCCAAATTGGATTGAACGGGATTTCT
TGGCGCAAAAAGGCGCACGAGAAACAAATCATTTTAGAAAAGACACGAGA
TCCCCTGTCTCACGGGAAACTCGGGATGATCCTCAGCTTTTGAACTCCAA
ATTGGATTGAACGGGATTTCTTGGCGCAAAAAGGCGCACGAGAAACAAAT
CATTTTAGAAAAGACACGAGATCCCCTGTCTCACGGGAAACTCGGGATGA
TCCTCAGCTTTTGA
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