mRNA_H-elongata_contig75627.15245.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75627.15245.1
Unique NamemRNA_H-elongata_contig75627.15245.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75627.15245.1 vs. uniprot
Match: D8LJE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE2_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.120e-35
Identity = 152/412 (36.89%), Postives = 180/412 (43.69%), Query Frame = 1 
Query:   10 QELIAAADAEGIVRTYRPVSPLIRPRDRDRDETGPPLEAMAATSTAPRAFELVVECRLGAPTVSCYFALRRXXXXXXXXXAYMVGEEEKQSPRTRQGQRQPHPKTDEVLRVCSRDGKLRVWPVGSLPTHPIRVAPPPEQPQATSASPSFSRDGGGGPRPLTGGT------------------MLTSSLTVAAAAVNDLDNLDPAYRQDVSEDEEAREILENVVGVDGEAWRGGGGRV---IARGEAPLSGTRPATPRRVSFAAAEQVYRIEDPWGDADGPWPRGHPAEEFEFDG-------------ELEGPXXXXXXXXXXXXXXXXRP-RRLRQTWGQSPRASTSTSAGEGARSGRSTGSDGRIGEEESDRVFVTPSRLQEASLCSTAVEQAALERRMREVREGRRVHQP 1140
            QELIAA DA GIVRTYRP+ P     D +  +  PP  A AA +   R FELVVECRLGA  VSC F                VG E                   EVLR C+  G LR+WP  SLPT P+R  PPP    A +  P +       P P   GT                          A AA  + +N DP+         +A+     +VGV G    G GG      ARGE PL   RPA PRRVSFA A+QVY++EDP+  +                              EL  P XXXX            P RRLRQTWG      TS S+  G+R+ R + +D        D  FV PSR+QE SL STA EQA LERRM E  +G  V +P
Sbjct:  260 QELIAATDAAGIVRTYRPLLPRGGSTDNNPSDGAPPTAAAAAEA---RRFELVVECRLGARPVSCEFGSGPRGVESGGDRRRGVGGE------------------GEVLRTCTARGVLRLWPTASLPTRPMR--PPPSS--APTRLPDYHEALAPLPHPSNAGTDXXXXXXXXXXXXXXXXXXXXXXXXXAMAAGTEQENRDPSDPFSRWTAIDAKGRGPGLVGVGG----GEGGEEEEPSARGEPPLPKARPAAPRRVSFAPADQVYKLEDPYYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELGAPRXXXXAPTPMRASGATGPPRRLRQTWG------TSASSPRGSRARRGSSTDA-----SDDASFVAPSRMQEPSLWSTAAEQAELERRMTEEFDGSGVPEP 631
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BLAST of mRNA_H-elongata_contig75627.15245.1 vs. uniprot
Match: A0A6H5L2I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I0_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.350e-27
Identity = 158/387 (40.83%), Postives = 182/387 (47.03%), Query Frame = 1 
Query:   10 QELIAAADAEGIVRTYRPVSPLIRPRDRDRDETGPPLEAMAATSTAPRAFELVVECRLGAPTVSCYFALRRXXXXXXXXXAYMVGEEEKQSPRTRQGQRQPHPKTDEVLRVCSRDGKLRVWPVGSLPTHPIRVAPP--------PEQPQATSASPSFSR---DGGGGPRPLTGGTMLTSSLTVAAAAVNDLDNLDPAYRQDVSEDEEAREILENVVGVDGEAWRGGGGRVIARGEAPLSGTRPATPRRVSFAAAEQVYRIEDPW-GDADGPWPRGHPAEEFEFDGELEGPXXXXXXXXXXXXXXXXR--------PRRLRQTWGQSPRASTSTSAGEGARSGRSTGSDGRIGEEESDRVFVTPSRLQEASLCSTAVEQAALERRMRE 1110
            QELIAA DA GIVRTYRP+ P     D +  +  PP  A AA +   R FELVVECRLGA  V        XXXXXXXXX  + GE                    EVLR C+  G LR+W   SLPT P+R  PP        P+  +A +  P  S    D                          + +N DP+     S   +A      VVGV G   RG    + ARGE PL   RPA PRRVSFA A+QVY++EDP+ G  +                     XXXXXXXXXXXXXXXX         P RLRQTWG      TSTS+    R+ R    D       SD  FV PSR+QE SL STA EQ  LERRM E
Sbjct:  242 QELIAATDAAGIVRTYRPLLPRRVSTDNNPGDGAPPTTAAAAEA---RRFELVVECRLGARPVXXXXXXXXXXXXXXXXXXXVGGE-------------------GEVLRTCTARGILRLWLTASLPTRPMR--PPXXSAPTRLPDDHEALAPLPHTSNAGTDSSXXXXXXXXXXXXXXXXXXXXXVGAEQENRDPSDPFSRSTAIDATGSGSGVVGVGG-GERGEEVELTARGEPPLPKARPAAPRRVSFAPADQVYKLEDPYYGSGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRASGANGTPGRLRQTWG------TSTSSPRSNRARRGCSMDA------SDDAFVAPSRMQEPSLWSTAAEQVELERRMTE 591
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75627.15245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJE2_ECTSI2.120e-3536.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2I0_9PHAE2.350e-2740.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75627contigH-elongata_contig75627:28..1892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1140
Cds size1140
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75627.15245.1prot_H-elongata_contig75627.15245.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75627 28..1892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.6055987-CDS-H-elongata_contig75627:27..2091622931161.6055987-CDS-H-elongata_contig75627:27..209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75627 28..209 -
1691679723.5280166-CDS-H-elongata_contig75627:27..2091691679723.5280166-CDS-H-elongata_contig75627:27..209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75627 28..209 -
1622931161.6257632-CDS-H-elongata_contig75627:251..4651622931161.6257632-CDS-H-elongata_contig75627:251..465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75627 252..465 -
1691679723.5360198-CDS-H-elongata_contig75627:251..4651691679723.5360198-CDS-H-elongata_contig75627:251..465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75627 252..465 -
1622931161.6458106-CDS-H-elongata_contig75627:1019..16391622931161.6458106-CDS-H-elongata_contig75627:1019..1639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75627 1020..1639 -
1691679723.5437634-CDS-H-elongata_contig75627:1019..16391691679723.5437634-CDS-H-elongata_contig75627:1019..1639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75627 1020..1639 -
1622931161.663343-CDS-H-elongata_contig75627:1768..18921622931161.663343-CDS-H-elongata_contig75627:1768..1892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75627 1769..1892 -
1691679723.5513918-CDS-H-elongata_contig75627:1768..18921691679723.5513918-CDS-H-elongata_contig75627:1768..1892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75627 1769..1892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75627.15245.1

>prot_H-elongata_contig75627.15245.1 ID=prot_H-elongata_contig75627.15245.1|Name=mRNA_H-elongata_contig75627.15245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=380bp
MYFQELIAAADAEGIVRTYRPVSPLIRPRDRDRDETGPPLEAMAATSTAP
RAFELVVECRLGAPTVSCYFALRRKKEEEEKEEAYMVGEEEKQSPRTRQG
QRQPHPKTDEVLRVCSRDGKLRVWPVGSLPTHPIRVAPPPEQPQATSASP
SFSRDGGGGPRPLTGGTMLTSSLTVAAAAVNDLDNLDPAYRQDVSEDEEA
REILENVVGVDGEAWRGGGGRVIARGEAPLSGTRPATPRRVSFAAAEQVY
RIEDPWGDADGPWPRGHPAEEFEFDGELEGPRPPPPAPTPAPGSGSTRPR
RLRQTWGQSPRASTSTSAGEGARSGRSTGSDGRIGEEESDRVFVTPSRLQ
EASLCSTAVEQAALERRMREVREGRRVHQP
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mRNA from alignment at H-elongata_contig75627:28..1892-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75627.15245.1 ID=mRNA_H-elongata_contig75627.15245.1|Name=mRNA_H-elongata_contig75627.15245.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1865bp|location=Sequence derived from alignment at H-elongata_contig75627:28..1892- (Himanthalia elongata Himel1 dioecious)
ATGTATTTTCAGGAGTTGATCGCCGCGGCCGATGCGGAGGGGATCGTGAG
GACCTACCGTCCGGTTTCGCCGCTGATTAGACCAAGAGACAGAGACAGGG
ACGAAACCGGACCCCCGCTGGAAGGTGTCCATTGCGCGGCGGTGGCAGGA
AATAGTACTGGTATTAATGCTGCTATAACTAGAGCTACTATCAGCGCCGA
CCACGCCATCGGAATGGTCGGCGGCACGACGGGAGGGTCGACTGCGATCA
CAGCGATGGCTGCTACGTCCACCGCTCCTCGAGCGTTTGAGCTCGTCGTG
GAGTGCCGACTCGGCGCCCCGACCGTCTCGTGCTATTTCGCTCTCCGTAG
GAAGAAGGAGGAGGAGGAGAAGGAGGAGGCGTATATGGTTGGGGAAGAGG
AGAAGCAATCCCCGCGAACGCGACAAGGGCAGCGACAGCCACATCCGAAG
ACCGATGAGGTTCTCCGGGTGTGCTCGAGGGATGGCAAGCTTCGAGTCTG
GCCGGTTGGCTCGCTTCCGACTCACCCGATCCGGGTGGCCCCGCCACCCG
AACAACCCCAGGCCACCTCTGCATCGCCTTCCTTTTCGCGCGATGGGGGC
GGCGGACCCCGCCCGCTGACGGGTGGAACGATGTTGACATCATCATTAAC
AGTAGCAGCAGCAGCAGTGAATGATCTGGATAATCTGGATCCGGCTTACC
GGCAAGACGTTTCTGAAGATGAGGAGGCAAGAGAGATCCTGGAGAATGTG
GTTGGCGTGGACGGCGAGGCGTGGAGAGGAGGGGGCGGGAGGGTAATCGC
GCGGGGAGAGGCGCCGCTGTCGGGCACGCGGCCAGCCACCCCGCGACGCG
TCAGTTTTGCTGCAGCGGAACAGGTAGGGTCGCACAGTGTTGAGGCGTAC
GATGGGGCGGGTCTACGGCTGTGCTTACGAGGCTTGGACGGTGGGCGCGC
CCAGCTAGCTAGCTCTGAAGACTGTTTGATGTGCCTTTCAATCGTGGTGT
TAAACGATGAAAGCTGTGCAGCTCGCCTCTGCTGTTTTTAGTTTTTTGGT
TTGACGGGGTTTTGGTTGGGTTTGGTGGATCTTGGCTTGTCTTTTGTCTT
TTCTTTTTTTTTTCGATAAATTTCAATTTTAAGGGTTATGAAATTTTCCT
TGTGGCTTTTGTTGGAATAGAAAAATGAACGCATGCACGCACAGGAAAAT
TAAGAATATGTCTAACGTCGAACGTGTCTGTGTGTGACGGGAGGGAGAGT
GGAATTTTGTGACGATATGAAACCCCTGTTGTTCCATTGCATATATCAGT
GAAAAAAAAGCCTCCTTCCATCAACAAATATATACCTGGTACGCCCTTCC
GCCCATATAGTGGAGCATAAACTGTACCGTATGAGTTAGACGACAGGTAT
TGGACCATGCTGTACGCGCGACTGTAGGTGTACCGAATCGAAGACCCGTG
GGGGGATGCCGACGGTCCGTGGCCGCGAGGGCACCCGGCGGAGGAGTTCG
AGTTCGACGGCGAGCTCGAGGGCCCTCGTCCACCGCCCCCCGCGCCAACG
CCTGCCCCGGGATCCGGCTCTACCAGGCCGCGCCGTTTGAGGCAAACCTG
GGGGCAATCGCCGCGCGCTAGCACTAGCACCAGCGCCGGTGGTAACAGCG
GCGGCCACAGGCGCGGCTGGCGGCAGCAGGCAGAGGGCGCGAGGAGTGGG
AGGAGTACGGGTAGTGATGGTAGGATTGGTGAGGAGGAATCGGATAGGGT
GTTTGTGACGCCGTCGAGGCTTCAGGAGGCGTCGCTGTGCTCGACCGCCG
TGGAGCAGGCCGCGCTGGAGAGGCGCATGCGGGAGGTGAGAGAAGGGCGT
CGAGTCCATCAACCC
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Coding sequence (CDS) from alignment at H-elongata_contig75627:28..1892-

>mRNA_H-elongata_contig75627.15245.1 ID=mRNA_H-elongata_contig75627.15245.1|Name=mRNA_H-elongata_contig75627.15245.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2280bp|location=Sequence derived from alignment at H-elongata_contig75627:28..1892- (Himanthalia elongata Himel1 dioecious)
ATGTATTTTCAGGAGTTGATCGCCGCGGCCGATGCGGAGGGGATCGTGAG
GACCTACCGTCCGGTTTCGCCGCTGATTAGACCAAGAGACAGAGACAGGG
ACGAAACCGGACCCCCGCTGGAAGATGTATTTTCAGGAGTTGATCGCCGC
GGCCGATGCGGAGGGGATCGTGAGGACCTACCGTCCGGTTTCGCCGCTGA
TTAGACCAAGAGACAGAGACAGGGACGAAACCGGACCCCCGCTGGAAGCG
ATGGCTGCTACGTCCACCGCTCCTCGAGCGTTTGAGCTCGTCGTGGAGTG
CCGACTCGGCGCCCCGACCGTCTCGTGCTATTTCGCTCTCCGTAGGAAGA
AGGAGGAGGAGGAGAAGGAGGAGGCGTATATGGTTGGGGAAGAGGAGAAG
CAATCCCCGCGAACGCGACAAGGGCAGCGACAGCCACATCCGAAGACCGA
TGAGGTTCTCCGGGTGTGCTCGAGGGATGGCAAGCTTCGAGTCTGGCCGG
TTGGCTCGCTTCCGACTCACCCGATCCGGGTGGCCCCGCCACCCGAACAA
CCCCAGGCCACCTCTGCATCGCCTTCCTTTTCGCGCGATGGGGGCGGCGG
ACCCCGCCCGCTGACGGGTGGAACGATGTTGACATCATCATTAACAGTAG
CAGCAGCAGCAGTGAATGATCTGGATAATCTGGATCCGGCTTACCGGCAA
GACGTTTCTGAAGATGAGGAGGCAAGAGAGATCCTGGAGAATGTGGTTGG
CGTGGACGGCGAGGCGTGGAGAGGAGGGGGCGGGAGGGTAATCGCGCGGG
GAGAGGCGCCGCTGTCGGGCACGCGGCCAGCCACCCCGCGACGCGTCAGT
TTTGCTGCAGCGGAACAGCGATGGCTGCTACGTCCACCGCTCCTCGAGCG
TTTGAGCTCGTCGTGGAGTGCCGACTCGGCGCCCCGACCGTCTCGTGCTA
TTTCGCTCTCCGTAGGAAGAAGGAGGAGGAGGAGAAGGAGGAGGCGTATA
TGGTTGGGGAAGAGGAGAAGCAATCCCCGCGAACGCGACAAGGGCAGCGA
CAGCCACATCCGAAGACCGATGAGGTTCTCCGGGTGTGCTCGAGGGATGG
CAAGCTTCGAGTCTGGCCGGTTGGCTCGCTTCCGACTCACCCGATCCGGG
TGGCCCCGCCACCCGAACAACCCCAGGCCACCTCTGCATCGCCTTCCTTT
TCGCGCGATGGGGGCGGCGGACCCCGCCCGCTGACGGGTGGAACGATGTT
GACATCATCATTAACAGTAGCAGCAGCAGCAGTGAATGATCTGGATAATC
TGGATCCGGCTTACCGGCAAGACGTTTCTGAAGATGAGGAGGCAAGAGAG
ATCCTGGAGAATGTGGTTGGCGTGGACGGCGAGGCGTGGAGAGGAGGGGG
CGGGAGGGTAATCGCGCGGGGAGAGGCGCCGCTGTCGGGCACGCGGCCAG
CCACCCCGCGACGCGTCAGTTTTGCTGCAGCGGAACAGGTGTACCGAATC
GAAGACCCGTGGGGGGATGCCGACGGTCCGTGGCCGCGAGGGCACCCGGC
GGAGGAGTTCGAGTTCGACGGCGAGCTCGAGGGCCCTCGTCCACCGCCCC
CCGCGCCAACGCCTGCCCCGGGATCCGGCTCTACCAGGCCGCGCCGTTTG
AGGCAAACCTGGGGGCAATCGCCGCGCGCTAGCACTAGCACCAGCGCCGG
TGGTGTACCGAATCGAAGACCCGTGGGGGGATGCCGACGGTCCGTGGCCG
CGAGGGCACCCGGCGGAGGAGTTCGAGTTCGACGGCGAGCTCGAGGGCCC
TCGTCCACCGCCCCCCGCGCCAACGCCTGCCCCGGGATCCGGCTCTACCA
GGCCGCGCCGTTTGAGGCAAACCTGGGGGCAATCGCCGCGCGCTAGCACT
AGCACCAGCGCCGGTGAGGGCGCGAGGAGTGGGAGGAGTACGGGTAGTGA
TGGTAGGATTGGTGAGGAGGAATCGGATAGGGTGTTTGTGACGCCGTCGA
GGCTTCAGGAGGCGTCGCTGTGCTCGACCGCCGTGGAGCAGGCCGCGCTG
GAGAGGCGCATGCGGGAGGTGAGAGAAGGGCGTCGAGTCCATCAACCCAG
GGCGCGAGGAGTGGGAGGAGTACGGGTAGTGATGGTAGGATTGGTGAGGA
GGAATCGGATAGGGTGTTTGTGACGCCGTCGAGGCTTCAGGAGGCGTCGC
TGTGCTCGACCGCCGTGGAGCAGGCCGCGCTGGAGAGGCGCATGCGGGAG
GTGAGAGAAGGGCGTCGAGTCCATCAACCC
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