mRNA_H-elongata_contig76369.15311.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76369.15311.1
Unique NamemRNA_H-elongata_contig76369.15311.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: D8LDI4_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDI4_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.060e-21
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:   16 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 159
            VELNKSYDFNKITEAGAKL+PL GPG+TGIKNLGNSCYMNSCLQVL T
Sbjct:  355 VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQVLCT 402
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BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A836CMU5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMU5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.120e-19
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   16 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVL 153
            VELNKSYDF+KITEAG KL PL GPGYTG+KNLGNSCYMNSCLQ+L
Sbjct:  323 VELNKSYDFSKITEAGKKLTPLQGPGYTGLKNLGNSCYMNSCLQLL 368
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BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A7S2V2B3_9STRA (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2B3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.110e-18
Identity = 37/46 (80.43%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:   16 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVL 153
            VELNK+YDF+KITEAGA+L+PL+G G+TGIKNLGNSCY+NS LQVL
Sbjct:  199 VELNKTYDFSKITEAGAQLEPLYGAGFTGIKNLGNSCYINSVLQVL 244
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BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A7S0N978_9CHLO (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N978_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 1.050e-16
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   16 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 159
            VELNKS++F+KITEAGA L PL GPGY G+KNLGNSCYMNS +QVL T
Sbjct:  295 VELNKSFEFDKITEAGADLAPLSGPGYVGLKNLGNSCYMNSVMQVLYT 342
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BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: I0YIM7_COCSC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YIM7_COCSC)

HSP 1 Score: 75.9 bits (185), Expect = 1.160e-14
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   16 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 159
            ++LN S++F+KITE+G  L+PL GPGY G+KNLGNSCYMNS LQVL T
Sbjct:  303 IDLNMSFEFDKITESGTALEPLSGPGYVGLKNLGNSCYMNSVLQVLWT 350
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BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A8J9RIB1_9CHLO (Ubiquitin carboxyl-terminal hydrolase 5 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RIB1_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 2.170e-14
Identity = 32/48 (66.67%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   16 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 159
            ++LN S++F+K+TE+GA L+PL GPG+ G+KNLGNSCYMNS LQVL T
Sbjct:  303 IDLNMSFEFDKMTESGAALEPLTGPGFVGLKNLGNSCYMNSVLQVLWT 350
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BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A397G6L8_9GLOM (Ubiquitinyl hydrolase 1 n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G6L8_9GLOM)

HSP 1 Score: 72.8 bits (177), Expect = 1.410e-13
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   16 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVTFDCY 171
            +E N  YDF+ +TE G +L+PL+GPGYTGIKNLGNSCYM S LQ + + D +
Sbjct:  280 IEENLKYDFSMVTEDGKELEPLFGPGYTGIKNLGNSCYMGSVLQSVFSLDSF 331
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BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A2K3E0J5_CHLRE (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E0J5_CHLRE)

HSP 1 Score: 72.8 bits (177), Expect = 1.410e-13
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 MKPRKVELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 159
            M   + +LN  Y+F++ITEAGA L PL GPG+TG+ NLGNSCYMNS LQ+L+T
Sbjct:  292 MSELQADLNTGYEFSRITEAGAALVPLAGPGHTGLINLGNSCYMNSVLQLLLT 344
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BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A250XHT0_9CHLO (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XHT0_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 1.930e-13
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   16 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 159
            + LN SY+F +ITE+G  L+PL+GPG+ G+ NLGNSCYMNS LQ+L+T
Sbjct:  297 IGLNLSYEFGRITESGTALRPLYGPGHVGLINLGNSCYMNSVLQILLT 344
[Close]
BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A2G8JS06_STIJA (Ubiquitinyl hydrolase 1 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JS06_STIJA)

HSP 1 Score: 72.0 bits (175), Expect = 2.370e-13
Identity = 32/49 (65.31%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   16 VELN-KSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 159
            ++LN + ++++ + EAG+KLKPL+GPGYTG+KNLGNSCYMNS LQVL T
Sbjct:  289 IDLNTRVWEWDAMQEAGSKLKPLYGPGYTGLKNLGNSCYMNSVLQVLFT 337
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDI4_ECTSI1.060e-2191.67Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A836CMU5_9STRA2.120e-1986.96Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A7S2V2B3_9STRA9.110e-1880.43Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Fibroca... [more]
A0A7S0N978_9CHLO1.050e-1677.08Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Pyramim... [more]
I0YIM7_COCSC1.160e-1468.75Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Cocc... [more]
A0A8J9RIB1_9CHLO2.170e-1466.67Ubiquitin carboxyl-terminal hydrolase 5 n=1 Tax=Co... [more]
A0A397G6L8_9GLOM1.410e-1359.62Ubiquitinyl hydrolase 1 n=1 Tax=Diversispora epiga... [more]
A0A2K3E0J5_CHLRE1.410e-1362.26Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Chla... [more]
A0A250XHT0_9CHLO1.930e-1362.50Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chla... [more]
A0A2G8JS06_STIJA2.370e-1365.31Ubiquitinyl hydrolase 1 n=1 Tax=Stichopus japonicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76369contigH-elongata_contig76369:236..409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue8.6e-18
Seed eggNOG ortholog2880.D8LDI4
KEGG koko:K11836
GOsGO:0000323,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032182,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0036211,GO:0036459,GO:0042176,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0061136,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0080090,GO:0101005,GO:0140096,GO:1901564,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:2000058,GO:2000060
EggNOG free text desc.Pfam Zn-finger in ubiquitin-hydrolases and other protein
EggNOG OGsCOG5207@1,KOG0944@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.232969-CDS-H-elongata_contig76369:235..4091622931168.232969-CDS-H-elongata_contig76369:235..409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76369 236..409 +
1691679726.2506087-CDS-H-elongata_contig76369:235..4091691679726.2506087-CDS-H-elongata_contig76369:235..409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76369 236..409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76369.15311.1prot_H-elongata_contig76369.15311.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76369 236..409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76369.15311.1

>prot_H-elongata_contig76369.15311.1 ID=prot_H-elongata_contig76369.15311.1|Name=mRNA_H-elongata_contig76369.15311.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MKPRKVELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQV
LVTFDCY*
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mRNA from alignment at H-elongata_contig76369:236..409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76369.15311.1 ID=mRNA_H-elongata_contig76369.15311.1|Name=mRNA_H-elongata_contig76369.15311.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig76369:236..409+ (Himanthalia elongata Himel1 dioecious)
ATGAAACCGAGAAAGGTGGAGCTTAATAAATCCTACGACTTCAACAAGAT
TACAGAGGCGGGAGCCAAGCTCAAGCCTCTGTGGGGGCCAGGCTACACTG
GAATCAAGAACCTTGGCAACTCGTGCTACATGAACAGCTGCTTGCAGGTA
TTGGTTACTTTTGACTGCTATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig76369:236..409+

>mRNA_H-elongata_contig76369.15311.1 ID=mRNA_H-elongata_contig76369.15311.1|Name=mRNA_H-elongata_contig76369.15311.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig76369:236..409+ (Himanthalia elongata Himel1 dioecious)
ATGAAACCGAGAAAGGTGGAGCTTAATAAATCCTACGACTTCAACAAGAT
TACAGAGGCGGGAGCCAAGCTCAAGCCTCTGTGGGGGCCAGGCTACACTG
GAATCAAGAACCTTGGCAACTCGTGCTACATGAACAGCTGCTTGCAGGTA
TTGGTTACTTTTGACTGCTATTAAATGAAACCGAGAAAGGTGGAGCTTAA
TAAATCCTACGACTTCAACAAGATTACAGAGGCGGGAGCCAAGCTCAAGC
CTCTGTGGGGGCCAGGCTACACTGGAATCAAGAACCTTGGCAACTCGTGC
TACATGAACAGCTGCTTGCAGGTATTGGTTACTTTTGACTGCTATTAA
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