mRNA_H-elongata_contig7677.15347.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7677.15347.1 vs. uniprot
Match: D8LU73_ECTSI (Flagellar outer dynein arm light chain 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU73_ECTSI) HSP 1 Score: 239 bits (611), Expect = 1.020e-79 Identity = 117/132 (88.64%), Postives = 125/132 (94.70%), Query Frame = 1
Query: 1 MADEPKKGPPVVEIVLPTYITKPSEDEKFYPSEVKAIAEKAVHGELQDKDYDLEEAKEWSLNIADMIREGVKALKVPRYKIVVQVTIGQMKGQGVRVASRCLWDTATDNYASVKFRNQSLWCSAMIFGVYTE 396
MA+EP++GPPVVEIVLPTYITKPSEDEKFYPSEVKA+AEKAV ELQDK+YD EEAKEWSLNIAD IREGVK L VPRYKIVVQVTIGQMK QGVRVASRCLWDTATDNYASV+F+NQSLWCSAM+FGVYTE
Sbjct: 1 MAEEPRRGPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKTLNVPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 132
BLAST of mRNA_H-elongata_contig7677.15347.1 vs. uniprot
Match: A0A835ZA97_9STRA (Flagellar outer dynein arm light chain 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA97_9STRA) HSP 1 Score: 191 bits (484), Expect = 2.320e-60 Identity = 88/132 (66.67%), Postives = 108/132 (81.82%), Query Frame = 1
Query: 1 MADEPKKGPPVVEIVLPTYITKPSEDEKFYPSEVKAIAEKAVHGELQDKDYDLEEAKEWSLNIADMIREGVKALKVPRYKIVVQVTIGQMKGQGVRVASRCLWDTATDNYASVKFRNQSLWCSAMIFGVYTE 396
M + KG V+++VLPTY+ KP+EDE FYP++ KA++EK V EL K+YD +EAKEWSLNIAD IRE +K L +PRYK+VVQVT+GQMK QGVRVASRCLWDTATDNYASV ++ QSLWC+ M FG+YTE
Sbjct: 1 MEESQPKGRQVIDVVLPTYVMKPAEDEVFYPAKAKAMSEKIVKAELGGKEYDEQEAKEWSLNIADAIREQIKQLSIPRYKVVVQVTVGQMKDQGVRVASRCLWDTATDNYASVNYKTQSLWCNVMCFGIYTE 132
BLAST of mRNA_H-elongata_contig7677.15347.1 vs. uniprot
Match: A0A7S2V6C1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6C1_9STRA) HSP 1 Score: 181 bits (458), Expect = 2.180e-56 Identity = 85/133 (63.91%), Postives = 106/133 (79.70%), Query Frame = 1
Query: 1 MADEPKKGPPVVEIVLPTYITKPSEDEKFYPSEVKAIAEKAVHGELQDKDYDLEEAKEWSLNIADMIREGVKA-LKVPRYKIVVQVTIGQMKGQGVRVASRCLWDTATDNYASVKFRNQSLWCSAMIFGVYTE 396
M +EP G P+VE+VLPTYI P+EDEKFY S+VKAIAE+ + EL+ K+Y+ EAK WS+ I D +RE VK +PRYK+VVQV++GQMK QGVRVASRCLWDT TDNYASV ++N +LWCS M+FG+YTE
Sbjct: 1 MNEEPMPGQPIVEVVLPTYIMNPAEDEKFYQSQVKAIAERILKEELEGKEYEENEAKLWSITICDRVREHVKEECNIPRYKVVVQVSLGQMKDQGVRVASRCLWDTNTDNYASVSYKNHTLWCSCMVFGIYTE 133
BLAST of mRNA_H-elongata_contig7677.15347.1 vs. uniprot
Match: A0A7S2FB08_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FB08_9STRA) HSP 1 Score: 165 bits (418), Expect = 4.170e-50 Identity = 84/130 (64.62%), Postives = 99/130 (76.15%), Query Frame = 1
Query: 13 PKKGPPVVEIVLPTYITKPSEDEKFYPSEVKAIAEKAVHGELQDKDYD-LEEAKEWSLNIADMIREGVKA-LKVPRYKIVVQVTIGQMKGQGVRVASRCLWDTATDNYASVKFRNQSLWCSAMIFGVYTE 396
P+ G ++E+VLPTYI KP E E FYPS VK IA + EL K YD EEAK+W+ I + I+ VKA +PRYKI+VQVT+GQMK QGVRVASRCLWDTATDNYASV++ NQ LWCSAM+FGVYTE
Sbjct: 18 PRPGQSIIEVVLPTYIMKPEETEIFYPSHVKRIAGAILEEELAGKMYDDEEEAKKWNTTICEKIKAQVKAECDIPRYKIIVQVTLGQMKDQGVRVASRCLWDTATDNYASVEYANQHLWCSAMVFGVYTE 147
BLAST of mRNA_H-elongata_contig7677.15347.1 vs. uniprot
Match: A0A6U3X956_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3X956_9STRA) HSP 1 Score: 164 bits (414), Expect = 1.920e-49 Identity = 79/129 (61.24%), Postives = 101/129 (78.29%), Query Frame = 1
Query: 13 PKKGPPVVEIVLPTYITKPSEDEKFYPSEVKAIAEKAVHGELQDKDYDLEEAKEWSLNIADMIREGVKA-LKVPRYKIVVQVTIGQMKGQGVRVASRCLWDTATDNYASVKFRNQSLWCSAMIFGVYTE 396
P+ G PVV++VLPTYI KP+E+E FYPSE+K IAE V EL K YD +++KE ++ I I+E +K +PRYKIV+QVTIG+MK QGVRVASRCLWD TDNYASV++ NQ LWC+AM+FG++TE
Sbjct: 23 PRAGQPVVDVVLPTYIMKPAENEIFYPSEIKKIAEAVVKSELDGKLYDEDDSKESNVLICGKIKERIKEKCNLPRYKIVIQVTIGEMKNQGVRVASRCLWDNITDNYASVQYTNQHLWCTAMVFGIFTE 151
BLAST of mRNA_H-elongata_contig7677.15347.1 vs. uniprot
Match: A0A7S3JVI1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVI1_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.040e-48 Identity = 74/128 (57.81%), Postives = 95/128 (74.22%), Query Frame = 1
Query: 13 PKKGPPVVEIVLPTYITKPSEDEKFYPSEVKAIAEKAVHGELQDKDYDLEEAKEWSLNIADMIREGVKALKVPRYKIVVQVTIGQMKGQGVRVASRCLWDTATDNYASVKFRNQSLWCSAMIFGVYTE 396
P+ G V+E++LPTY KP EDEKFYPS+ KAI E + L ++YD E AKEW NI + I++ VK L +PRYK++ Q+TIGQ++ QGV +ASRCLWD A DNYASV F N SLW +AM+FGVYT+
Sbjct: 11 PRPGQRVIEVILPTYAMKPGEDEKFYPSKAKAICEDILRTTLAGQEYDEELAKEWVTNIGNDIKDKVKTLNIPRYKVICQITIGQVRDQGVSIASRCLWDVAHDNYASVNFSNDSLWANAMVFGVYTD 138
BLAST of mRNA_H-elongata_contig7677.15347.1 vs. uniprot
Match: F0YJJ5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJJ5_AURAN) HSP 1 Score: 160 bits (405), Expect = 2.550e-48 Identity = 74/130 (56.92%), Postives = 97/130 (74.62%), Query Frame = 1
Query: 7 DEPKKGPPVVEIVLPTYITKPSEDEKFYPSEVKAIAEKAVHGELQDKDYDLEEAKEWSLNIADMIREGVKALKVPRYKIVVQVTIGQMKGQGVRVASRCLWDTATDNYASVKFRNQSLWCSAMIFGVYTE 396
D P+ G V+E+VLPTY P+E EKFYPSE K I E+ + G+L++ YD E AKEW L I + I+ +K+L +PRYK+VVQVTIGQMK QGV VASRCLWD + DNYASV + N++LW + M+F +YT+
Sbjct: 4 DGPRPGQQVIEVVLPTYSMNPTEVEKFYPSEAKQICERVLTGQLENATYDDESAKEWILLIGNTIKSEIKSLNIPRYKVVVQVTIGQMKDQGVSVASRCLWDISNDNYASVNYTNETLWANVMVFVIYTD 133
BLAST of mRNA_H-elongata_contig7677.15347.1 vs. uniprot
Match: F0YN77_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN77_AURAN) HSP 1 Score: 159 bits (401), Expect = 1.070e-47 Identity = 74/128 (57.81%), Postives = 94/128 (73.44%), Query Frame = 1
Query: 13 PKKGPPVVEIVLPTYITKPSEDEKFYPSEVKAIAEKAVHGELQDKDYDLEEAKEWSLNIADMIREGVKALKVPRYKIVVQVTIGQMKGQGVRVASRCLWDTATDNYASVKFRNQSLWCSAMIFGVYTE 396
P+ G V+E+VLPTY P+E E+FYPSE K I E+ + GEL +K+Y + AK+W ++I + I+ +K L VPRYKI+VQVTIGQMK QGV VASRCLWD DNY SV F N SLW + M+FGVYT+
Sbjct: 7 PRPGQQVIEVVLPTYSMIPAEQERFYPSEAKRICERVLVGELDNKEYFEDSAKDWIISIGNTIKSEIKCLTVPRYKIIVQVTIGQMKDQGVSVASRCLWDITFDNYTSVNFTNSSLWANVMVFGVYTD 134
BLAST of mRNA_H-elongata_contig7677.15347.1 vs. uniprot
Match: A0A6S8SDH5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8SDH5_9STRA) HSP 1 Score: 157 bits (396), Expect = 5.780e-47 Identity = 73/132 (55.30%), Postives = 97/132 (73.48%), Query Frame = 1
Query: 1 MADEPKKGPPVVEIVLPTYITKPSEDEKFYPSEVKAIAEKAVHGELQDKDYDLEEAKEWSLNIADMIREGVKALKVPRYKIVVQVTIGQMKGQGVRVASRCLWDTATDNYASVKFRNQSLWCSAMIFGVYTE 396
M D + G V+EI+LPTY KP+EDEKFYPS+++ I +A+ EL +K+Y + AK+W L I + I+ K+L +PRYK++VQVTIGQMK QGV VASRCLWD DNY SV + N SLW +AM+FG+YT+
Sbjct: 1 MQDGARPGQQVIEIILPTYSMKPAEDEKFYPSKIRQICTEALKDELDNKEYFEDGAKDWILTIGNKIKAQAKSLNLPRYKVIVQVTIGQMKDQGVSVASRCLWDLLFDNYTSVNYTNSSLWANAMVFGLYTD 132
BLAST of mRNA_H-elongata_contig7677.15347.1 vs. uniprot
Match: A0A5A8DQM1_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DQM1_CAFRO) HSP 1 Score: 148 bits (373), Expect = 2.480e-43 Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = 1
Query: 4 ADEPKKGPPVVEIVLPTYITKPSEDEKFYPSEVKAIAEKAVHGELQDKDYDLEEAKEWSLNIADMIREGVKALKVPRYKIVVQVTIGQMKGQGVRVASRCLWDTATDNYASVKFRNQSLWCSAMIFGVYTE 396
A E GP V+ PTY KP+ED+KF PS VKAI ++ V G L+++++ +E W+ +AD IR VKAL +PRYK VVQV++G+++GQGVRVASRCLWDT TDN+AS FR+ S+WCS M+FG+Y E
Sbjct: 12 ATEGALGPDVIYKYEPTYRLKPAEDDKFRPSVVKAICKEVVDGFLKEREWKGDEETVWTRTLADEIRTRVKALGLPRYKFVVQVSLGEVRGQGVRVASRCLWDTDTDNHASYSFRSDSVWCSVMVFGLYAE 142 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7677.15347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7677.15347.1 >prot_H-elongata_contig7677.15347.1 ID=prot_H-elongata_contig7677.15347.1|Name=mRNA_H-elongata_contig7677.15347.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp MADEPKKGPPVVEIVLPTYITKPSEDEKFYPSEVKAIAEKAVHGELQDKDback to top mRNA from alignment at H-elongata_contig7677:868..2149- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7677.15347.1 ID=mRNA_H-elongata_contig7677.15347.1|Name=mRNA_H-elongata_contig7677.15347.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1282bp|location=Sequence derived from alignment at H-elongata_contig7677:868..2149- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7677:868..2149- >mRNA_H-elongata_contig7677.15347.1 ID=mRNA_H-elongata_contig7677.15347.1|Name=mRNA_H-elongata_contig7677.15347.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig7677:868..2149- (Himanthalia elongata Himel1 dioecious)back to top |